CX676379

Overview
NameCX676379
Unique NameCX676379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2F_XENLA (NEDD8-conjugating enzyme UBE2F OS=Xenopus laevis GN=ube2f PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.022e-12
Identity = 43/147 (29.25%), Postives = 73/147 (49.66%), Query Frame = 2
Query:  131 REMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKD------SWSPALTITKVLLAVRSMFTN-PSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 550
            +E+AEL  + P  C       N  ++    + P  + YQGG F  +I  P  Y   PPKV  LTRI+H N+   G + L +L++       W+P  T+  V+  + S+FT+  +  +P+    A  +L DK ++     ++  R+A+
Sbjct:   39 KEVAELEANLPCTCKVNFPDPNKLHYFHLTVSPDESYYQGGRFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKDEYRNKVEDYIKRYAR 185          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC_ASFB7 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (strain Badajoz 1971 Vero-adapted) GN=UBC PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.022e-12
Identity = 40/135 (29.63%), Postives = 65/135 (48.15%), Query Frame = 2
Query:  134 EMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKD--------SWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHD 514
            E   L  +P ++       +N+  W   + GP  T Y+GG+F   + FP +YP+ PPK+ F + ++H N+   G + + IL          +WSPA  I  +LL+V S+   P+  +P     A  Y +   K D
Sbjct:    9 EYRHLIENPSENFKISVNENNITEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPKLTFTSEMWHPNIYPDGRLCISILHGDNAEEQGMTWSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYRKYVYKED 143          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC17_ARATH (Probable ubiquitin carrier protein E2 17 OS=Arabidopsis thaliana GN=UBC17 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.022e-12
Identity = 46/142 (32.39%), Postives = 72/142 (50.70%), Query Frame = 2
Query:  122 RIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRI-YHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRF 544
            R+Q+E  E   +PP         DNL  W+  + G  GT Y    + L + FP  YP + P+V F      H ++ S G++ LD+L DSWSPA+ ++ + L++ SM ++ S+     P     YL++  KH +   E   RF
Sbjct:   19 RLQKEFMEWQTNPPSGFKHRVS-DNLQRWIIEVHGVPGTLYANETYQLQVEFPEHYPMEAPQVIFQHPAPLHPHIYSNGHICLDVLYDSWSPAMRLSSICLSILSMLSSSSVKQK--PKDNDHYLKN-CKHGRSPKETRWRF 156          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UB2L6_MOUSE (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Mus musculus GN=Ube2l6 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 2.022e-12
Identity = 46/144 (31.94%), Postives = 74/144 (51.39%), Query Frame = 2
Query:  119 KRIQREMAELNMD-PPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDIL-KDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRF 544
            KR+ +E+  L+ + PP          N+  W   ++ P   PY    F + I FP +YPFKPP + F T+IYH NV   G V L ++  ++W P     +VL A+  + + P+L  P+   +A L  ++     + A E+TL+F
Sbjct:    5 KRVAKELESLSKELPPYLRQLSSDDANVLVWHMLLL-PDQLPYGLKAFQVRIDFPREYPFKPPTLRFTTKIYHPNVREDGLVCLPLISNENWKPYTKPYQVLEALNVLVSKPNLEEPVRLELADLLTQNPEMFRKKAEEFTLKF 147          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC6_DEBHA (Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces hansenii GN=UBC6 PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.450e-12
Identity = 35/110 (31.82%), Postives = 61/110 (55.45%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLT--RIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFT 442
            KR+ +E   + ++PP   SA P  +N+  W   I GP  TP++ G +   + FP++YPFKPP ++ +T    + CN     +++ D   D+W+PA ++  +L  + S  T
Sbjct:    8 KRLTKEYKAITLNPPPYVSAKPNDENILEWHYVITGPPHTPFEEGQYHGILRFPSEYPFKPPSISMITPNGRFACNTRLCLSMS-DYHPDTWNPAWSVATILTGLLSFMT 116          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC6_YEAST (Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces cerevisiae GN=UBC6 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.506e-12
Identity = 36/110 (32.73%), Postives = 61/110 (55.45%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNL-DILKDSWSPALTITKVLLAVRSMFTN 445
            KR+ +E   +  +PP    A P  DN+  W   I GPA TPY+GG +   +TFP+DYP+KPP +  +T       ++   +++ D   D+W+P  +++ +L  + S  T+
Sbjct:    8 KRLTKEYKLMVENPPPYILARPNEDNILEWHYIITGPADTPYKGGQYHGTLTFPSDYPYKPPAIRMITPNGRFKPNTRLCLSMSDYHPDTWNPGWSVSTILNGLLSFMTS 117          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2F_CHICK (NEDD8-conjugating enzyme UBE2F OS=Gallus gallus GN=UBE2F PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.885e-12
Identity = 47/152 (30.92%), Postives = 76/152 (50.00%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAG-PKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKD------SWSPALTITKVLLAVRSMFTN-PSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 550
            K + +E+AEL  + P  C    P  + L+ +  T+I   G  YQGG F  +I  P  Y   PPKV  LTRI+H N+   G + L +L++       W+P  T+  V+  + S+FT+  +  +P+    A  +L DK        ++  R+A+
Sbjct:   35 KLLVKEVAELEANLPCTCKVNFPDPNKLHYFQLTVIPDEGY-YQGGKFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVEDYIKRYAR 185          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC12_KLULA (NEDD8-conjugating enzyme UBC12 OS=Kluyveromyces lactis GN=UBC12 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.885e-12
Identity = 30/91 (32.97%), Postives = 53/91 (58.24%), Query Frame = 2
Query:  242 YQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHD 514
            Y GG ++ ++     YP +PP V  + RIYH N+D  GNV L++L++ W+PAL I  +++ +  +F  P+  +P+    A   +ED  + +
Sbjct:   72 YAGGTYYFNVFIKDTYPMEPPVVKCMHRIYHPNIDIDGNVCLNLLREDWTPALDIQSIIIGILFLFHEPNGRDPLNKDAAKTLIEDPLRFE 162          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2U_HUMAN (Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens GN=UBE2U PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.685e-12
Identity = 39/130 (30.00%), Postives = 71/130 (54.62%), Query Frame = 2
Query:  125 IQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVD-SAGNVNLDIL--KDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKA 505
            + R+  +L  +  +  +A P  +++  W   I G   + +QG +F L I F ++Y + PP V F+T  +H NVD   G   +D L   + W+   T++ +LLA++ M +NP L NP+    A + ++D++
Sbjct:    9 LHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDES 138          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2U_MACFA (Ubiquitin-conjugating enzyme E2 U OS=Macaca fascicularis GN=UBE2U PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.004e-11
Identity = 40/130 (30.77%), Postives = 71/130 (54.62%), Query Frame = 2
Query:  125 IQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVD-SAGNVNLDILKD--SWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKA 505
            +QR+  +L  +  +  +A P  +++  W   I G   + +QG +F L I F ++Y + PP V F+T  +H NVD   G   +D L +   W+   T++ +LLA++ M +NP L NP+    A +  +D++
Sbjct:    9 LQRDFYDLKENNYKGITARPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFVTIPFHPNVDPHTGQPCIDFLDNPKKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILTKDES 138          
The following BLAST results are available for this feature:
BLAST of CX676379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
UBE2F_XENLA2.022e-1229.25NEDD8-conjugating enzyme UBE2F OS=Xenopus laevis G... [more]
UBC_ASFB72.022e-1229.63Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC17_ARATH2.022e-1232.39Probable ubiquitin carrier protein E2 17 OS=Arabid... [more]
UB2L6_MOUSE2.022e-1231.94Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Mus mu... [more]
UBC6_DEBHA3.450e-1231.82Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces ... [more]
UBC6_YEAST4.506e-1232.73Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces... [more]
UBE2F_CHICK5.885e-1230.92NEDD8-conjugating enzyme UBE2F OS=Gallus gallus GN... [more]
UBC12_KLULA5.885e-1232.97NEDD8-conjugating enzyme UBC12 OS=Kluyveromyces la... [more]
UBE2U_HUMAN7.685e-1230.00Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens ... [more]
UBE2U_MACFA1.004e-1130.77Ubiquitin-conjugating enzyme E2 U OS=Macaca fascic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_69B08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69B08-C15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676379 ID=CX676379; Name=CX676379; organism=Citrus sinensis; type=EST; length=823bp
CTTGAAAGTTAAAATGGTGCGTGTTGTTGTGGACATGAACAGCGGCGGTG
GAGGTAGCGGAGTCGGAGGAACATCGACTTCATCGTGGGTCTCGACGACG
TCGGTTTCAGCATCTGGGAAGAGGATTCAGAGAGAAATGGCGGAGCTGAA
CATGGACCCACCTCAGGATTGCTCTGCTGGTCCCAAGGGTGACAATCTTT
ACAACTGGGTCGCCACCATCATTGGCCCTGCTGGAACACCATACCAAGGG
GGTATATTTTTTCTTGACATAACATTTCCAACTGATTATCCGTTCAAACC
TCCAAAGGTGGCATTTCTAACTCGAATCTACCACTGCAACGTTGATTCTG
CTGGCAATGTTAATTTGGATATCTTGAAGGACAGTTGGAGTCCAGCTCTG
ACAATTACGAAGGTGCTACTTGCAGTCAGATCAATGTTCACAAACCCTAG
CCTTCATAATCCCATTGTTCCTGGCATTGCCCACTTGTACTTAGAAGATA
AAGCTAAACATGATCAACTAGCAGCAGAGTGGACACTGCGATTTGCCAAG
TAATGAATCCAATGAAAGAGCTGACACCGCTTAACATTTCGATGTTGTTG
TAGATTCCTTATCAGCATGTCGTTATTAGTCCAAGACTGCACCCATGCCA
CTTTCTTGAATATGCCCCTAGGCATCTATAAAATGCTCTCCAACATGAAC
TGCAATGTTATCCTTGCAACTATATCACGTTTGAAAGCAACTGTGAGAAA
TTCAGCTTATTGTAAATGTCTTGCCTCATATGGTTACATCAATATTTAGT
TGCTGTGTCGAAATAAAATCATT
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