CX676379

Overview
NameCX676379
Unique NameCX676379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2N_DROME (Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.083e-25
Identity = 53/143 (37.06%), Postives = 89/143 (62.24%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            +RI +E   L  +P    +A P  +N   +   + GP  +P++GG+F L++  P DYP   PKV F+T+IYH N+D  G + LD+LKD WSPAL I  +LL+++++ + P+  +P+   +A L+  ++A+  + A EWT ++A
Sbjct:    6 RRIIKETQRLMQEPVPGINAIPDENNARYFHVIVTGPNDSPFEGGVFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDVLKDKWSPALQIRTILLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAREWTQKYA 148          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC27_ARATH (Ubiquitin carrier protein E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.083e-25
Identity = 62/147 (42.18%), Postives = 89/147 (60.54%), Query Frame = 2
Query:  122 RIQREMAELNMDPPQDCSA---GPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDS-AGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 550
            RIQ+E+ +   +  QD S     PK DNL     TI GP GTPY+GG F +DIT P  YPF+PPK+ F T+++H N+ S +G + LDILKD WSPALT+   L++++++ + P   +P    +A  Y+++       A  WT  FAK
Sbjct:    6 RIQKELQDCERN--QDSSGIRVCPKSDNLTRLTGTIPGPIGTPYEGGTFQIDITMPDGYPFEPPKMQFSTKVWHPNISSQSGAICLDILKDQWSPALTLKTALVSIQALLSAPEPKDPQDAVVAEQYMKNYQVFVSTARYWTETFAK 150          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.083e-25
Identity = 58/143 (40.56%), Postives = 85/143 (59.44%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            KRI +E+  L  DPP    A P  DNL  +  T+ GP  + Y+GG F L++  P +YP  PP V FLT+IYH NVD  G + L  LK  WSPAL I  VLL+++++   P+  +P+   +A ++ E++ +    A EWT ++A
Sbjct:    5 KRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKENEPQAIANAREWTKKYA 147          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.721e-25
Identity = 57/144 (39.58%), Postives = 85/144 (59.03%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 550
            KRI +E   L  +P    SA P  DN   +   I GP  +P++GG+F L++    DYP   PKV FLT+IYH N+D  G + LDILKD WSPAL I  VLL+++++ + P+  +P+   +A  +  ++ +    A EWT  +A+
Sbjct:    6 KRIIKETQRLMTEPAPGISATPATDNFRYFKVAISGPLDSPFEGGVFNLELFLTDDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEHWKTNEKEAMARAREWTRLYAE 149          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.721e-25
Identity = 57/144 (39.58%), Postives = 84/144 (58.33%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDS-AGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            +RI +E+A++  D           D++ +      GP GTPY+GG F +DI  P DYPF+PPK+ F T+IYH NV S  G + LDILKD WSP  T+   L++++S+   P   NP    +A +YL++  +  + A EWT  +A
Sbjct:    7 RRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVYLQNYQQFVRTAREWTSSYA 150          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2T_XENLA (Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevis GN=ube2t PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.916e-25
Identity = 59/146 (40.41%), Postives = 90/146 (61.64%), Query Frame = 2
Query:  122 RIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDIL----KDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            R++RE+  LN +PP          N+ +  A IIG +G+PY+GGIF L+I  P  YPF+PPK+ FLT IYH N+DSAG + LDIL    K +W PAL I+ VL +++ + + P+  +P++  I+  +  ++A     A +WT + A
Sbjct:    6 RLKRELQLLNKEPPPGVICWQNESNMDDLRAQIIGGSGSPYEGGIFNLEIIVPERYPFEPPKIRFLTPIYHPNIDSAGRICLDILKLPPKGAWRPALNISTVLTSIQLLMSEPNPDDPLMADISSEFKYNRAVFFSNAKKWTEKHA 151          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.034e-24
Identity = 55/145 (37.93%), Postives = 83/145 (57.24%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDS-WSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 550
            +R+ +E ++L   P  D       DNL++W  T +GP+ + Y GG F   + FP DYPF+PP + F TRIYH N DS GNV L ILK   + P++ +  VL  +  +   P+  +P+V  IA  Y  D+   D++A ++  +FAK
Sbjct:   10 RRLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDKIARDYVEQFAK 154          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC2_YARLI (Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica GN=UBC2 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.764e-24
Identity = 54/144 (37.50%), Postives = 84/144 (58.33%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLE-----DKAKHDQLAAEWT 535
            +R+ R+   +  DPPQ  SA P  DN+  W A IIGPA TP++ G F + + F   YP KPP V F+++++H NV S+G + LDIL++ WSP   +  +L +V+S+  +P+  +P     + LY +     +K   D + A WT
Sbjct:    7 RRLMRDFKRMQQDPPQGVSASPVADNVLTWNAVIIGPAETPFEDGTFRMVLQFDEQYPNKPPAVKFVSQMFHPNVYSSGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNTSSPANVEASMLYKDHRQQYEKRVRDTVEASWT 150          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.008e-24
Identity = 52/144 (36.11%), Postives = 83/144 (57.64%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKH-----DQLAAEWT 535
            KR+ R+   L  DPP   S  P+ +N+  W A I GP  TP+ GG F L + F  DYP KPP V F++R++H N+ + G++ LDIL++ WSP   +  +L +++S+  +P+ ++P     A +Y E K ++     D +   WT
Sbjct:    7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWT 150          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.929e-24
Identity = 50/133 (37.59%), Postives = 82/133 (61.65%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQ 517
            +R+ R+   L  DPP   S  P  +N+  W A I GP GTP++ G F L I F  +YP KPP V FL++++H NV + G++ LDIL++ WSP   ++ +L +++S+   P+ ++P     A LY E+K ++++
Sbjct:    7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEK 139          
The following BLAST results are available for this feature:
BLAST of CX676379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
UBE2N_DROME2.083e-2537.06Ubiquitin-conjugating enzyme E2 N OS=Drosophila me... [more]
UBC27_ARATH2.083e-2542.18Ubiquitin carrier protein E2 27 OS=Arabidopsis tha... [more]
UBC13_SCHPO2.083e-2540.56Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UBE2N_DICDI2.721e-2539.58Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UBC1_SCHPO2.721e-2539.58Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]
UBE2T_XENLA7.916e-2540.41Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevi... [more]
UBC14_SCHPO1.034e-2437.93Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]
UBC2_YARLI1.764e-2437.50Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipo... [more]
UBC1_ARATH3.008e-2436.11Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBE2B_RAT3.929e-2437.59Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_69B08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69B08-C15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676379 ID=CX676379; Name=CX676379; organism=Citrus sinensis; type=EST; length=823bp
CTTGAAAGTTAAAATGGTGCGTGTTGTTGTGGACATGAACAGCGGCGGTG
GAGGTAGCGGAGTCGGAGGAACATCGACTTCATCGTGGGTCTCGACGACG
TCGGTTTCAGCATCTGGGAAGAGGATTCAGAGAGAAATGGCGGAGCTGAA
CATGGACCCACCTCAGGATTGCTCTGCTGGTCCCAAGGGTGACAATCTTT
ACAACTGGGTCGCCACCATCATTGGCCCTGCTGGAACACCATACCAAGGG
GGTATATTTTTTCTTGACATAACATTTCCAACTGATTATCCGTTCAAACC
TCCAAAGGTGGCATTTCTAACTCGAATCTACCACTGCAACGTTGATTCTG
CTGGCAATGTTAATTTGGATATCTTGAAGGACAGTTGGAGTCCAGCTCTG
ACAATTACGAAGGTGCTACTTGCAGTCAGATCAATGTTCACAAACCCTAG
CCTTCATAATCCCATTGTTCCTGGCATTGCCCACTTGTACTTAGAAGATA
AAGCTAAACATGATCAACTAGCAGCAGAGTGGACACTGCGATTTGCCAAG
TAATGAATCCAATGAAAGAGCTGACACCGCTTAACATTTCGATGTTGTTG
TAGATTCCTTATCAGCATGTCGTTATTAGTCCAAGACTGCACCCATGCCA
CTTTCTTGAATATGCCCCTAGGCATCTATAAAATGCTCTCCAACATGAAC
TGCAATGTTATCCTTGCAACTATATCACGTTTGAAAGCAACTGTGAGAAA
TTCAGCTTATTGTAAATGTCTTGCCTCATATGGTTACATCAATATTTAGT
TGCTGTGTCGAAATAAAATCATT
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