CK939407
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_CITSI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Citrus sinensis GN=ndhA PE=3 SV=1) HSP 1 Score: 349.362 bits (895), Expect = 1.639e-95 Identity = 183/184 (99.46%), Postives = 183/184 (99.46%), Query Frame = 3 Query: 72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSY VIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL Sbjct: 1 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_PELHO (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Pelargonium hortorum GN=ndhA PE=3 SV=1) HSP 1 Score: 316.62 bits (810), Expect = 1.177e-85 Identity = 162/184 (88.04%), Postives = 171/184 (92.93%), Query Frame = 3 Query: 72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 MII TPEVQDINSFSR ESLQE+YGI+W+L PI V+ ITIGVLVIVWLEREISAGIQQRIGPEYA P GILQALADGTKLL KENLLPSRG+S LFSIGPS+AVI+ILLSY VIPFSY LVLADLN+G+FLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL Sbjct: 1 MIIDTPEVQDINSFSRFESLQEIYGIVWMLVPILTLVVGITIGVLVIVWLEREISAGIQQRIGPEYAGPFGILQALADGTKLLLKENLLPSRGDSPLFSIGPSMAVISILLSYSVIPFSYRLVLADLNVGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_VITVI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Vitis vinifera GN=ndhA PE=3 SV=1) HSP 1 Score: 316.235 bits (809), Expect = 1.538e-85 Identity = 163/184 (88.59%), Postives = 172/184 (93.48%), Query Frame = 3 Query: 72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 MII TPEVQDINSFSRLE L+EVYGI+W+L PI VL ITIGVL IVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKENLLPSRG++ LFSIGPSIAVI+ILLSYL+IPF NLVL+DLNIG+FLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL Sbjct: 1 MIIDTPEVQDINSFSRLEYLKEVYGIIWMLVPIFTPVLGITIGVLAIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSRGDTRLFSIGPSIAVISILLSYLIIPFGSNLVLSDLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_HELAN (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Helianthus annuus GN=ndhA PE=3 SV=1) HSP 1 Score: 315.079 bits (806), Expect = 3.426e-85 Identity = 164/184 (89.13%), Postives = 172/184 (93.48%), Query Frame = 3 Query: 72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 MII T EVQ INSFSRLESL+EVYGI+WVL PI VL ITIGVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKENLLPSRG++ LFSIGPSIAVI+ILLSYLVIPF Y LVLADL+IG+FLWIAISSIAP+GLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL Sbjct: 1 MIIDTTEVQAINSFSRLESLKEVYGIIWVLIPIFTPVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSRGDTRLFSIGPSIAVISILLSYLVIPFGYRLVLADLSIGVFLWIAISSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_LACSA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Lactuca sativa GN=ndhA PE=3 SV=1) HSP 1 Score: 313.538 bits (802), Expect = 9.967e-85 Identity = 163/184 (88.59%), Postives = 173/184 (94.02%), Query Frame = 3 Query: 72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 MII T EVQ INSFS LESL+EVYGI+W+L PI VL ITIGVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKENLLPSRG++ LFSIGPSIAVI+ILLSYLVIPFSY+LVLADL+IG+FLWIAISSIAP+GLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL Sbjct: 1 MIIDTTEVQAINSFSILESLKEVYGIIWMLIPIFTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSRGDTRLFSIGPSIAVISILLSYLVIPFSYHLVLADLSIGVFLWIAISSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_LOTJA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Lotus japonicus GN=ndhA PE=3 SV=1) HSP 1 Score: 313.153 bits (801), Expect = 1.302e-84 Identity = 159/184 (86.41%), Postives = 171/184 (92.93%), Query Frame = 3 Query: 72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 MII T EVQDINSFSRLES +EVYG+LWVLAPI I VL ITI VL IVWLEREISAG+QQRIGPEYA P G+LQALADGTKLLFKENL+PSRG+ LFSIGPSI+VI+IL++YLVIPFSYN VL+DLNIG+FLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL Sbjct: 1 MIIDTTEVQDINSFSRLESFKEVYGVLWVLAPILIIVLGITISVLAIVWLEREISAGMQQRIGPEYAGPFGVLQALADGTKLLFKENLIPSRGDIRLFSIGPSISVISILITYLVIPFSYNFVLSDLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_PANGI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Panax ginseng GN=ndhA PE=3 SV=1) HSP 1 Score: 309.686 bits (792), Expect = 1.439e-83 Identity = 160/184 (86.96%), Postives = 171/184 (92.93%), Query Frame = 3 Query: 72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 MII T EVQ INSF RLESL+EVYGI+W+L PI VL ITIGVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKENLLPSRG++ LFSIGPS+AV +ILLSYLVIPF Y+LVLADL+IG+FLWIAISSIAP+GLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL Sbjct: 1 MIIDTTEVQAINSFFRLESLKEVYGIIWMLIPIFTPVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSRGDTRLFSIGPSVAVTSILLSYLVIPFGYHLVLADLSIGVFLWIAISSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_GOSHI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Gossypium hirsutum GN=ndhA PE=3 SV=1) HSP 1 Score: 308.531 bits (789), Expect = 3.206e-83 Identity = 159/184 (86.41%), Postives = 170/184 (92.39%), Query Frame = 3 Query: 72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 MII T EV+DINSF LESL+EVYGI+W+L PI VL ITIGVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKEN+LPSRGN+ LFSIGP+IAVI+ILLS+ VIPFS L+LADLNIGIFLWIAISSIAP+GLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL Sbjct: 1 MIIYTTEVEDINSFYTLESLKEVYGIIWMLVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENILPSRGNTRLFSIGPAIAVISILLSFSVIPFSSRLILADLNIGIFLWIAISSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_CUCSA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus GN=ndhA PE=3 SV=1) HSP 1 Score: 308.531 bits (789), Expect = 3.206e-83 Identity = 160/184 (86.96%), Postives = 169/184 (91.85%), Query Frame = 3 Query: 72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 MII T +VQDI+SFSRLE L+E YGILWVL PI VL ITIGVLVIVWLEREISAGIQQRIGPEYA PLG+LQALADGTKLLFKENLLPSRG++ LFSIGPSIAVI+ILLSY VIPF Y LVLADL IG+FLWIAISS+APIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL Sbjct: 1 MIIDTSQVQDIHSFSRLEFLKEFYGILWVLVPILTTVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSRGDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_COFAR (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Coffea arabica GN=ndhA PE=3 SV=1) HSP 1 Score: 308.531 bits (789), Expect = 3.206e-83 Identity = 160/184 (86.96%), Postives = 169/184 (91.85%), Query Frame = 3 Query: 72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 MII T E+Q INSF +LESL+EVYGI+W+L PI VL ITIGVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKENLLPSRG++ LFSIGPSIAVI+ILLSY VIPF Y LVLADL IG+FLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL Sbjct: 1 MIIDTTELQAINSFFKLESLKEVYGIIWILIPIFTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSRGDARLFSIGPSIAVISILLSYSVIPFGYRLVLADLTIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184 The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bpback to top |