CX676379

Overview
NameCX676379
Unique NameCX676379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.652e-46
Identity = 80/143 (55.94%), Postives = 113/143 (79.02%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            KRIQ+E+++L  DPP  CSAGP GD+L++W ATI+GP  + YQGG+FFL + FPTDYPFKPPK+AF T+IYH N++S G++ LDIL+  WSPALT++KVLL++ S+  +P+  +P+VP IA +Y  DK K+++ A EWT ++A
Sbjct:    4 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYA 146          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.229e-46
Identity = 81/143 (56.64%), Postives = 113/143 (79.02%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            KRI +E+ +L  DPP  CSAGP GD++++W ATI+GP  +PYQGG+FFL I FPTDYPFKPPKVAF TRIYH N++S G++ LDIL+  WSPALTI+KVLL++ S+  +P+  +P+VP IA +Y  D+ K+++++ EWT ++A
Sbjct:    4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 146          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.812e-45
Identity = 80/143 (55.94%), Postives = 113/143 (79.02%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            KRI +E+++L  DPP  CSAGP GD++++W ATI+GP  +PYQGG+FFL I FPTDYPFKPPKVAF TRIYH N++S  ++ LDIL+  WSPALTI+KVLL++ S+  +P+  +P+VP IA +Y  D+ K+++++ EWT ++A
Sbjct:    4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNDSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 146          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.367e-45
Identity = 78/143 (54.55%), Postives = 111/143 (77.62%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            +RI +E+ EL  DPP  CSAGP G+++++W ATI+GP  +PY GG+F ++I FP DYPFKPPKV F T+++H N++S GN+ LDILKD WSPALTI+KVLL++ S+ T+P+  +P+VP IAH+Y  DK K++ +A  WT ++A
Sbjct:    4 RRILKELKELQRDPPVSCSAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKYEAMARSWTQKYA 146          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.038e-45
Identity = 77/143 (53.85%), Postives = 110/143 (76.92%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            KRI +E+ +L  DPP  CSAGP GD+++ W ATI+GPA +P+ GG+F + I FP DYPFKPPKVAF T++YH N++S G++ LDILK+ WSPALT++KVLL++ S+ T+P+  +P+VP IAH+Y  D+ K++  A  WT ++A
Sbjct:    4 KRINKELRDLQRDPPVSCSAGPTGDDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIYKTDRVKYESTAQSWTQKYA 146          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.534e-44
Identity = 80/143 (55.94%), Postives = 110/143 (76.92%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            KRI +E+ +L  DPP  CSAGP G+++++W ATI+GP  +PYQGG FFL I FPT+YPFKPPKV F TRIYH NV+S G++ LDIL+  WSPALTI+KVLL++ S+  +P+  +P+VP IA +Y  D+ K+++ A EWT ++A
Sbjct:    4 KRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTAREWTQKYA 146          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.534e-44
Identity = 80/143 (55.94%), Postives = 110/143 (76.92%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            KRI +E+ +L  DPP  CSAGP G+++++W ATI+GP  +PYQGG FFL I FPT+YPFKPPKV F TRIYH NV+S G++ LDIL+  WSPALTI+KVLL++ S+  +P+  +P+VP IA +Y  D+ K+++ A EWT ++A
Sbjct:    4 KRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTAREWTQKYA 146          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.617e-44
Identity = 77/143 (53.85%), Postives = 111/143 (77.62%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            KRI +E+ +L  DPP  CSAGP  +++++W ATI+GPA +PY GG+F + I FP DYPFKPPKVAF T+++H N++S G++ LDILK+ WSPALTI+KVLL++ S+ T+P+  +P+VP IAH+Y  D+AK++  A  WT ++A
Sbjct:    4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARNWTQKYA 146          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.617e-44
Identity = 77/143 (53.85%), Postives = 111/143 (77.62%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            KRI +E+ +L  DPP  CSAGP  +++++W ATI+GP+ +PY GG+F + I FP DYPFKPPKVAF T+++H NV+S G++ LDILK+ WSPALTI+KVLL++ S+ T+P+  +P+VP IAH+Y  D+AK++  A  WT ++A
Sbjct:    4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYA 146          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.830e-44
Identity = 76/143 (53.15%), Postives = 110/143 (76.92%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            KRI +E+ +L  DPP  CSAGP  +++++W ATI+GP  +PY GG+F + I FP DYPFKPPKVAF T+++H N++S G++ LDILK+ WSPALTI+KVLL++ S+ T+P+  +P+VP IAH+Y  D+AK++  A  WT ++A
Sbjct:    4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 146          
The following BLAST results are available for this feature:
BLAST of CX676379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
UB2D1_BOVIN3.652e-4655.94Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
UB2D2_PIG6.229e-4656.64Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa G... [more]
UB2D3_BOVIN1.812e-4555.94Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G... [more]
UBC29_ARATH2.367e-4554.55Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC30_ARATH4.038e-4553.85Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
U2D2B_RAT1.534e-4455.94Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]
U2D2B_MOUSE1.534e-4455.94Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]
UBC8_ARATH2.617e-4453.85Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC28_ARATH2.617e-4453.85Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC4_SOLLC5.830e-4453.15Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_69B08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69B08-C15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676379 ID=CX676379; Name=CX676379; organism=Citrus sinensis; type=EST; length=823bp
CTTGAAAGTTAAAATGGTGCGTGTTGTTGTGGACATGAACAGCGGCGGTG
GAGGTAGCGGAGTCGGAGGAACATCGACTTCATCGTGGGTCTCGACGACG
TCGGTTTCAGCATCTGGGAAGAGGATTCAGAGAGAAATGGCGGAGCTGAA
CATGGACCCACCTCAGGATTGCTCTGCTGGTCCCAAGGGTGACAATCTTT
ACAACTGGGTCGCCACCATCATTGGCCCTGCTGGAACACCATACCAAGGG
GGTATATTTTTTCTTGACATAACATTTCCAACTGATTATCCGTTCAAACC
TCCAAAGGTGGCATTTCTAACTCGAATCTACCACTGCAACGTTGATTCTG
CTGGCAATGTTAATTTGGATATCTTGAAGGACAGTTGGAGTCCAGCTCTG
ACAATTACGAAGGTGCTACTTGCAGTCAGATCAATGTTCACAAACCCTAG
CCTTCATAATCCCATTGTTCCTGGCATTGCCCACTTGTACTTAGAAGATA
AAGCTAAACATGATCAACTAGCAGCAGAGTGGACACTGCGATTTGCCAAG
TAATGAATCCAATGAAAGAGCTGACACCGCTTAACATTTCGATGTTGTTG
TAGATTCCTTATCAGCATGTCGTTATTAGTCCAAGACTGCACCCATGCCA
CTTTCTTGAATATGCCCCTAGGCATCTATAAAATGCTCTCCAACATGAAC
TGCAATGTTATCCTTGCAACTATATCACGTTTGAAAGCAACTGTGAGAAA
TTCAGCTTATTGTAAATGTCTTGCCTCATATGGTTACATCAATATTTAGT
TGCTGTGTCGAAATAAAATCATT
back to top