CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_PROM2 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain MIT 9215) GN=ndhA PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.314e-52
Identity = 98/163 (60.12%), Postives = 131/163 (80.37%), Query Frame = 3
Query:  135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            E+  I+W+  P+ + ++A  +GVLV VWLER+ISA  QQRIGPEYA  LG+LQ +ADG KLL KE+++P++ +  LF+ GP + ++ ++LS+L++PF  NL+++++ IGIFLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I L
Sbjct:   23 EIAHIIWLPLPMLLVLVAAVVGVLVTVWLERKISAAAQQRIGPEYAGALGVLQPIADGLKLLVKEDIIPAKADGILFTAGPILVLVPVILSWLIVPFGQNLLISNVGIGIFLWIALSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALSVLAIVL 185          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_PROM0 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain MIT 9301) GN=ndhA PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.314e-52
Identity = 98/163 (60.12%), Postives = 131/163 (80.37%), Query Frame = 3
Query:  135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            E+  I+W+  P+ + ++A  +GVLV VWLER+ISA  QQRIGPEYA  LG+LQ +ADG KLL KE+++P++ +  LF+ GP + ++ ++LS+L++PF  NL+++++ IGIFLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I L
Sbjct:   23 EIAHIIWLPLPMLLVLVAAVVGVLVTVWLERKISAAAQQRIGPEYAGALGVLQPIADGLKLLVKEDIIPAKADGILFTAGPILVLVPVILSWLIVPFGQNLLISNVGIGIFLWIALSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALSVLAIVL 185          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_PROMP (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=ndhA PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.716e-52
Identity = 98/163 (60.12%), Postives = 132/163 (80.98%), Query Frame = 3
Query:  135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            E+  I+W+  P+ + +++  +GVLV VWLER+ISA  QQRIGPEYA  LG+LQ +ADG KLL KE+++P++ +S LF+ GP + ++ ++LS+L++PF  NL+++++ IGIFLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I L
Sbjct:   23 ELAHIIWLPLPMLLVLVSAVVGVLVTVWLERKISAAAQQRIGPEYAGALGVLQPIADGLKLLVKEDIIPAKADSILFTAGPILVLVPVILSWLIVPFGQNLLISNVGIGIFLWIALSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALSVLAIVL 185          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_PROMA (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus GN=ndhA PE=3 SV=2)

HSP 1 Score: 206.453 bits (524), Expect = 1.716e-52
Identity = 100/157 (63.69%), Postives = 128/157 (81.53%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +LW+  P+ + + A  IGVLV VWLER+ISA  QQRIGPEYA  LGILQ +ADG KLL KE+++P + ++ LF++GP + +I ++LS+L+IPF  NL+++++ IGIFLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I
Sbjct:   27 LLWLPLPMLLVLTAALIGVLVTVWLERKISAAAQQRIGPEYAGALGILQPMADGLKLLVKEDIIPDKADNLLFTLGPVLVLIPVILSWLIIPFGQNLLISNVGIGIFLWIALSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAI 183          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_ACAM1 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Acaryochloris marina (strain MBIC 11017) GN=ndhA PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.823e-52
Identity = 96/156 (61.54%), Postives = 124/156 (79.49%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +W+  P+ + ++  T+GVLV VWLER+ISA  QQRIGPEY  PLGIL  +ADG KL+FKE+++P+  +  LF++GP + VI +  SYL++PF  N+++ DL IGIF WIA+SSIAPIGLLM+GY SNNKYS LGGLRAAAQSISYEIPL L VL++
Sbjct:   28 IWLPIPMLLMIIGATVGVLVSVWLERKISAAAQQRIGPEYIGPLGILAPVADGIKLVFKEDIVPANTDPWLFTLGPILVVIPVFFSYLIVPFGQNILITDLGIGIFFWIALSSIAPIGLLMAGYSSNNKYSLLGGLRAAAQSISYEIPLALAVLAV 183          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_PROMM (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain MIT 9313) GN=ndhA PE=3 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 6.521e-52
Identity = 95/161 (59.01%), Postives = 130/161 (80.75%), Query Frame = 3
Query:  135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +V  ++W+  P+ + + A  +GVLV VWLER+ISA +QQRIGPEYA  LG+LQ +ADG KLL KE+++P R +  LF++GP + ++ ++LS+L++PF  NL+++++ IGIFLWI++SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL++
Sbjct:   23 QVAHLIWLPLPMLLVLTAAMVGVLVTVWLERKISAAVQQRIGPEYAGALGVLQPMADGLKLLVKEDVIPVRADGLLFTLGPVLVLVPVILSWLIVPFGQNLLISNVGIGIFLWISLSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAV 183          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_PROM3 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain MIT 9303) GN=ndhA PE=3 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 1.112e-51
Identity = 94/157 (59.87%), Postives = 128/157 (81.53%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            ++W+  P+ + + A  +GVLV VWLER+ISA +QQRIGPEYA  LG+LQ +ADG KLL KE+++P R +  LF++GP + ++ ++LS+L++PF  NL+++++ IGIFLWI++SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL++
Sbjct:   27 LIWLPLPMLLVLTAAMVGVLVTVWLERKISAAVQQRIGPEYAGALGVLQPMADGLKLLVKEDVIPVRADGLLFTLGPVLVLVPVILSWLIVPFGQNLLISNVGIGIFLWISLSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAV 183          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_ANAVT (NAD(P)H-quinone oxidoreductase subunit 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ndhA PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 3.236e-51
Identity = 94/156 (60.26%), Postives = 125/156 (80.13%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +W+  P+ + ++  T+GVLV VWLER+ISA  QQRIGPEY  PLG+L  +ADG KL+FKE+++P++ +  LF++GP + V+ + LSYL++PF  N+V+ ++  GIFLWIA+SSI PIGLLM+GY SNNKYS LGGLRAAAQSISYEIPL L VL+I
Sbjct:   28 IWMPLPMILMLIGATVGVLVCVWLERKISAAAQQRIGPEYIGPLGLLAPVADGLKLVFKEDIVPAQADPWLFTLGPILVVLPVFLSYLIVPFGQNIVITNIGTGIFLWIALSSIQPIGLLMAGYSSNNKYSLLGGLRAAAQSISYEIPLALSVLAI 183          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_ANASP (NAD(P)H-quinone oxidoreductase subunit 1 OS=Anabaena sp. (strain PCC 7120) GN=ndhA PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 4.227e-51
Identity = 94/156 (60.26%), Postives = 125/156 (80.13%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +W+  P+ + ++  T+GVLV VWLER+ISA  QQRIGPEY  PLG+L  +ADG KL+FKE+++P++ +  LF++GP + V+ + LSYL++PF  N+V+ ++  GIFLWIA+SSI PIGLLM+GY SNNKYS LGGLRAAAQSISYEIPL L VL+I
Sbjct:   28 IWMPLPMILMLIGATVGVLVCVWLERKISAAAQQRIGPEYIGPLGLLAPVADGLKLVFKEDIVPAQADPWLFTLGPILVVLPVFLSYLIVPFGQNIVITNVGTGIFLWIALSSIQPIGLLMAGYSSNNKYSLLGGLRAAAQSISYEIPLALSVLAI 183          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_NOSP7 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ndhA PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 7.210e-51
Identity = 92/158 (58.23%), Postives = 127/158 (80.38%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +W+  P+ + ++  T+GVLV  WLER+ISA  QQRIGPEY  P G+L  +ADG KL+FKE+++P++ +  LF++GP I VI + LS+L++PF  N+V++++ +G+FLWIA+SSI PIGLLM+GY SNNKYS LGGLRAAAQSISYEIPL L VL+I++
Sbjct:   28 IWMPLPMILMLIGATVGVLVATWLERKISASAQQRIGPEYQGPFGLLVPVADGLKLVFKEDIVPAKSDPWLFTLGPIIVVIPVFLSFLIVPFGQNIVISNVGMGVFLWIALSSIQPIGLLMAGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAIAM 185          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1C_PROM21.314e-5260.12NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochl... [more]
NU1C_PROM01.314e-5260.12NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochl... [more]
NU1C_PROMP1.716e-5260.12NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochl... [more]
NU1C_PROMA1.716e-5263.69NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochl... [more]
NU1C_ACAM13.823e-5261.54NAD(P)H-quinone oxidoreductase subunit 1 OS=Acaryo... [more]
NU1C_PROMM6.521e-5259.01NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochl... [more]
NU1C_PROM31.112e-5159.87NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochl... [more]
NU1C_ANAVT3.236e-5160.26NAD(P)H-quinone oxidoreductase subunit 1 OS=Anabae... [more]
NU1C_ANASP4.227e-5160.26NAD(P)H-quinone oxidoreductase subunit 1 OS=Anabae... [more]
NU1C_NOSP77.210e-5158.23NAD(P)H-quinone oxidoreductase subunit 1 OS=Nostoc... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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