CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_GOSBA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Gossypium barbadense GN=ndhA PE=3 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 5.469e-83
Identity = 158/184 (85.87%), Postives = 170/184 (92.39%), Query Frame = 3
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII T EV+DINSF  LESL+EVYGI+W+L PI   VL ITIGVLVIVWLEREISAGIQQRIGPEYA PLG+LQALADGTKLLFKEN+LPSRGN+ LFSIGP+IAVI+ILLS+ VIPFS  L+LADLNIGIFLWIAISSIAP+GLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIYTTEVEDINSFYTLESLKEVYGIIWMLVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGLLQALADGTKLLFKENILPSRGNTRLFSIGPAIAVISILLSFSVIPFSSRLILADLNIGIFLWIAISSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_DAUCA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Daucus carota GN=ndhA PE=3 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 9.329e-83
Identity = 159/184 (86.41%), Postives = 169/184 (91.85%), Query Frame = 3
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII T EVQ INSF RLESL+EVY I+W+L PI   VL ITIGVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKENLLPSRG++ LFSIGPSIAV +ILLSYLVIPF Y LVLAD++IG+FLWIAISSIAP+GLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIDTTEVQAINSFFRLESLKEVYDIIWMLVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSRGDTRLFSIGPSIAVTSILLSYLVIPFGYRLVLADVSIGVFLWIAISSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_POPTR (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Populus trichocarpa GN=ndhA PE=3 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 7.897e-82
Identity = 156/184 (84.78%), Postives = 166/184 (90.22%), Query Frame = 3
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII T  VQ INSFSRL+SL EVYGI+W+L PI   VL ITIG+LVIVWLEREISAGIQQRIGPEYA P G+LQALADGTKLLFKENL PSRG++ LFSIGPSIAVI+ LLSY VIPF Y+ VLADLNIG+FLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIDTTTVQAINSFSRLKSLNEVYGIIWMLVPILTLVLGITIGILVIVWLEREISAGIQQRIGPEYAGPFGVLQALADGTKLLFKENLFPSRGDTRLFSIGPSIAVISTLLSYSVIPFGYHFVLADLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_POPAL (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Populus alba GN=ndhA PE=3 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 7.897e-82
Identity = 156/184 (84.78%), Postives = 166/184 (90.22%), Query Frame = 3
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII T  VQ INSFSRL+SL EVYGI+W+L PI   VL ITIG+LVIVWLEREISAGIQQRIGPEYA P G+LQALADGTKLLFKENL PSRG++ LFSIGPSIAVI+ LLSY VIPF Y+ VLADLNIG+FLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIDTTTVQAINSFSRLKSLNEVYGIIWMLVPILTLVLGITIGILVIVWLEREISAGIQQRIGPEYAGPFGVLQALADGTKLLFKENLFPSRGDTRLFSIGPSIAVISTLLSYSVIPFGYHFVLADLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_TOBAC (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nicotiana tabacum GN=ndhA PE=3 SV=3)

HSP 1 Score: 302.753 bits (774), Expect = 1.759e-81
Identity = 156/188 (82.98%), Postives = 170/188 (90.43%), Query Frame = 3
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRVIR 635
            MII T E++ INSFS+LESL+EVYGI+W+L PI   VL ITIGVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLL KENL+PS G++ LFSIGPSIAVI+I LSY VIPF  +LVLADL+IG+F WIAISSIAP+GLLMSGYGSNNKYSFLGGLRAAAQSISYEIPL LCVLSISLRVIR
Sbjct:    1 MIIDTTEIETINSFSKLESLKEVYGIIWMLFPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLLKENLIPSTGDTRLFSIGPSIAVISIFLSYSVIPFGDHLVLADLSIGVFFWIAISSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISLRVIR 188          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_LEPVR (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Lepidium virginicum GN=ndhA PE=3 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 5.119e-81
Identity = 158/184 (85.87%), Postives = 165/184 (89.67%), Query Frame = 3
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII    VQ INSF RLESL+EVYG++W+  PI   VL I  GVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKENL PSRGN+ LFSIGPSIAVI+ILLSY VIPFS +LVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIYATAVQTINSFVRLESLKEVYGLIWIFVPIFSLVLGIITGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLRPSRGNTPLFSIGPSIAVISILLSYSVIPFSNHLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_PLAOC (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Platanus occidentalis GN=ndhA PE=3 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 6.686e-81
Identity = 156/184 (84.78%), Postives = 167/184 (90.76%), Query Frame = 3
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII T EVQ INSFSR ESL+E YG++W+L PI   V  ITIGVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKE+LLPSRG++ LFSIGPSIA+I+ILLSY VIPF Y LVLADL+IG+FLWIAISSIAPIGLLMSGYGSNNKYSF GGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIDTTEVQAINSFSRSESLKEAYGLIWLLVPIFTPVSGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDTRLFSIGPSIAIISILLSYSVIPFGYRLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFSGGLRAAAQSISYEIPLTLCVLSISL 184          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_OLIPU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Olimarabidopsis pumila GN=ndhA PE=3 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 6.686e-81
Identity = 158/184 (85.87%), Postives = 165/184 (89.67%), Query Frame = 3
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII    VQ INSF RLESL+EVYG++W+  PI   VL I  GVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKENL PSRGN+ LFSIGPSIAVI+ILLSY VIPFS +LVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIYATVVQTINSFVRLESLKEVYGLIWIFVPIFSLVLGIITGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLRPSRGNTPLFSIGPSIAVISILLSYSVIPFSNHLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_OENEH (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Oenothera elata subsp. hookeri GN=ndhA PE=3 SV=2)

HSP 1 Score: 300.827 bits (769), Expect = 6.686e-81
Identity = 154/184 (83.70%), Postives = 170/184 (92.39%), Query Frame = 3
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII T  VQD+NSFSRL+SL+EV GI+W+L PI   VL IT+GVLVIVWLEREISAGIQQRIGPEYA P+GILQALADG KL+FKENLLPSRG++ LFSIGPSIAVI+ILLSY VIPFS +LVL+DLNIG+FLWIA+SSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLC+LSISL
Sbjct:    1 MIIDTTAVQDMNSFSRLQSLKEVSGIIWMLVPILSLVLGITLGVLVIVWLEREISAGIQQRIGPEYAGPMGILQALADGIKLIFKENLLPSRGDTRLFSIGPSIAVISILLSYSVIPFSSHLVLSDLNIGVFLWIAVSSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCLLSISL 184          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_LIRTU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Liriodendron tulipifera GN=ndhA PE=3 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 6.686e-81
Identity = 158/184 (85.87%), Postives = 167/184 (90.76%), Query Frame = 3
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII T EVQ INSFSR ESL+EVYG++W+L PI   VL ITIGVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKE+LLPSRG+  LFSIGPSIAVI+ILLSY VIPF Y LVLADL+IG+FLWIAISSIAPIGLLMSGYGSNNKYSF GGLRAAAQSISYEIPLT CVLSISL
Sbjct:    1 MIIDTTEVQAINSFSRSESLKEVYGLVWLLVPIFTPVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISILLSYSVIPFGYRLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFSGGLRAAAQSISYEIPLTPCVLSISL 184          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1C_GOSBA5.469e-8385.87NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_DAUCA9.329e-8386.41NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_POPTR7.897e-8284.78NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_POPAL7.897e-8284.78NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_TOBAC1.759e-8182.98NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_LEPVR5.119e-8185.87NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_PLAOC6.686e-8184.78NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_OLIPU6.686e-8185.87NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_OENEH6.686e-8183.70NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_LIRTU6.686e-8185.87NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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