CX676379

Overview
NameCX676379
Unique NameCX676379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC8_SCHPO (Ubiquitin-conjugating enzyme E2 8 OS=Schizosaccharomyces pombe GN=ubc8 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.322e-13
Identity = 40/145 (27.59%), Postives = 76/145 (52.41%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDS-AGNVNLDILKDSWSPALTITKVL-LAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            +RI+ ++ +L M    D       DN+  +     GP+ TPY GGI+ + +  P++YP+K P + F+ RI+H N+D  +G+V LD++  +WSP   +  +  + +  +   P+  +P+    A L L +   +     ++  R+A
Sbjct:    6 RRIETDVMKLLMS---DYEVTLVNDNMQEFYVRFHGPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMFDMINIFEVFLPQLLRYPNASDPLNGEAAALLLREPNTYYAKVRDYIARYA 147          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC12_DICDI (NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium discoideum GN=ube2m PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.322e-13
Identity = 42/127 (33.07%), Postives = 64/127 (50.39%), Query Frame = 2
Query:  122 RIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDK 502
            R Q+++ E  M+ P  C+   K  N        I P    YQ   F   I  P+ YP+ PPKV   T +YH N+D  G+V L+IL+  W P L I  V+  + ++F  P+  +P+    A L +++K
Sbjct:   81 RAQKDIDE--MEVPTGCAVSFKDTNDILNFNLSITPTDGLYQSATFQFTINIPSTYPYDPPKVHCDTLVYHPNIDLEGHVCLNILRQDWMPVLNIGTVIFGLMTLFLEPNPDDPLNKDAAQLMIDNK 205          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: RCE1_ARATH (NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana GN=RCE1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.322e-13
Identity = 42/117 (35.90%), Postives = 64/117 (54.70%), Query Frame = 2
Query:  122 RIQREMAELNMDPPQDCSAG-PKG-DNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPI 466
            R+ ++++ELN+  P  CS   P G D+L N+  +I  P    Y  G F         YP + PKV   T++YH N+D  GNV L+IL++ W P L I  V+  +  +FT P+  +P+
Sbjct:   34 RLHKDISELNL--PSSCSISFPNGKDDLMNFEVSI-KPDDGYYHNGTFVFTFQVSPVYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNSEDPL 147          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC12_CANGA (NEDD8-conjugating enzyme UBC12 OS=Candida glabrata GN=UBC12 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.951e-13
Identity = 42/133 (31.58%), Postives = 71/133 (53.38%), Query Frame = 2
Query:  122 RIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQL 520
            R+Q+++ EL + P    +     ++    +  II P    Y+GG F    TF   YP  PPKV    +I+H N+D  G + L+IL++ WSPAL +  ++L + S+F  P+ ++P+    A +  +DK +   L
Sbjct:   36 RLQKDIEELELPPTVRVNIISLDNHKEMSLNIIIIPDEGFYKGGKFRFTATFLETYPIDPPKVICNNKIFHPNIDPHGKICLNILREDWSPALDLQCIVLGLLSLFQEPNGNDPLNKEAAEVLNKDKLEFGNL 168          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UB2L6_RAT (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus norvegicus GN=Ube2l6 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.951e-13
Identity = 45/144 (31.25%), Postives = 75/144 (52.08%), Query Frame = 2
Query:  119 KRIQREMAELNMD-PPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILK-DSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRF 544
            KR+ +E+ +L+ + PP          N+  W   ++ P   PY+   F L I FP +YP KPP + F T+IYH N+   G V L ++  ++W P     +VL A+  + + P+L  P+   +A L  +D     + A E+TL++
Sbjct:    5 KRVAKELDDLSKELPPYLRHLSSDDANVLVWHMLLL-PDQLPYRLKAFGLRIDFPREYPLKPPTLRFTTKIYHPNISEDGLVCLPLISTENWKPYTKAYQVLEALNILVSRPNLEEPVRLELADLLTQDPEMFRKKAEEFTLQY 147          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC4_WHEAT (Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum GN=UBC4 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.079e-13
Identity = 45/148 (30.41%), Postives = 76/148 (51.35%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDS-AGNVNLDILKDSWSP---ALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 550
            KR + ++ +L M    D       D ++ +     GP  + YQGG++ + +     YP+K P + F  +IYH NVD  +G+V LD++  +WSP    + I +V L    ++ NPS  +P+    A L + DK  ++    E+  R+AK
Sbjct:    6 KRREMDLMKLMMS---DYKVDMINDGMHEFFVHFHGPKDSIYQGGVWKVRVELTEAYPYKSPSIGFTNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNIFEVFLPQLLLYPNPS--DPLNGEAASLMMRDKNAYENKVKEYCERYAK 148          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UB12L_ARATH (Probable NEDD8-conjugating enzyme Ubc12-like OS=Arabidopsis thaliana GN=RCE2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.079e-13
Identity = 42/117 (35.90%), Postives = 63/117 (53.85%), Query Frame = 2
Query:  122 RIQREMAELNMDPPQDCSAG-PKGDN-LYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPI 466
            R+ ++++ELN+  P+ C    P G N L N+  TI    G  Y  G F         YP + PKV   T++YH N+D  GNV L+IL++ W P L I  V+  +  +FT P+  +P+
Sbjct:   35 RLHKDISELNL--PKSCKISFPNGKNDLMNFEVTIKPDEGY-YLSGNFVFSFQVSNMYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNYEDPL 148          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC12_ASHGO (NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii GN=UBC12 PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.186e-12
Identity = 40/126 (31.75%), Postives = 65/126 (51.59%), Query Frame = 2
Query:  122 RIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLED 499
            R+++++A L +  P   +   K     N V   I P    Y+GG F   + F   YP +PP V  L  IYH N+D +GN+ L++L++ WSP + +  V+L +  +F  P+  +P+    A   L D
Sbjct:   34 RVEKDLATLEL--PTTVTLDTKCLGSENKVYLRISPEEGVYRGGHFRFSVVFRDTYPIEPPTVKCLNTIYHPNIDYSGNICLNVLREDWSPVMDLQTVVLGLLFLFLEPNGSDPLNRQAADTMLRD 157          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC12_SCHPO (NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomyces pombe GN=ubc12 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.549e-12
Identity = 39/115 (33.91%), Postives = 62/115 (53.91%), Query Frame = 2
Query:  122 RIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPI 466
            RIQ+++ +L +  P   S         N +   I P    Y+GG F   I    +YP  PPKV  L +IYH N+D  GNV L+IL+  W+P L +  +L+ ++ +F +P+  +P+
Sbjct:   27 RIQKDVTDLEI--PSTMSTSWPDPIKLNVLHLEIRPDEGYYKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNLNSILVGLQFLFLSPNAEDPL 139          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2F_XENTR (NEDD8-conjugating enzyme UBE2F OS=Xenopus tropicalis GN=ube2f PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.022e-12
Identity = 43/147 (29.25%), Postives = 73/147 (49.66%), Query Frame = 2
Query:  131 REMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKD------SWSPALTITKVLLAVRSMFTN-PSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 550
            +E+AEL  + P  C       N  ++    + P  + YQGG F  +I  P  Y   PPKV  LTRI+H N+   G + L +L++       W+P  T+  V+  + S+FT+  +  +P+    A  +L DK ++     ++  R+A+
Sbjct:   39 KEVAELEANLPCTCKVNFPDPNKLHYFHLTVSPDESYYQGGRFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKDEYRNKVEDYIKRYAR 185          
The following BLAST results are available for this feature:
BLAST of CX676379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
UBC8_SCHPO5.322e-1327.59Ubiquitin-conjugating enzyme E2 8 OS=Schizosacchar... [more]
UBC12_DICDI5.322e-1333.07NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium di... [more]
RCE1_ARATH5.322e-1335.90NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thal... [more]
UBC12_CANGA6.951e-1331.58NEDD8-conjugating enzyme UBC12 OS=Candida glabrata... [more]
UB2L6_RAT6.951e-1331.25Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus... [more]
UBC4_WHEAT9.079e-1330.41Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum... [more]
UB12L_ARATH9.079e-1335.90Probable NEDD8-conjugating enzyme Ubc12-like OS=Ar... [more]
UBC12_ASHGO1.186e-1231.75NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii ... [more]
UBC12_SCHPO1.549e-1233.91NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomy... [more]
UBE2F_XENTR2.022e-1229.25NEDD8-conjugating enzyme UBE2F OS=Xenopus tropical... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_69B08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69B08-C15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676379 ID=CX676379; Name=CX676379; organism=Citrus sinensis; type=EST; length=823bp
CTTGAAAGTTAAAATGGTGCGTGTTGTTGTGGACATGAACAGCGGCGGTG
GAGGTAGCGGAGTCGGAGGAACATCGACTTCATCGTGGGTCTCGACGACG
TCGGTTTCAGCATCTGGGAAGAGGATTCAGAGAGAAATGGCGGAGCTGAA
CATGGACCCACCTCAGGATTGCTCTGCTGGTCCCAAGGGTGACAATCTTT
ACAACTGGGTCGCCACCATCATTGGCCCTGCTGGAACACCATACCAAGGG
GGTATATTTTTTCTTGACATAACATTTCCAACTGATTATCCGTTCAAACC
TCCAAAGGTGGCATTTCTAACTCGAATCTACCACTGCAACGTTGATTCTG
CTGGCAATGTTAATTTGGATATCTTGAAGGACAGTTGGAGTCCAGCTCTG
ACAATTACGAAGGTGCTACTTGCAGTCAGATCAATGTTCACAAACCCTAG
CCTTCATAATCCCATTGTTCCTGGCATTGCCCACTTGTACTTAGAAGATA
AAGCTAAACATGATCAACTAGCAGCAGAGTGGACACTGCGATTTGCCAAG
TAATGAATCCAATGAAAGAGCTGACACCGCTTAACATTTCGATGTTGTTG
TAGATTCCTTATCAGCATGTCGTTATTAGTCCAAGACTGCACCCATGCCA
CTTTCTTGAATATGCCCCTAGGCATCTATAAAATGCTCTCCAACATGAAC
TGCAATGTTATCCTTGCAACTATATCACGTTTGAAAGCAACTGTGAGAAA
TTCAGCTTATTGTAAATGTCTTGCCTCATATGGTTACATCAATATTTAGT
TGCTGTGTCGAAATAAAATCATT
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