CX676379

Overview
NameCX676379
Unique NameCX676379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2Z_HUMAN (Ubiquitin-conjugating enzyme E2 Z OS=Homo sapiens GN=UBE2Z PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.920e-11
Identity = 41/122 (33.61%), Postives = 61/122 (50.00%), Query Frame = 2
Query:  122 RIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTR-----IYHCNVDSAGNVNLDIL----KDSWSPALTITKVLLAVRSMFTNPSLHN 460
            RI+R++  +  +PP      P   ++    A I GP  TPY+GG F      P DYP  PP+V  +T       ++ N    G V L IL      +WSPA +I+ VL++++S+ T    HN
Sbjct:  103 RIKRDIMSIYKEPPPGMFVVPDTVDMTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMTENPYHN 224          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC6_ASHGO (Ubiquitin-conjugating enzyme E2 6 OS=Ashbya gossypii GN=UBC6 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.920e-11
Identity = 35/109 (32.11%), Postives = 56/109 (51.38%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNL-DILKDSWSPALTITKVLLAVRSMFT 442
            KR+ +E   +  +PP    A PK DN+  W   I GP  TPY+ G +   + FP DYPF PP +  LT       ++   +++ D   D+W+P+ ++  +L  + S  T
Sbjct:    8 KRLSKEYKMMTENPPPYIVAAPKEDNILVWHYVITGPPETPYEDGQYHGTLVFPNDYPFNPPAIRMLTPNGRFRENTRLCLSMSDYHPDTWNPSWSVATILTGLLSFMT 116          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC6_KLULA (Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces lactis GN=UBC6 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.814e-11
Identity = 34/109 (31.19%), Postives = 57/109 (52.29%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNL-DILKDSWSPALTITKVLLAVRSMFT 442
            KR+ +E   +  +PP    A P  DN+  W   I GP  TPY+ G +   +TFP+DYPF PP +  +T       ++   +++ D   ++W+PA ++  +L  + S  T
Sbjct:    8 KRLTKEYKNIVNNPPPFIIAAPHEDNILEWHYVITGPPSTPYENGQYHGTLTFPSDYPFNPPAIRMITPNGRFKENTRLCLSMSDYHPEAWNPAWSVVTILNGLLSFMT 116          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC12_YEAST (NEDD8-conjugating enzyme UBC12 OS=Saccharomyces cerevisiae GN=UBC12 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.814e-11
Identity = 41/136 (30.15%), Postives = 67/136 (49.26%), Query Frame = 2
Query:  122 RIQREMAELNMDPP-----------QDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLE 496
            R++R++  L++ P             D S  PK       +  I+ P    Y  G    ++ F   YP +PPKV  L +I+H N+D  GNV L+IL++ WSPAL +  ++  +  +F  P+ ++P+    A L  E
Sbjct:   31 RLKRDLDSLDLPPTVTLNVITSPDSADRSQSPK-------LEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCE 159          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC7_WHEAT (Ubiquitin-conjugating enzyme E2 7 OS=Triticum aestivum GN=UBC7 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.982e-11
Identity = 33/102 (32.35%), Postives = 54/102 (52.94%), Query Frame = 2
Query:  194 NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNV------------NLDILKDSWSPALTITKVLLAVRSMFTNPSLHNP 463
            N++ W  TIIGP  T Y GG F   ++FP +YP  PP V F + ++H NV   G V              ++  + W+P  T+  ++L++ SM ++P+  +P
Sbjct:   36 NVFEWQVTIIGPPETLYDGGYFNAIMSFPQNYPNSPPTVRFTSEMWHPNVYPDGRVCISIHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESP 137          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC6_SCHPO (Ubiquitin-conjugating enzyme E2 6 OS=Schizosaccharomyces pombe GN=ubc6 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.982e-11
Identity = 34/113 (30.09%), Postives = 58/113 (51.33%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNL-DILKDSWSPALTITKVLLAVRSMFTNPSL 454
            KR+ +E   L  +P +   A P  +N+  W   I GP  TPY+GG +   + FP DYPFKPP +  +T       ++   ++  D    SW+P+  ++ +L+ + S  T+  +
Sbjct:    8 KRLMKEYLALQKNPVELVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPPDYPFKPPAIRMITPSGRFQTNTRLCLSFSDFHPKSWNPSWMVSTILVGLVSFMTSDEI 120          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2W_DANRE (Probable ubiquitin-conjugating enzyme E2 W OS=Danio rerio GN=ube2w PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.506e-11
Identity = 39/113 (34.51%), Postives = 61/113 (53.98%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKG--DNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIY--HCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTN 445
            KR+Q+E+  L  DPP   +   +   + +  W   + G  GT Y+G  F L   F + YPF+ P+V F       H +V S G++ L IL + WSPAL++  V L++ SM ++
Sbjct:    6 KRLQKELLALQNDPPAGMTLNERSVQNTITEWFIDMEGAQGTVYEGEKFQLLFKFSSRYPFESPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLSS 118          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC6_CANGA (Ubiquitin-conjugating enzyme E2 6 OS=Candida glabrata GN=UBC6 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.497e-11
Identity = 34/109 (31.19%), Postives = 57/109 (52.29%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNL-DILKDSWSPALTITKVLLAVRSMFT 442
            KR+ +E   +  +PP    A P  +N+  W   I GP  TPY GG +   +TFP+DYP+KPP +  +T       ++   +++ D   D+W+P  ++  +L  + S  T
Sbjct:    8 KRLTKEYKMMVENPPPFIIARPNEENILEWHYVISGPPDTPYDGGQYHGTLTFPSDYPYKPPAIRMITPNGRFKENTRLCLSMSDYHPDTWNPGWSVATILNGLLSFMT 116          
The following BLAST results are available for this feature:
BLAST of CX676379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
UBE2Z_HUMAN2.920e-1133.61Ubiquitin-conjugating enzyme E2 Z OS=Homo sapiens ... [more]
UBC6_ASHGO2.920e-1132.11Ubiquitin-conjugating enzyme E2 6 OS=Ashbya gossyp... [more]
UBC6_KLULA3.814e-1131.19Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces... [more]
UBC12_YEAST3.814e-1130.15NEDD8-conjugating enzyme UBC12 OS=Saccharomyces ce... [more]
UBC7_WHEAT4.982e-1132.35Ubiquitin-conjugating enzyme E2 7 OS=Triticum aest... [more]
UBC6_SCHPO4.982e-1130.09Ubiquitin-conjugating enzyme E2 6 OS=Schizosacchar... [more]
UBE2W_DANRE6.506e-1134.51Probable ubiquitin-conjugating enzyme E2 W OS=Dani... [more]
UBC6_CANGA8.497e-1131.19Ubiquitin-conjugating enzyme E2 6 OS=Candida glabr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_69B08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69B08-C15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676379 ID=CX676379; Name=CX676379; organism=Citrus sinensis; type=EST; length=823bp
CTTGAAAGTTAAAATGGTGCGTGTTGTTGTGGACATGAACAGCGGCGGTG
GAGGTAGCGGAGTCGGAGGAACATCGACTTCATCGTGGGTCTCGACGACG
TCGGTTTCAGCATCTGGGAAGAGGATTCAGAGAGAAATGGCGGAGCTGAA
CATGGACCCACCTCAGGATTGCTCTGCTGGTCCCAAGGGTGACAATCTTT
ACAACTGGGTCGCCACCATCATTGGCCCTGCTGGAACACCATACCAAGGG
GGTATATTTTTTCTTGACATAACATTTCCAACTGATTATCCGTTCAAACC
TCCAAAGGTGGCATTTCTAACTCGAATCTACCACTGCAACGTTGATTCTG
CTGGCAATGTTAATTTGGATATCTTGAAGGACAGTTGGAGTCCAGCTCTG
ACAATTACGAAGGTGCTACTTGCAGTCAGATCAATGTTCACAAACCCTAG
CCTTCATAATCCCATTGTTCCTGGCATTGCCCACTTGTACTTAGAAGATA
AAGCTAAACATGATCAACTAGCAGCAGAGTGGACACTGCGATTTGCCAAG
TAATGAATCCAATGAAAGAGCTGACACCGCTTAACATTTCGATGTTGTTG
TAGATTCCTTATCAGCATGTCGTTATTAGTCCAAGACTGCACCCATGCCA
CTTTCTTGAATATGCCCCTAGGCATCTATAAAATGCTCTCCAACATGAAC
TGCAATGTTATCCTTGCAACTATATCACGTTTGAAAGCAACTGTGAGAAA
TTCAGCTTATTGTAAATGTCTTGCCTCATATGGTTACATCAATATTTAGT
TGCTGTGTCGAAATAAAATCATT
back to top