CX676379

Overview
NameCX676379
Unique NameCX676379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.651e-22
Identity = 48/131 (36.64%), Postives = 81/131 (61.83%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKH 511
            +R+ R+   +  DPP   SA P  DN+  W A IIGPA TP++ G F L + F   YP KPP+V F+++++H NV + G + LDIL++ WSP   +  VL +++S+  +P+  +P     ++LY +++ ++
Sbjct:    7 RRLMRDFKRMQTDPPAGVSASPIPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISQMFHPNVYANGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRREY 137          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.651e-22
Identity = 47/131 (35.88%), Postives = 79/131 (60.31%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKH 511
            +R+ R+   +  DPP   SA P  DN+  W A IIGPA TP++ G F L + F   YP KPP V F+++++H NV   G + LDIL++ WSP   +  +L +++S+  +P+  +P     ++LY +++ ++
Sbjct:    7 RRLMRDFKRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYRDNRKEY 137          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.651e-22
Identity = 47/131 (35.88%), Postives = 79/131 (60.31%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKH 511
            +R+ R+   +  DPP   SA P  DN+  W A IIGPA TP++ G F L + F   YP KPP V F+++++H NV   G + LDIL++ WSP   +  +L +++S+  +P+  +P     ++LY +++ ++
Sbjct:    7 RRLMRDFKRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYKDNRKEY 137          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC2_SCHPO (Ubiquitin-conjugating enzyme E2 2 OS=Schizosaccharomyces pombe GN=rhp6 PE=1 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 2.156e-22
Identity = 49/131 (37.40%), Postives = 79/131 (60.31%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKH 511
            +R+ R+   +  DPP   SA P  DN+  W A IIGPA TP++ G F L ++F   YP KPP V F++ ++H NV + G + LDIL++ WSP   +  +L +++S+  +P+  +P     A L+ E+K ++
Sbjct:    7 RRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNKPPLVKFVSTMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNNASPANAEAAQLHRENKKEY 137          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC2_CANGA (Ubiquitin-conjugating enzyme E2 2 OS=Candida glabrata GN=UBC2 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.156e-22
Identity = 50/131 (38.17%), Postives = 79/131 (60.31%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKH 511
            +R+ R+   +  D P   SA P  DN+  W A IIGPA TPY+ G F L + F  DYP KPP V FL+ ++H NV + G + LDIL++ W+P   +  +L +++S+F +P+  +P     A L+ + K+++
Sbjct:    7 RRLMRDFKRMKEDSPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEDYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQY 137          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2T_HUMAN (Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens GN=UBE2T PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.677e-22
Identity = 52/147 (35.37%), Postives = 88/147 (59.86%), Query Frame = 2
Query:  122 RIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDIL----KDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 550
            R++RE+  L  +PP   +     D + +  A I+G A TPY+ G+F L++  P  YPF+PP++ FLT IYH N+DSAG + LD+L    K +W P+L I  VL +++ + + P+  +P++  I+  +  +K    + A +WT + A+
Sbjct:    6 RLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHAR 152          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBE2T_MOUSE (Ubiquitin-conjugating enzyme E2 T OS=Mus musculus GN=Ube2t PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.273e-22
Identity = 52/147 (35.37%), Postives = 88/147 (59.86%), Query Frame = 2
Query:  122 RIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDIL----KDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 550
            R+++E+  L ++PP   +   + D + +  A I+G A TPY+ G+F L++  P  YPF+PP+V FLT IYH N+DS+G + LDIL    K +W P+L I  VL +++ +   P+  +P++  I+  +  +K    + A +WT   A+
Sbjct:    6 RLKKELHMLAIEPPPGITCWQEKDQVADLRAQILGGANTPYEKGVFTLEVIIPERYPFEPPQVRFLTPIYHPNIDSSGRICLDILKLPPKGAWRPSLNIATVLTSIQLLMAEPNPDDPLMADISSEFKYNKIAFLKKAKQWTEAHAR 152          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC2_YEAST (Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces cerevisiae GN=RAD6 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.273e-22
Identity = 49/131 (37.40%), Postives = 79/131 (60.31%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKH 511
            +R+ R+   +  D P   SA P  DN+  W A IIGPA TPY+ G F L + F  +YP KPP V FL+ ++H NV + G + LDIL++ W+P   +  +L +++S+F +P+  +P     A L+ + K+++
Sbjct:    7 RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQY 137          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.273e-22
Identity = 49/131 (37.40%), Postives = 79/131 (60.31%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKH 511
            +R+ R+   +  D P   SA P  DN+  W A IIGPA TPY+ G F L + F  +YP KPP V FL+ ++H NV + G + LDIL++ W+P   +  +L +++S+F +P+  +P     A L+ + K+++
Sbjct:    7 RRLMRDFKRMKEDSPPGVSASPLPDNVMIWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFQDHKSQY 137          
BLAST of CX676379 vs. ExPASy Swiss-Prot
Match: UBC2_ASHGO (Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossypii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.273e-22
Identity = 49/131 (37.40%), Postives = 79/131 (60.31%), Query Frame = 2
Query:  119 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKH 511
            +R+ R+   +  D P   SA P  DN+  W A IIGPA TPY+ G F L + F  +YP KPP V FL+ ++H NV + G + LDIL++ W+P   +  +L +++S+F +P+  +P     A L+ + K+++
Sbjct:    7 RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQY 137          
The following BLAST results are available for this feature:
BLAST of CX676379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
UBC2_TRIHA1.651e-2236.64Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC2_EMENI1.651e-2235.88Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]
UBC2_ASPFU1.651e-2235.88Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UBC2_SCHPO2.156e-2237.40Ubiquitin-conjugating enzyme E2 2 OS=Schizosacchar... [more]
UBC2_CANGA2.156e-2238.17Ubiquitin-conjugating enzyme E2 2 OS=Candida glabr... [more]
UBE2T_HUMAN3.677e-2235.37Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens ... [more]
UBE2T_MOUSE6.273e-2235.37Ubiquitin-conjugating enzyme E2 T OS=Mus musculus ... [more]
UBC2_YEAST6.273e-2237.40Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces... [more]
UBC2_KLULA6.273e-2237.40Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]
UBC2_ASHGO6.273e-2237.40Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossyp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_69B08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69B08-C15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676379 ID=CX676379; Name=CX676379; organism=Citrus sinensis; type=EST; length=823bp
CTTGAAAGTTAAAATGGTGCGTGTTGTTGTGGACATGAACAGCGGCGGTG
GAGGTAGCGGAGTCGGAGGAACATCGACTTCATCGTGGGTCTCGACGACG
TCGGTTTCAGCATCTGGGAAGAGGATTCAGAGAGAAATGGCGGAGCTGAA
CATGGACCCACCTCAGGATTGCTCTGCTGGTCCCAAGGGTGACAATCTTT
ACAACTGGGTCGCCACCATCATTGGCCCTGCTGGAACACCATACCAAGGG
GGTATATTTTTTCTTGACATAACATTTCCAACTGATTATCCGTTCAAACC
TCCAAAGGTGGCATTTCTAACTCGAATCTACCACTGCAACGTTGATTCTG
CTGGCAATGTTAATTTGGATATCTTGAAGGACAGTTGGAGTCCAGCTCTG
ACAATTACGAAGGTGCTACTTGCAGTCAGATCAATGTTCACAAACCCTAG
CCTTCATAATCCCATTGTTCCTGGCATTGCCCACTTGTACTTAGAAGATA
AAGCTAAACATGATCAACTAGCAGCAGAGTGGACACTGCGATTTGCCAAG
TAATGAATCCAATGAAAGAGCTGACACCGCTTAACATTTCGATGTTGTTG
TAGATTCCTTATCAGCATGTCGTTATTAGTCCAAGACTGCACCCATGCCA
CTTTCTTGAATATGCCCCTAGGCATCTATAAAATGCTCTCCAACATGAAC
TGCAATGTTATCCTTGCAACTATATCACGTTTGAAAGCAACTGTGAGAAA
TTCAGCTTATTGTAAATGTCTTGCCTCATATGGTTACATCAATATTTAGT
TGCTGTGTCGAAATAAAATCATT
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