CK939407
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_PROM2 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain MIT 9215) GN=ndhA PE=3 SV=1) HSP 1 Score: 206.838 bits (525), Expect = 1.314e-52 Identity = 98/163 (60.12%), Postives = 131/163 (80.37%), Query Frame = 3 Query: 135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 E+ I+W+ P+ + ++A +GVLV VWLER+ISA QQRIGPEYA LG+LQ +ADG KLL KE+++P++ + LF+ GP + ++ ++LS+L++PF NL+++++ IGIFLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I L Sbjct: 23 EIAHIIWLPLPMLLVLVAAVVGVLVTVWLERKISAAAQQRIGPEYAGALGVLQPIADGLKLLVKEDIIPAKADGILFTAGPILVLVPVILSWLIVPFGQNLLISNVGIGIFLWIALSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALSVLAIVL 185
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_PROM0 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain MIT 9301) GN=ndhA PE=3 SV=1) HSP 1 Score: 206.838 bits (525), Expect = 1.314e-52 Identity = 98/163 (60.12%), Postives = 131/163 (80.37%), Query Frame = 3 Query: 135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 E+ I+W+ P+ + ++A +GVLV VWLER+ISA QQRIGPEYA LG+LQ +ADG KLL KE+++P++ + LF+ GP + ++ ++LS+L++PF NL+++++ IGIFLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I L Sbjct: 23 EIAHIIWLPLPMLLVLVAAVVGVLVTVWLERKISAAAQQRIGPEYAGALGVLQPIADGLKLLVKEDIIPAKADGILFTAGPILVLVPVILSWLIVPFGQNLLISNVGIGIFLWIALSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALSVLAIVL 185
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_PROMP (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=ndhA PE=3 SV=1) HSP 1 Score: 206.453 bits (524), Expect = 1.716e-52 Identity = 98/163 (60.12%), Postives = 132/163 (80.98%), Query Frame = 3 Query: 135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 E+ I+W+ P+ + +++ +GVLV VWLER+ISA QQRIGPEYA LG+LQ +ADG KLL KE+++P++ +S LF+ GP + ++ ++LS+L++PF NL+++++ IGIFLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I L Sbjct: 23 ELAHIIWLPLPMLLVLVSAVVGVLVTVWLERKISAAAQQRIGPEYAGALGVLQPIADGLKLLVKEDIIPAKADSILFTAGPILVLVPVILSWLIVPFGQNLLISNVGIGIFLWIALSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALSVLAIVL 185
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_PROMA (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus GN=ndhA PE=3 SV=2) HSP 1 Score: 206.453 bits (524), Expect = 1.716e-52 Identity = 100/157 (63.69%), Postives = 128/157 (81.53%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 +LW+ P+ + + A IGVLV VWLER+ISA QQRIGPEYA LGILQ +ADG KLL KE+++P + ++ LF++GP + +I ++LS+L+IPF NL+++++ IGIFLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I Sbjct: 27 LLWLPLPMLLVLTAALIGVLVTVWLERKISAAAQQRIGPEYAGALGILQPMADGLKLLVKEDIIPDKADNLLFTLGPVLVLIPVILSWLIIPFGQNLLISNVGIGIFLWIALSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAI 183
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_ACAM1 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Acaryochloris marina (strain MBIC 11017) GN=ndhA PE=3 SV=1) HSP 1 Score: 205.297 bits (521), Expect = 3.823e-52 Identity = 96/156 (61.54%), Postives = 124/156 (79.49%), Query Frame = 3 Query: 150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 +W+ P+ + ++ T+GVLV VWLER+ISA QQRIGPEY PLGIL +ADG KL+FKE+++P+ + LF++GP + VI + SYL++PF N+++ DL IGIF WIA+SSIAPIGLLM+GY SNNKYS LGGLRAAAQSISYEIPL L VL++ Sbjct: 28 IWLPIPMLLMIIGATVGVLVSVWLERKISAAAQQRIGPEYIGPLGILAPVADGIKLVFKEDIVPANTDPWLFTLGPILVVIPVFFSYLIVPFGQNILITDLGIGIFFWIALSSIAPIGLLMAGYSSNNKYSLLGGLRAAAQSISYEIPLALAVLAV 183
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_PROMM (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain MIT 9313) GN=ndhA PE=3 SV=2) HSP 1 Score: 204.527 bits (519), Expect = 6.521e-52 Identity = 95/161 (59.01%), Postives = 130/161 (80.75%), Query Frame = 3 Query: 135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 +V ++W+ P+ + + A +GVLV VWLER+ISA +QQRIGPEYA LG+LQ +ADG KLL KE+++P R + LF++GP + ++ ++LS+L++PF NL+++++ IGIFLWI++SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL++ Sbjct: 23 QVAHLIWLPLPMLLVLTAAMVGVLVTVWLERKISAAVQQRIGPEYAGALGVLQPMADGLKLLVKEDVIPVRADGLLFTLGPVLVLVPVILSWLIVPFGQNLLISNVGIGIFLWISLSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAV 183
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_PROM3 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain MIT 9303) GN=ndhA PE=3 SV=2) HSP 1 Score: 203.756 bits (517), Expect = 1.112e-51 Identity = 94/157 (59.87%), Postives = 128/157 (81.53%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 ++W+ P+ + + A +GVLV VWLER+ISA +QQRIGPEYA LG+LQ +ADG KLL KE+++P R + LF++GP + ++ ++LS+L++PF NL+++++ IGIFLWI++SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL++ Sbjct: 27 LIWLPLPMLLVLTAAMVGVLVTVWLERKISAAVQQRIGPEYAGALGVLQPMADGLKLLVKEDVIPVRADGLLFTLGPVLVLVPVILSWLIVPFGQNLLISNVGIGIFLWISLSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAV 183
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_ANAVT (NAD(P)H-quinone oxidoreductase subunit 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ndhA PE=3 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 3.236e-51 Identity = 94/156 (60.26%), Postives = 125/156 (80.13%), Query Frame = 3 Query: 150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 +W+ P+ + ++ T+GVLV VWLER+ISA QQRIGPEY PLG+L +ADG KL+FKE+++P++ + LF++GP + V+ + LSYL++PF N+V+ ++ GIFLWIA+SSI PIGLLM+GY SNNKYS LGGLRAAAQSISYEIPL L VL+I Sbjct: 28 IWMPLPMILMLIGATVGVLVCVWLERKISAAAQQRIGPEYIGPLGLLAPVADGLKLVFKEDIVPAQADPWLFTLGPILVVLPVFLSYLIVPFGQNIVITNIGTGIFLWIALSSIQPIGLLMAGYSSNNKYSLLGGLRAAAQSISYEIPLALSVLAI 183
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_ANASP (NAD(P)H-quinone oxidoreductase subunit 1 OS=Anabaena sp. (strain PCC 7120) GN=ndhA PE=3 SV=1) HSP 1 Score: 201.83 bits (512), Expect = 4.227e-51 Identity = 94/156 (60.26%), Postives = 125/156 (80.13%), Query Frame = 3 Query: 150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 +W+ P+ + ++ T+GVLV VWLER+ISA QQRIGPEY PLG+L +ADG KL+FKE+++P++ + LF++GP + V+ + LSYL++PF N+V+ ++ GIFLWIA+SSI PIGLLM+GY SNNKYS LGGLRAAAQSISYEIPL L VL+I Sbjct: 28 IWMPLPMILMLIGATVGVLVCVWLERKISAAAQQRIGPEYIGPLGLLAPVADGLKLVFKEDIVPAQADPWLFTLGPILVVLPVFLSYLIVPFGQNIVITNVGTGIFLWIALSSIQPIGLLMAGYSSNNKYSLLGGLRAAAQSISYEIPLALSVLAI 183
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_NOSP7 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ndhA PE=3 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 7.210e-51 Identity = 92/158 (58.23%), Postives = 127/158 (80.38%), Query Frame = 3 Query: 150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 +W+ P+ + ++ T+GVLV WLER+ISA QQRIGPEY P G+L +ADG KL+FKE+++P++ + LF++GP I VI + LS+L++PF N+V++++ +G+FLWIA+SSI PIGLLM+GY SNNKYS LGGLRAAAQSISYEIPL L VL+I++ Sbjct: 28 IWMPLPMILMLIGATVGVLVATWLERKISASAQQRIGPEYQGPFGLLVPVADGLKLVFKEDIVPAKSDPWLFTLGPIIVVIPVFLSFLIVPFGQNIVISNVGMGVFLWIALSSIQPIGLLMAGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAIAM 185 The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bpback to top |