CN188884
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RK1_ARATH (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana GN=RPL1 PE=1 SV=1) HSP 1 Score: 265.003 bits (676), Expect = 3.230e-70 Identity = 127/145 (87.59%), Postives = 139/145 (95.86%), Query Frame = -1 Query: 331 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPS 765 AD+VG DDLIEQIKGGFMEFDKLIASPDMMVKVA LGKILGPRGLMPNPKAGTVT NIPQAIEEFKKGKVE+RADKTGIVHIPFGK +F+E+DLLINFLAAVKS+E NKPKGAKGVYWKSA+ICSSMGPSI+LNI+EM+D+K P+ Sbjct: 200 ADIVGSDDLIEQIKGGFMEFDKLIASPDMMVKVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFTEEDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFKPPT 344
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RK1_SPIOL (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea GN=RPL1 PE=1 SV=1) HSP 1 Score: 243.817 bits (621), Expect = 7.705e-64 Identity = 116/146 (79.45%), Postives = 131/146 (89.73%), Query Frame = -1 Query: 328 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSN 765 AD+VGG++LIEQIKGGFM+FDKLIA+ DMM KVASLG+ILGPRGLMP PKAGTVT N+ QA+EEFKKGKVE+R DKTGIVHIPFGK +F E+DLLIN A +KS+E NKP GAKGVYWKSA+I SSMGPSIRLNI+EMLDYK PSN Sbjct: 206 ADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSN 351
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RK1_RHDSA (50S ribosomal protein L1, chloroplastic OS=Rhodomonas salina GN=rpl1 PE=3 SV=1) HSP 1 Score: 191.815 bits (486), Expect = 3.475e-48 Identity = 91/140 (65.00%), Postives = 113/140 (80.71%), Query Frame = -1 Query: 346 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765 ADL G +DLI+ I G ++FD+LIA+PDMM +A LGK+LGPRGLMP+PK+GTVT +I +AI+EFKKGK+EYRADK+GIVHI FGK DFS +DLL N A +SI+ N+P G KG YWKS YICS+MGPSI+L+I E D Sbjct: 91 ADLAGAEDLIQNIMKGDLDFDRLIATPDMMPAIAKLGKVLGPRGLMPSPKSGTVTADIKEAIDEFKKGKLEYRADKSGIVHILFGKTDFSVEDLLANLEAVQESIDKNRPSGVKGRYWKSFYICSTMGPSIQLDISEFRD 230
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RK1_GUITH (50S ribosomal protein L1, chloroplastic OS=Guillardia theta GN=rpl1 PE=3 SV=1) HSP 1 Score: 191.045 bits (484), Expect = 5.927e-48 Identity = 89/140 (63.57%), Postives = 113/140 (80.71%), Query Frame = -1 Query: 346 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765 ADL G DL++ I G ++FD+LIA+PDMM +A LGK+LGPRGLMP+PK+GTVT+++ AIEEFKKGK+EYRADK+GIVHI FGK +FS +DLL+N A +SI+ N+P G KG YWKS YICS+MGPSI+L+I E D Sbjct: 91 ADLAGSTDLVQDIMKGMLDFDRLIATPDMMPLIAKLGKVLGPRGLMPSPKSGTVTSDVKSAIEEFKKGKLEYRADKSGIVHISFGKTNFSVNDLLLNLEAVQESIDKNRPAGVKGKYWKSFYICSTMGPSIQLDISEFRD 230
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_THEEB (50S ribosomal protein L1 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplA PE=3 SV=1) HSP 1 Score: 186.808 bits (473), Expect = 1.118e-46 Identity = 86/143 (60.14%), Postives = 119/143 (83.22%), Query Frame = -1 Query: 337 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 765 AD+VG ++LI++I+ G M+FD LIA+PDMM +VA +G+ILGPRGLMP+PKAGTVT ++PQAI+EFK GKVE+RAD++GIVH+ FGKA FS +DLL+N A +SI+ N+P GAKG YW+S Y+ ++MGPSI+++I + + KL Sbjct: 91 ADVVGSEELIDEIQKGRMDFDLLIATPDMMPQVAKVGRILGPRGLMPSPKAGTVTFDLPQAIQEFKAGKVEFRADRSGIVHVLFGKASFSAEDLLVNLKALQESIDRNRPSGAKGRYWRSVYVAATMGPSIQVDINALRELKL 233
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ANASP (50S ribosomal protein L1 OS=Anabaena sp. (strain PCC 7120) GN=rplA PE=3 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 3.252e-46 Identity = 85/143 (59.44%), Postives = 117/143 (81.82%), Query Frame = -1 Query: 337 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 765 AD+VG ++LI++I+ G M+FDKLIA+PD+M +VA LGK+LGPRGLMP+PK GTVT ++ AI EFK GK+E+RAD+TGIVH+ FGKA FS +DLL+N A ++I+ N+P GAKG YW++ Y+ ++MGPSIR++I + DYKL Sbjct: 92 ADVVGSEELIDEIQKGRMDFDKLIATPDVMPQVAKLGKMLGPRGLMPSPKGGTVTFDVASAIAEFKAGKLEFRADRTGIVHVMFGKASFSPEDLLVNLKALQETIDRNRPSGAKGRYWRTFYVSATMGPSIRVDINALRDYKL 234
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ANAVT (50S ribosomal protein L1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplA PE=3 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 9.462e-46 Identity = 85/143 (59.44%), Postives = 116/143 (81.12%), Query Frame = -1 Query: 337 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 765 AD+ G ++LI++I+ G M+FDKLIA+PD+M +VA LGK+LGPRGLMP+PK GTVT +I AI EFK GK+E+RAD+TGIVH+ FGKA FS +DLL+N A ++I+ N+P GAKG YW++ Y+ ++MGPSIR++I + DYKL Sbjct: 92 ADVFGSEELIDEIQKGRMDFDKLIATPDVMPQVAKLGKMLGPRGLMPSPKGGTVTFDIASAIAEFKAGKLEFRADRTGIVHVMFGKASFSPEDLLVNLKALQETIDRNRPSGAKGRYWRTFYVSATMGPSIRVDINALRDYKL 234
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MICAN (50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) GN=rplA PE=3 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 1.236e-45 Identity = 85/143 (59.44%), Postives = 114/143 (79.72%), Query Frame = -1 Query: 337 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 765 AD+VG ++LIE+I G M+F+ LIA+PDMM KVA LG+ LGPRGLMP+PK GTVTT++ AI EFK GK+E+RAD+TGIVH+ FGKA FS +DLL+N A ++++ N+P GAKG YW++ Y+ SSMGPSI+++I + D KL Sbjct: 92 ADIVGSEELIEEIAKGMMDFEVLIATPDMMPKVAKLGRQLGPRGLMPSPKGGTVTTDLTGAIAEFKAGKLEFRADRTGIVHVQFGKASFSAEDLLVNLKALQETVDRNRPSGAKGRYWRTVYVSSSMGPSIQVDISALRDLKL 234
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SYNR3 (50S ribosomal protein L1 OS=Synechococcus sp. (strain RCC307) GN=rplA PE=3 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 1.614e-45 Identity = 84/140 (60.00%), Postives = 110/140 (78.57%), Query Frame = -1 Query: 346 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765 A+LVG ++L++ I GG M+FD LIA+PDMM KVA LG++LGPRGLMPNPK GTVTT++ AI EFK GK+E+RAD++GIVH+ FGKA FS DDLL N + ++++ NKP GAKG YWKS YI S+MGPS+ ++ + D Sbjct: 91 AELVGDEELVDSIAGGQMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKTGTVTTDVTNAINEFKAGKLEFRADRSGIVHVQFGKASFSADDLLENLKSVQETVDRNKPSGAKGRYWKSLYITSTMGPSVEVDFSALQD 230
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_PROMS (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain AS9601) GN=rplA PE=3 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 2.108e-45 Identity = 87/142 (61.27%), Postives = 110/142 (77.46%), Query Frame = -1 Query: 340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765 ADL G +DL+E I G MEFD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVT +I AI+EFK GK+E+RADK GIVH+ FGKA F+++ L N +SI+ NKP GAKG YWK+ Y+ S+MGPS++L+I + DY+ Sbjct: 91 ADLFGEEDLVESINKGNMEFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTNDIANAIKEFKAGKLEFRADKAGIVHVRFGKASFTKEALFDNLKTLQESIDKNKPSGAKGKYWKTFYVTSTMGPSVQLDINAVQDYQ 232 The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bpback to top |