CX676379

Overview
NameCX676379
Unique NameCX676379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 7.615e-44
Identity = 75/143 (52.45%), Postives = 111/143 (77.62%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            KRI +E+ +L  DPP +CSAGP  +++++W ATI+GP  +PY GG+F + I FP DYPFKPPKV+F T++YH N++S G++ LDILK+ WSPALTI+KVLL++ S+ T+P+  +P+VP IAH+Y  D++K++  A  WT ++A
Sbjct:    4 KRILKELKDLQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYESTARSWTQKYA 146          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.945e-44
Identity = 76/143 (53.15%), Postives = 110/143 (76.92%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            KRI +E+ +L  DPP  CSAGP  +++++W ATI+GP+ +PY GG+F + I FP DYPFKPPKVAF T+++H N++S G++ LDILK+ WSPALTI+KVLL++ S+ T+P+  +P+VP IAH+Y  DK K++  A  WT ++A
Sbjct:    4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARTWTQKYA 146          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.299e-43
Identity = 76/143 (53.15%), Postives = 110/143 (76.92%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            KRI +E+ +L  DPP  CSAGP  +++++W ATI+GP+ +PY GG+F + I FP DYPFKPPKVAF T+++H N++S G++ LDILK+ WSPALTI+KVLL++ S+ T+P+  +P+VP IAH+Y  DK K++  A  WT ++A
Sbjct:    4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARSWTQKYA 146          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.033e-41
Identity = 74/144 (51.39%), Postives = 109/144 (75.69%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGD-NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            KRI RE+ ++   PP +CSAGP  + ++++W ATI+GP  +PY GG+F + I F +DYPFKPPKV F T++YH N+DS G++ LDILK+ WSPA T +KVLL++ S+ T+P+ ++P+VP IAHLY  DK+K++  A +WT ++A
Sbjct:    4 KRISRELRDMQRHPPANCSAGPVAEEDIFHWQATIMGPHDSPYSGGVFTVSIDFSSDYPFKPPKVNFKTKVYHPNIDSKGSICLDILKEQWSPAPTTSKVLLSICSLLTDPNPNDPLVPEIAHLYKVDKSKYESTAQKWTQKYA 147          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.660e-31
Identity = 61/125 (48.80%), Postives = 84/125 (67.20%), Query Frame = 2
Query:  173 SAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            S G   +N+Y W A I GP GTPY+GG+F L I FPTDYPFKPPK  F T IYH N++  G++ ++ILKD W+PAL + KVLL++  +   P+  +P+VP I  L+  ++ + DQ A E+T R A
Sbjct:   28 SIGQNSNNIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTPIYHPNINDEGSICMNILKDKWTPALMVEKVLLSILLLLEKPNPDDPLVPEIGQLFKNNRFQFDQRAREFTARHA 152          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBCB_DICDI (Ubiquitin conjugating enzyme E2 B OS=Dictyostelium discoideum GN=ubcB PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.919e-29
Identity = 59/144 (40.97%), Postives = 88/144 (61.11%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 550
            KR+Q+E+ ++   PP  CSA    DNL  W AT+ GP G+P++ G+F +DI  P DYPFKPP + F T+IYH N+ ++       +  +WSP L I  VL  +RS+ T+P+  NP+   IA  +  D+   ++ A EWT ++AK
Sbjct:    5 KRLQKEITDMLKTPPSWCSAHLVDDNLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVFSTWSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNKTAKEWTKKYAK 148          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.704e-27
Identity = 60/144 (41.67%), Postives = 91/144 (63.19%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 550
            KRI +E  +L  DP    +A P  DNL  +  TI GP  +PY+ GIF L++  P DYP + PKV FLT+IYH N+D  G + LD+LK +WSPAL I  VLL+++++  +P+ ++P+   +A  +++++      A EWT  +AK
Sbjct:    6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAK 149          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.907e-27
Identity = 59/143 (41.26%), Postives = 88/143 (61.54%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            +RI +E   L  +P    SA P  DN+  +   I+GP  +PY+GG+F L++  P +YP   PKV FLT+IYH N+D  G + LDILKD WSPAL I  VLL+++++ + P+  +P+   IA  +  ++A+    A EWT  +A
Sbjct:    8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVDTAKEWTRLYA 150          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.959e-27
Identity = 58/143 (40.56%), Postives = 89/143 (62.24%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            +RI +E   L  +P    SA P  +N+  +   I+GP  +PY+GG+F L++  P +YP   PKV FLT+IYH N+D  G + LDILKD WSPAL I  VLL+++++ + P+  +P+   IA  +  ++A+  + A EWT  +A
Sbjct:    8 RRIIKETQRLLSEPAPGISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWTRLYA 150          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2C_DICDI (Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum GN=ube2c PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.351e-26
Identity = 54/124 (43.55%), Postives = 78/124 (62.90%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLY 490
            KR+Q E+  L M P    SA P GDN++NW+ TI G   T Y+   F + + FPTDYP+KPP V F T+ +H NVD+ GN+ LDILKD WSP   +  +L++++S+   P+  +P+    A L+
Sbjct:    9 KRLQSELMNLMMGPSPGISAFPDGDNIFNWIGTIQGAKDTVYEQMEFKMSLKFPTDYPYKPPTVKFETQCFHPNVDNNGNICLDILKDKWSPVYNVRSLLISIQSLLGEPNNESPLNSYAASLW 132          
The following BLAST results are available for this feature:
BLAST of CX676379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
UBC11_ARATH7.615e-4452.45Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC9_ARATH9.945e-4453.15SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC10_ARATH1.299e-4353.15Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC12_ARATH6.033e-4151.39Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]
UBC31_ARATH5.660e-3148.80Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
UBCB_DICDI6.919e-2940.97Ubiquitin conjugating enzyme E2 B OS=Dictyostelium... [more]
UBC13_YEAST1.704e-2741.67Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]
UBC35_ARATH2.907e-2741.26Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBC36_ARATH4.959e-2740.56Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBE2C_DICDI9.351e-2643.55Probable ubiquitin-conjugating enzyme E2 C OS=Dict... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_69B08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69B08-C15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676379 ID=CX676379; Name=CX676379; organism=Citrus sinensis; type=EST; length=823bp
CTTGAAAGTTAAAATGGTGCGTGTTGTTGTGGACATGAACAGCGGCGGTG
GAGGTAGCGGAGTCGGAGGAACATCGACTTCATCGTGGGTCTCGACGACG
TCGGTTTCAGCATCTGGGAAGAGGATTCAGAGAGAAATGGCGGAGCTGAA
CATGGACCCACCTCAGGATTGCTCTGCTGGTCCCAAGGGTGACAATCTTT
ACAACTGGGTCGCCACCATCATTGGCCCTGCTGGAACACCATACCAAGGG
GGTATATTTTTTCTTGACATAACATTTCCAACTGATTATCCGTTCAAACC
TCCAAAGGTGGCATTTCTAACTCGAATCTACCACTGCAACGTTGATTCTG
CTGGCAATGTTAATTTGGATATCTTGAAGGACAGTTGGAGTCCAGCTCTG
ACAATTACGAAGGTGCTACTTGCAGTCAGATCAATGTTCACAAACCCTAG
CCTTCATAATCCCATTGTTCCTGGCATTGCCCACTTGTACTTAGAAGATA
AAGCTAAACATGATCAACTAGCAGCAGAGTGGACACTGCGATTTGCCAAG
TAATGAATCCAATGAAAGAGCTGACACCGCTTAACATTTCGATGTTGTTG
TAGATTCCTTATCAGCATGTCGTTATTAGTCCAAGACTGCACCCATGCCA
CTTTCTTGAATATGCCCCTAGGCATCTATAAAATGCTCTCCAACATGAAC
TGCAATGTTATCCTTGCAACTATATCACGTTTGAAAGCAACTGTGAGAAA
TTCAGCTTATTGTAAATGTCTTGCCTCATATGGTTACATCAATATTTAGT
TGCTGTGTCGAAATAAAATCATT
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