CX676379

Overview
NameCX676379
Unique NameCX676379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC8_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC8 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.829e-13
Identity = 38/145 (26.21%), Postives = 79/145 (54.48%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVD-SAGNVNLDILKDSWSPALTITKVL-LAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            +RI+ ++ +L M    D       D++  +    +GP  TPY+ G++ L +  P +YP+K P + F+ +I+H N+D ++G++ LD++  +WSP   +  ++   +  +   P+  +P+    A L L DK  +++   E+  ++A
Sbjct:    6 RRIETDVMKLLMS---DHQVDLINDSMQEFHVKFLGPKDTPYENGVWRLHVELPDNYPYKSPSIGFVNKIFHPNIDIASGSICLDVINSTWSPLYDLINIVEWMIPGLLKEPNGSDPLNNEAATLQLRDKKLYEEKIKEYIDKYA 147          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC12_XENTR (NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropicalis GN=ube2m PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.829e-13
Identity = 44/133 (33.08%), Postives = 69/133 (51.88%), Query Frame = 2
Query:  122 RIQREMAELNMDPPQDCSAG-PKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQ 517
            RIQ+++ ELN+  P+ C       D+L N+   I    G  Y+GG F         YP  PPKV   T +YH N+D  GNV L+IL++ W P LTI  ++  ++ +F  P+  +P+    A +   ++   +Q
Sbjct:   33 RIQKDINELNL--PKTCEIEFSDHDDLLNFKLVICPDEGF-YKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQ 162          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: U2D2L_HUMAN (Putative ubiquitin-conjugating enzyme E2 D2-like protein OS=Homo sapiens GN=UBE2DNL PE=5 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.829e-13
Identity = 37/72 (51.39%), Postives = 45/72 (62.50%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYH 334
            K I +E  EL  DP   CSAGP  D++ +W ATI  P  + Y GG+FFL   FP+DY FKPPK+ F   IYH
Sbjct:    4 KLIHKEFLELARDPQPHCSAGPVWDDMLHWQATITRPNDSSYLGGVFFL--KFPSDYLFKPPKIKFTNGIYH 73          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC9_CAEEL (SUMO-conjugating enzyme UBC9 OS=Caenorhabditis elegans GN=ubc-9 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.120e-13
Identity = 32/120 (26.67%), Postives = 71/120 (59.17%), Query Frame = 2
Query:  194 NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDS--WSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            NL+NW   I G   T ++GG++ + + F  D+P  PPK  F   ++H NV  +G V L +L ++  W P+++I ++L+ ++ +  +P++ +P       +Y +++A++++   +  +++A
Sbjct:   37 NLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEKRVKKEAVKYA 156          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2H_MOUSE (Ubiquitin-conjugating enzyme E2 H OS=Mus musculus GN=Ube2h PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.075e-13
Identity = 36/119 (30.25%), Postives = 65/119 (54.62%), Query Frame = 2
Query:  197 LYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSA-GNVNLDILKDSWSPALTITKVLLA-VRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            L  +V    GP GTPY+GG++ + +  P  YPFK P + F+ +I+H N+D A G V LD++  +W+    +T +  + +  +   P+  +P+    A +YL    ++ Q   E+  ++A
Sbjct:   31 LNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYA 149          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2H_HUMAN (Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens GN=UBE2H PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.075e-13
Identity = 36/119 (30.25%), Postives = 65/119 (54.62%), Query Frame = 2
Query:  197 LYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSA-GNVNLDILKDSWSPALTITKVLLA-VRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            L  +V    GP GTPY+GG++ + +  P  YPFK P + F+ +I+H N+D A G V LD++  +W+    +T +  + +  +   P+  +P+    A +YL    ++ Q   E+  ++A
Sbjct:   31 LNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYA 149          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2H_BOVIN (Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN=UBE2H PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.075e-13
Identity = 36/119 (30.25%), Postives = 65/119 (54.62%), Query Frame = 2
Query:  197 LYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSA-GNVNLDILKDSWSPALTITKVLLA-VRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            L  +V    GP GTPY+GG++ + +  P  YPFK P + F+ +I+H N+D A G V LD++  +W+    +T +  + +  +   P+  +P+    A +YL    ++ Q   E+  ++A
Sbjct:   31 LNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYA 149          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC12_MOUSE (NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=Ube2m PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.075e-13
Identity = 43/132 (32.58%), Postives = 67/132 (50.76%), Query Frame = 2
Query:  122 RIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQ 517
            RIQ+++ ELN+    D S     D+L N+   I    G  Y+ G F         YP  PPKV   T +YH N+D  GNV L+IL++ W P LTI  ++  ++ +F  P+  +P+    A +   ++   +Q
Sbjct:   33 RIQKDINELNLPKTCDISFSDP-DDLLNFKLVICPDEGF-YKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQ 162          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC12_HUMAN (NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=UBE2M PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.075e-13
Identity = 43/132 (32.58%), Postives = 67/132 (50.76%), Query Frame = 2
Query:  122 RIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQ 517
            RIQ+++ ELN+    D S     D+L N+   I    G  Y+ G F         YP  PPKV   T +YH N+D  GNV L+IL++ W P LTI  ++  ++ +F  P+  +P+    A +   ++   +Q
Sbjct:   33 RIQKDINELNLPKTCDISFSDP-DDLLNFKLVICPDEGF-YKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQ 162          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC12_BOVIN (NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UBE2M PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.075e-13
Identity = 43/132 (32.58%), Postives = 67/132 (50.76%), Query Frame = 2
Query:  122 RIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQ 517
            RIQ+++ ELN+    D S     D+L N+   I    G  Y+ G F         YP  PPKV   T +YH N+D  GNV L+IL++ W P LTI  ++  ++ +F  P+  +P+    A +   ++   +Q
Sbjct:   33 RIQKDINELNLPKTCDISFSDP-DDLLNFKLVICPDEGF-YKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQ 162          
The following BLAST results are available for this feature:
BLAST of CX676379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
UBC8_YEAST1.829e-1326.21Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UBC12_XENTR1.829e-1333.08NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropical... [more]
U2D2L_HUMAN1.829e-1351.39Putative ubiquitin-conjugating enzyme E2 D2-like p... [more]
UBC9_CAEEL3.120e-1326.67SUMO-conjugating enzyme UBC9 OS=Caenorhabditis ele... [more]
UBE2H_MOUSE4.075e-1330.25Ubiquitin-conjugating enzyme E2 H OS=Mus musculus ... [more]
UBE2H_HUMAN4.075e-1330.25Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens ... [more]
UBE2H_BOVIN4.075e-1330.25Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN... [more]
UBC12_MOUSE4.075e-1332.58NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=... [more]
UBC12_HUMAN4.075e-1332.58NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=... [more]
UBC12_BOVIN4.075e-1332.58NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UB... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_69B08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69B08-C15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676379 ID=CX676379; Name=CX676379; organism=Citrus sinensis; type=EST; length=823bp
CTTGAAAGTTAAAATGGTGCGTGTTGTTGTGGACATGAACAGCGGCGGTG
GAGGTAGCGGAGTCGGAGGAACATCGACTTCATCGTGGGTCTCGACGACG
TCGGTTTCAGCATCTGGGAAGAGGATTCAGAGAGAAATGGCGGAGCTGAA
CATGGACCCACCTCAGGATTGCTCTGCTGGTCCCAAGGGTGACAATCTTT
ACAACTGGGTCGCCACCATCATTGGCCCTGCTGGAACACCATACCAAGGG
GGTATATTTTTTCTTGACATAACATTTCCAACTGATTATCCGTTCAAACC
TCCAAAGGTGGCATTTCTAACTCGAATCTACCACTGCAACGTTGATTCTG
CTGGCAATGTTAATTTGGATATCTTGAAGGACAGTTGGAGTCCAGCTCTG
ACAATTACGAAGGTGCTACTTGCAGTCAGATCAATGTTCACAAACCCTAG
CCTTCATAATCCCATTGTTCCTGGCATTGCCCACTTGTACTTAGAAGATA
AAGCTAAACATGATCAACTAGCAGCAGAGTGGACACTGCGATTTGCCAAG
TAATGAATCCAATGAAAGAGCTGACACCGCTTAACATTTCGATGTTGTTG
TAGATTCCTTATCAGCATGTCGTTATTAGTCCAAGACTGCACCCATGCCA
CTTTCTTGAATATGCCCCTAGGCATCTATAAAATGCTCTCCAACATGAAC
TGCAATGTTATCCTTGCAACTATATCACGTTTGAAAGCAACTGTGAGAAA
TTCAGCTTATTGTAAATGTCTTGCCTCATATGGTTACATCAATATTTAGT
TGCTGTGTCGAAATAAAATCATT
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