CN188821
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SMAL1_CAEEL (Putative SMARCAL1-like protein OS=Caenorhabditis elegans GN=C16A3.1 PE=2 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.298e-31 Identity = 73/170 (42.94%), Postives = 105/170 (61.76%), Query Frame = -1 Query: 248 QPMLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVSSSQIRSSPAKQKTLDSFLKRCNNVDDSEHQQKLKYRK 757 Q +LD I K+K+ IRIDG TP R AL FQ D+++ AVLS+ A GVG+TLTAAS V+FAE+ + PG L+QAEDRAHR+GQ SV V YL+A T DD++W++V+ KL+ LGQV + +R + A Q + +LK+ + E + ++ ++ Sbjct: 503 QIVLDTIQVEVNKRKLGSIRIDGKTPSHRRTALCDSFQTDDNIRVAVLSITAAGVGITLTAASVVVFAEIHFNPGYLVQAEDRAHRVGQKDSVFVQYLIAKKTADDVMWNMVQQKLDVLGQVSLSSDTFRTADKMHLRFNDAAQPGIAEYLKKTPDTTIDEWEDPVEEKE 672
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: ZRAB3_MOUSE (Zinc finger Ran-binding domain-containing protein 3 OS=Mus musculus GN=Zranb3 PE=1 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.215e-29 Identity = 63/131 (48.09%), Postives = 88/131 (67.18%), Query Frame = -1 Query: 359 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVS 751 ML A + ++ K IRIDG P + R LV +FQ+ D + A+LS++A G GLT TAAS V+FAEL W PG + QAEDRAHRIGQ SSVN++YL+AN T+D ++W ++ K + G L+G + L+ + Sbjct: 350 MLQACTEAVIESKSRYIRIDGSVPSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDSLMWAMLNRKAQVTGSTLNGRKEKLQAT 480
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: ZRAB3_HUMAN (Zinc finger Ran-binding domain-containing protein 3 OS=Homo sapiens GN=ZRANB3 PE=2 SV=2) HSP 1 Score: 126.716 bits (317), Expect = 1.343e-28 Identity = 61/129 (47.29%), Postives = 86/129 (66.67%), Query Frame = -1 Query: 365 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLE 751 ML A + ++ K IRIDG + R LV +FQ+ D + A+LS++A G GLT TAAS V+FAEL W PG + QAEDRAHRIGQ SSVN++YL+AN T+D ++W ++ K + G L+G + ++ Sbjct: 350 MLQACTEAVIENKTRYIRIDGSVSSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKIQ 478
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SMAL1_XENTR (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Xenopus tropicalis GN=smarcal1 PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 2.292e-28 Identity = 72/160 (45.00%), Postives = 98/160 (61.25%), Query Frame = -1 Query: 275 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVS-SSQIRSSPAKQKTLDSFLKRCNNVDDSE 751 +LD I + KK V IRIDG T A RQ+L +FQ + AVLS+ A +GLTL++A V+FAEL W PG LIQAEDR HRIGQ SSVN++YL+A T DD +W +++ K++ LGQ N E + S+ KQKT+ +R + + +E Sbjct: 740 VLDHICEELGKKDVPYIRIDGNTSSADRQSLCHKFQMSEKSCVAVLSITAANMGLTLSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVNIHYLVAKGTADDYLWPMIQEKIKVLGQAGLSEANFSETTESTDYFYKDPKQKTIYDLFQRSFSEEGAE 899
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SMAL1_XENLA (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Xenopus laevis GN=smarcal1 PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 2.292e-28 Identity = 72/161 (44.72%), Postives = 99/161 (61.49%), Query Frame = -1 Query: 272 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVS-SSQIRSSPAKQKTLDSFLKRCNNVDDSEH 751 +LD I + KK+V IRIDG T A RQ+L +FQ + AVLS+ A +GLTL++A V+FAEL W PG LIQAEDR HRIGQ SSVN++YL+A T DD +W +++ K++ LGQ N E + S+ KQKT+ +R + +E+ Sbjct: 758 VLDNICEELGKKEVPYIRIDGNTSSADRQSLCHKFQFSEKSCVAVLSITAANMGLTLSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVNIHYLVAKGTADDYLWPMIQEKIKVLGQAGLSEANFSETTESTDYFYKDPKQKTIYDLFQRSFSEQGAEN 918
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SMAL1_DANRE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Danio rerio GN=smarcal1 PE=2 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.909e-28 Identity = 69/158 (43.67%), Postives = 95/158 (60.13%), Query Frame = -1 Query: 281 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQV-LDGHENSLEVSSSQIRSSPAKQKTLDSFLKRCNNVDD 751 +LD+I K +K + IRIDG TP A RQ L FQ AVLS+ A +GLTL +A+ V+FAEL W PG LIQAEDR HRIGQ S+V+++YL+A T DD +W ++++K+ L QV L S S+ S +Q T+ +R + D+ Sbjct: 641 VLDSITKELGEKSISFIRIDGSTPSAERQLLCERFQASQQSCVAVLSITAANMGLTLHSAALVVFAELFWNPGVLIQAEDRVHRIGQTSNVDIHYLVAKGTADDYLWPMIQAKMNVLEQVGLSESNISENAESASFHSRDRQQLTITEMFQRSFDEDE 798
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SMAL1_RAT (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Rattus norvegicus GN=Smarcal1 PE=2 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 8.708e-28 Identity = 68/160 (42.50%), Postives = 97/160 (60.62%), Query Frame = -1 Query: 275 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEVS-SSQIRSSPAKQKTLDSFLKRCNNVDDSE 751 +LDAI K +K V IRIDG TP A R+ L +FQ AVLS+ A +GLT ++A V+FAEL W PG LIQAEDR HRIGQ +SV ++YL+A T DD +W +++ K++ LG+ N E++ ++ KQKT+ S ++ D ++ Sbjct: 693 LLDAIAKELERKNVQHIRIDGSTPSADREDLCQQFQLSKGHTVAVLSITAANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQTNSVGIHYLVAKGTADDYLWPLIQEKIKVLGEAGLSETNFSEMTEATDYLYKDPKQKTIYSLFQQSFEDDGND 852
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SMAL1_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Homo sapiens GN=SMARCAL1 PE=1 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 4.322e-27 Identity = 67/152 (44.08%), Postives = 92/152 (60.53%), Query Frame = -1 Query: 302 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEV--SSSQIRSSPAKQKTLDSFLK 751 +LDAI + +K V IRIDG T A R+ L +FQ + AVLS+ A +GLT ++A V+FAEL W PG LIQAEDR HRIGQ SSV ++YL+A T DD +W +++ K++ L + N E+ S+ + P +QK D F K Sbjct: 737 VLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKVLAEAGLSETNFSEMTESTDYLYKDPKQQKIYDLFQK 888
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SMAL1_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Mus musculus GN=Smarcal1 PE=2 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 9.628e-27 Identity = 65/147 (44.22%), Postives = 91/147 (61.90%), Query Frame = -1 Query: 317 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQVLDGHENSLEV--SSSQIRSSPAKQKTL 751 +LDA+ K +K V IRIDG TP A R+A FQ A+LS+ A +GLT + A V+FAEL W PG LIQAEDR HRIGQ +SV+++YL+A T DD +W +++ K++ LG+ N E+ ++ + P KQKT+ Sbjct: 695 ILDAVAKELERKNVQHIRIDGSTPSADREAQCQRFQLSKGHTVALLSITAANMGLTFSTADLVVFAELFWNPGVLIQAEDRVHRIGQTNSVSIHYLVAKGTADDYLWPLIQEKIKVLGEAGLSETNFSEMTEATDYVHKDP-KQKTI 840
BLAST of CN188821 vs. ExPASy Swiss-Prot
Match: SMAL1_DROME (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Drosophila melanogaster GN=Marcal1 PE=1 SV=2) HSP 1 Score: 115.931 bits (289), Expect = 2.371e-25 Identity = 60/120 (50.00%), Postives = 77/120 (64.17%), Query Frame = -1 Query: 392 MLDAIHKLFLKKKVHCIRIDGGTPPASRQALVTEFQEKDDVKAAVLSMKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNVYYLLANDTVDDIVWDVVRSKLENLGQV 751 M+DAI KVH IRIDG T R V FQ+K K A+LS+KA G+TLTAA ++FAEL W P L QAE RAHRIGQ V YL+A++T DDI+W+++++K E L +V Sbjct: 547 MMDAISDFLSGLKVHYIRIDGQTRSDHRSDSVDTFQKKSSCKVALLSLKACNSGITLTAAEIIVFAELDWNPSTLAQAESRAHRIGQTKPVICRYLIAHNTADDIIWNMLKNKQEVLSKV 666 The following BLAST results are available for this feature:
BLAST of CN188821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 138
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188821 ID=CN188821; Name=CN188821; organism=Citrus sinensis; type=EST; length=757bpback to top |