CX676379

Overview
NameCX676379
Unique NameCX676379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.753e-24
Identity = 49/133 (36.84%), Postives = 82/133 (61.65%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQ 517
            +R+ R+   L  DPP   S  P  +N+  W A I GP GTP++ G F L I F  +YP KPP V F+++++H NV + G++ LDIL++ WSP   ++ +L +++S+   P+ ++P     A LY E+K ++++
Sbjct:    7 RRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEK 139          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 8.753e-24
Identity = 49/133 (36.84%), Postives = 82/133 (61.65%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQ 517
            +R+ R+   L  DPP   S  P  +N+  W A I GP GTP++ G F L I F  +YP KPP V F+++++H NV + G++ LDIL++ WSP   ++ +L +++S+   P+ ++P     A LY E+K ++++
Sbjct:    7 RRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEK 139          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.753e-24
Identity = 49/137 (35.77%), Postives = 83/137 (60.58%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAE 529
            KR+ R+   L  DPP   S  P+ +N+  W A I GP  TP+ GG F L + F  DYP KPP V F++R++H N+ + G++ LDIL++ WSP   +  +L +++S+  +P+ ++P     A ++ E+K ++++   E
Sbjct:    7 KRLMRDFKRLQHDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 143          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.143e-23
Identity = 54/143 (37.76%), Postives = 83/143 (58.04%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            +RI +E   L  +P     A P   N   +   I GP  +P++GG F L++  P +YP   PKV F+T+IYH NVD  G + LDILKD WSPAL I  VLL+++++ + P+  +P+   +A  +  ++A+  + A  WT  +A
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNEAQAIETARAWTRLYA 148          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC2_CANAL (Ubiquitin-conjugating enzyme E2 2 OS=Candida albicans GN=UBC2 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.143e-23
Identity = 48/129 (37.21%), Postives = 82/129 (63.57%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKA 505
            +R+ R+   +  DPP   SA P  DN+  W A IIGP+ TP++ G F L ++F   YP KPP+V F++ ++H NV ++G + LDIL++ WSP   ++ +L +V+S+  +P++ +P     A+LY + ++
Sbjct:    7 RRLMRDFKRMQQDPPSGVSASPLPDNVMKWNAVIIGPSDTPFEDGTFRLLLSFDEQYPNKPPQVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSVQSLLNDPNISSPANVEAANLYKDHRS 135          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.493e-23
Identity = 54/143 (37.76%), Postives = 83/143 (58.04%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            +RI +E   L  +P     A P   N   +   I GP  +P++GG F L++  P +YP   PKV F+T+IYH NVD  G + LDILKD WSPAL I  VLL+++++ + P+  +P+   +A  +  ++A+  + A  WT  +A
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.493e-23
Identity = 54/143 (37.76%), Postives = 83/143 (58.04%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            +RI +E   L  +P     A P   N   +   I GP  +P++GG F L++  P +YP   PKV F+T+IYH NVD  G + LDILKD WSPAL I  VLL+++++ + P+  +P+   +A  +  ++A+  + A  WT  +A
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.493e-23
Identity = 54/143 (37.76%), Postives = 83/143 (58.04%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            +RI +E   L  +P     A P   N   +   I GP  +P++GG F L++  P +YP   PKV F+T+IYH NVD  G + LDILKD WSPAL I  VLL+++++ + P+  +P+   +A  +  ++A+  + A  WT  +A
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.493e-23
Identity = 54/143 (37.76%), Postives = 83/143 (58.04%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 547
            +RI +E   L  +P     A P   N   +   I GP  +P++GG F L++  P +YP   PKV F+T+IYH NVD  G + LDILKD WSPAL I  VLL+++++ + P+  +P+   +A  +  ++A+  + A  WT  +A
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2C_HUMAN (Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.547e-23
Identity = 52/124 (41.94%), Postives = 77/124 (62.10%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLY 490
            KR+Q+E+  L M   +  SA P+ DNL+ WV TI G AGT Y+   + L + FP+ YP+  P V FLT  YH NVD+ GN+ LDILK+ WS    +  +LL+++S+   P++ +P+    A L+
Sbjct:   33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW 156          
The following BLAST results are available for this feature:
BLAST of CX676379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
UBE2A_MOUSE8.753e-2436.84Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN8.753e-2436.84Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBC2_MEDSA8.753e-2435.77Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBE2N_RAT1.143e-2337.76Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBC2_CANAL1.143e-2337.21Ubiquitin-conjugating enzyme E2 2 OS=Candida albic... [more]
UBE2N_PONAB1.493e-2337.76Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE1.493e-2337.76Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_HUMAN1.493e-2337.76Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_BOVIN1.493e-2337.76Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBE2C_HUMAN2.547e-2341.94Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_69B08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69B08-C15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676379 ID=CX676379; Name=CX676379; organism=Citrus sinensis; type=EST; length=823bp
CTTGAAAGTTAAAATGGTGCGTGTTGTTGTGGACATGAACAGCGGCGGTG
GAGGTAGCGGAGTCGGAGGAACATCGACTTCATCGTGGGTCTCGACGACG
TCGGTTTCAGCATCTGGGAAGAGGATTCAGAGAGAAATGGCGGAGCTGAA
CATGGACCCACCTCAGGATTGCTCTGCTGGTCCCAAGGGTGACAATCTTT
ACAACTGGGTCGCCACCATCATTGGCCCTGCTGGAACACCATACCAAGGG
GGTATATTTTTTCTTGACATAACATTTCCAACTGATTATCCGTTCAAACC
TCCAAAGGTGGCATTTCTAACTCGAATCTACCACTGCAACGTTGATTCTG
CTGGCAATGTTAATTTGGATATCTTGAAGGACAGTTGGAGTCCAGCTCTG
ACAATTACGAAGGTGCTACTTGCAGTCAGATCAATGTTCACAAACCCTAG
CCTTCATAATCCCATTGTTCCTGGCATTGCCCACTTGTACTTAGAAGATA
AAGCTAAACATGATCAACTAGCAGCAGAGTGGACACTGCGATTTGCCAAG
TAATGAATCCAATGAAAGAGCTGACACCGCTTAACATTTCGATGTTGTTG
TAGATTCCTTATCAGCATGTCGTTATTAGTCCAAGACTGCACCCATGCCA
CTTTCTTGAATATGCCCCTAGGCATCTATAAAATGCTCTCCAACATGAAC
TGCAATGTTATCCTTGCAACTATATCACGTTTGAAAGCAACTGTGAGAAA
TTCAGCTTATTGTAAATGTCTTGCCTCATATGGTTACATCAATATTTAGT
TGCTGTGTCGAAATAAAATCATT
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