CX676379

Overview
NameCX676379
Unique NameCX676379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2W_MOUSE (Probable ubiquitin-conjugating enzyme E2 W OS=Mus musculus GN=Ube2w PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.311e-11
Identity = 40/113 (35.40%), Postives = 62/113 (54.87%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKG--DNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIY--HCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTN 445
            KR+Q+E+  L  DPP   +   K   +++  W+  + G  GT Y+G  F L   F + YPF  P+V F       H +V S G++ L IL + WSPAL++  V L++ SM ++
Sbjct:    6 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPIHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLSS 118          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2W_HUMAN (Probable ubiquitin-conjugating enzyme E2 W OS=Homo sapiens GN=UBE2W PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.311e-11
Identity = 40/113 (35.40%), Postives = 62/113 (54.87%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKG--DNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIY--HCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTN 445
            KR+Q+E+  L  DPP   +   K   +++  W+  + G  GT Y+G  F L   F + YPF  P+V F       H +V S G++ L IL + WSPAL++  V L++ SM ++
Sbjct:    6 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLSS 118          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC_ASFWA (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Warthog/Namibia/Wart80/1980) GN=UBC PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.311e-11
Identity = 38/138 (27.54%), Postives = 66/138 (47.83%), Query Frame = 2
Query:  125 IQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKD--------SWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHD 514
            +  E   L  +P ++       +++  W   + GP  T Y+GG+F   + FP +YP+ PP++ F + ++H N+   G + + IL          +WSPA  I  +LL+V S+   P+  +P     A  Y +   K D
Sbjct:    6 LMAEYRHLIENPSENFKISVNENDMTEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPRLTFTSEMWHPNIYPDGKLCISILHGDNAEEQGMTWSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYRKLMHKED 143          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UB2FB_MOUSE (NEDD8-conjugating enzyme UBE2F-B OS=Mus musculus GN=Ube2fb PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.311e-11
Identity = 44/151 (29.14%), Postives = 72/151 (47.68%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKD------SWSPALTITKVLLAVRSMFTN-PSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 550
            K +  E+AEL  + P  C       N  +     + P    YQGG F  +I  P  Y   PPKV  LT+I+H N+   G + L +L++       W+P  T+  V+  + S+FT+  + ++P+    A  +L+DK        E+  R+A+
Sbjct:   35 KLLVTEVAELEANLPWTCKVHFPDPNKLHCFQLTVSPDEGYYQGGNFQFEIEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSADGTGWAPTRTLKDVVWGLNSLFTDLLNFYDPLNIEAAEHHLQDKEDFRDKVDEYIRRYAR 185          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2Z_DANRE (Ubiquitin-conjugating enzyme E2 Z OS=Danio rerio GN=ube2z PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.236e-11
Identity = 41/122 (33.61%), Postives = 61/122 (50.00%), Query Frame = 2
Query:  122 RIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTR-----IYHCNVDSAGNVNLDIL----KDSWSPALTITKVLLAVRSMFTNPSLHN 460
            RI+R++  +  +PP      P   ++    A I GP  TPY+GG F      P DYP  PP+V  +T       ++ N    G V L IL      +WSPA +I+ VL++++S+ T    HN
Sbjct:   75 RIKRDIMSIYKEPPPGMFVVPDPHDMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLITTGHNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMTENPYHN 196          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBCX_PICAN (Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia angusta GN=PEX4 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.236e-11
Identity = 39/125 (31.20%), Postives = 62/125 (49.60%), Query Frame = 2
Query:  182 PKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLT----------------------RIYHCNVD-SAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHL 487
            P  D L+ W A I GP  +P++  ++ L+I  PT+YP  PPK+ F+                       ++ H NV+   G + LDIL+  WSPA T+   L+A+  +  NP   +P+   +A+L
Sbjct:   36 PLEDGLFRWSAVIRGPDQSPFEDALWKLEIDIPTNYPLDPPKIKFVVFGEEKIRQLQRKTSSGARKVCYKMPHPNVNFKTGEICLDILQQKWSPAWTLQSALVAIVVLLANPEPLSPLNIDMANL 160          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2Z_XENTR (Ubiquitin-conjugating enzyme E2 Z OS=Xenopus tropicalis GN=ube2z PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.920e-11
Identity = 46/152 (30.26%), Postives = 72/152 (47.37%), Query Frame = 2
Query:  122 RIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTR-----IYHCNVDSAGNVNLDIL----KDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI-AHLYLEDKAKHDQLAAEWTLRFA 547
            RI+R++  +  +PP      P   ++    A I GP  TPY+GG F      P DYP  PP+V  +T       ++ N    G V L IL      +WSPA +++ VL++++S+ T    HN   PG     +  D   +++     T+R A
Sbjct:   62 RIKRDIMSIYKEPPPGMFVVPDPHDMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSLSSVLISIQSLMTENPYHNE--PGFEQERHSGDSKNYNECIRHETIRVA 211          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2Z_XENLA (Ubiquitin-conjugating enzyme E2 Z OS=Xenopus laevis GN=ube2z PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.920e-11
Identity = 46/152 (30.26%), Postives = 72/152 (47.37%), Query Frame = 2
Query:  122 RIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTR-----IYHCNVDSAGNVNLDIL----KDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI-AHLYLEDKAKHDQLAAEWTLRFA 547
            RI+R++  +  +PP      P   ++    A I GP  TPY+GG F      P DYP  PP+V  +T       ++ N    G V L IL      +WSPA +++ VL++++S+ T    HN   PG     +  D   +++     T+R A
Sbjct:   62 RIKRDIMSIYKEPPPGMFVVPDPHDMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSLSSVLISIQSLMTENPYHNE--PGFEQERHSGDSKNYNECIRHETIRVA 211          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2Z_RAT (Ubiquitin-conjugating enzyme E2 Z OS=Rattus norvegicus GN=Ube2z PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.920e-11
Identity = 41/122 (33.61%), Postives = 61/122 (50.00%), Query Frame = 2
Query:  122 RIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTR-----IYHCNVDSAGNVNLDIL----KDSWSPALTITKVLLAVRSMFTNPSLHN 460
            RI+R++  +  +PP      P   ++    A I GP  TPY+GG F      P DYP  PP+V  +T       ++ N    G V L IL      +WSPA +I+ VL++++S+ T    HN
Sbjct:  105 RIKRDIMSIYKEPPPGMFVVPDTVDMTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMTENPYHN 226          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2Z_MOUSE (Ubiquitin-conjugating enzyme E2 Z OS=Mus musculus GN=Ube2z PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.920e-11
Identity = 41/122 (33.61%), Postives = 61/122 (50.00%), Query Frame = 2
Query:  122 RIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTR-----IYHCNVDSAGNVNLDIL----KDSWSPALTITKVLLAVRSMFTNPSLHN 460
            RI+R++  +  +PP      P   ++    A I GP  TPY+GG F      P DYP  PP+V  +T       ++ N    G V L IL      +WSPA +I+ VL++++S+ T    HN
Sbjct:  105 RIKRDIMSIYKEPPPGMFVVPDTVDMTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMTENPYHN 226          
The following BLAST results are available for this feature:
BLAST of CX676379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
UBE2W_MOUSE1.311e-1135.40Probable ubiquitin-conjugating enzyme E2 W OS=Mus ... [more]
UBE2W_HUMAN1.311e-1135.40Probable ubiquitin-conjugating enzyme E2 W OS=Homo... [more]
UBC_ASFWA1.311e-1127.54Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UB2FB_MOUSE1.311e-1129.14NEDD8-conjugating enzyme UBE2F-B OS=Mus musculus G... [more]
UBE2Z_DANRE2.236e-1133.61Ubiquitin-conjugating enzyme E2 Z OS=Danio rerio G... [more]
UBCX_PICAN2.236e-1131.20Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia a... [more]
UBE2Z_XENTR2.920e-1130.26Ubiquitin-conjugating enzyme E2 Z OS=Xenopus tropi... [more]
UBE2Z_XENLA2.920e-1130.26Ubiquitin-conjugating enzyme E2 Z OS=Xenopus laevi... [more]
UBE2Z_RAT2.920e-1133.61Ubiquitin-conjugating enzyme E2 Z OS=Rattus norveg... [more]
UBE2Z_MOUSE2.920e-1133.61Ubiquitin-conjugating enzyme E2 Z OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_69B08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69B08-C15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676379 ID=CX676379; Name=CX676379; organism=Citrus sinensis; type=EST; length=823bp
CTTGAAAGTTAAAATGGTGCGTGTTGTTGTGGACATGAACAGCGGCGGTG
GAGGTAGCGGAGTCGGAGGAACATCGACTTCATCGTGGGTCTCGACGACG
TCGGTTTCAGCATCTGGGAAGAGGATTCAGAGAGAAATGGCGGAGCTGAA
CATGGACCCACCTCAGGATTGCTCTGCTGGTCCCAAGGGTGACAATCTTT
ACAACTGGGTCGCCACCATCATTGGCCCTGCTGGAACACCATACCAAGGG
GGTATATTTTTTCTTGACATAACATTTCCAACTGATTATCCGTTCAAACC
TCCAAAGGTGGCATTTCTAACTCGAATCTACCACTGCAACGTTGATTCTG
CTGGCAATGTTAATTTGGATATCTTGAAGGACAGTTGGAGTCCAGCTCTG
ACAATTACGAAGGTGCTACTTGCAGTCAGATCAATGTTCACAAACCCTAG
CCTTCATAATCCCATTGTTCCTGGCATTGCCCACTTGTACTTAGAAGATA
AAGCTAAACATGATCAACTAGCAGCAGAGTGGACACTGCGATTTGCCAAG
TAATGAATCCAATGAAAGAGCTGACACCGCTTAACATTTCGATGTTGTTG
TAGATTCCTTATCAGCATGTCGTTATTAGTCCAAGACTGCACCCATGCCA
CTTTCTTGAATATGCCCCTAGGCATCTATAAAATGCTCTCCAACATGAAC
TGCAATGTTATCCTTGCAACTATATCACGTTTGAAAGCAACTGTGAGAAA
TTCAGCTTATTGTAAATGTCTTGCCTCATATGGTTACATCAATATTTAGT
TGCTGTGTCGAAATAAAATCATT
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