CK939407
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_SYNJA (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=ndhA PE=3 SV=1) HSP 1 Score: 191.045 bits (484), Expect = 7.461e-48 Identity = 93/158 (58.86%), Postives = 121/158 (76.58%), Query Frame = 3 Query: 150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 LWV P+ + V+A T+GV+V+ WLER+ISA QQRIGP A P G+L +ADG KLL KE++LPS + LF++GP + + + L YLV+PF NL+++++ IG+F IA SS+ PIGLLMSGYGSNNKYS LGGLRAAAQSISYE+PL L VL++ L Sbjct: 29 LWVPLPMLLMVIAATLGVMVMTWLERKISAAAQQRIGPNMAGPQGVLIPIADGIKLLTKEDVLPSLADPVLFTLGPILVFLPVFLCYLVVPFGQNLLISNIAIGVFFLIATSSVQPIGLLMSGYGSNNKYSLLGGLRAAAQSISYELPLALSVLAVVL 186
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_SYNJB (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. GN=ndhA PE=3 SV=2) HSP 1 Score: 189.119 bits (479), Expect = 2.835e-47 Identity = 91/158 (57.59%), Postives = 121/158 (76.58%), Query Frame = 3 Query: 150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 LW+ P+ + ++A T+GV+V+ WLER+ISA QQRIGP A P G+L +ADG KLL KE++LP + LF++GP + + + L YLV+PF NL+++++ IG+F IAISS+ PIGLLMSGYGSNNKYS LGGLRAAAQSISYE+PL L VL++ L Sbjct: 29 LWMPLPMLLLIIAATLGVMVMTWLERKISAAAQQRIGPNMAGPQGVLIPIADGIKLLTKEDVLPILADPVLFTLGPILVFLPVFLCYLVVPFGQNLLISNIAIGVFFLIAISSVQPIGLLMSGYGSNNKYSLLGGLRAAAQSISYELPLALSVLAVVL 186
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_GLOVI (NAD(P)H-quinone oxidoreductase subunit 1 OS=Gloeobacter violaceus GN=ndhA PE=3 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 1.902e-43 Identity = 90/170 (52.94%), Postives = 120/170 (70.59%), Query Frame = 3 Query: 108 SFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 S S L +V LW+ P+ + +L +T+GV+ VW ER+ S +QQR+GP G +Q ADG KLL KE+++P + + LF++GP+I +I + SYLVIPF LVL+D+ IGIF IA++SI+PIG LM+GY SNNKY+ LGGLRAAAQSISYEIPL L VL+I Sbjct: 13 SLSGLGVPADVARALWLPLPMIVILLTVTVGVIAAVWGERKWSGMMQQRMGPTIIGLGGSIQGAADGVKLLVKEDIIPVKADPWLFTLGPAIVIIPVFFSYLVIPFGQGLVLSDITIGIFFIIAVASISPIGALMAGYASNNKYALLGGLRAAAQSISYEIPLALSVLAI 182
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_DEHSC (NADH-quinone oxidoreductase subunit H OS=Dehalococcoides sp. (strain CBDB1) GN=nuoH PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 3.043e-33 Identity = 65/157 (41.40%), Postives = 101/157 (64.33%), Query Frame = 3 Query: 153 WVLAPISIYVLA--ITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 W+ + + +L + + VL+ +WLER + Q R GP A P G+LQ +AD K+L KE+++PS + +F + P +A + ++L + IPF+ ++L DLNIGI +A+SS+ IG+ M+G+ SNNKYS LG +R AQ +SYEIPL L +L + Sbjct: 5 WIHLLVYLVILFGFVIVSVLIFIWLERRLIGRFQLRPGPNRAGPFGLLQPIADAIKVLIKEDIIPSEADKGVFWLAPLVAFVPVMLMFAAIPFADGVMLVDLNIGILYILAVSSVTVIGIFMAGWSSNNKYSLLGAMRTIAQEVSYEIPLVLSILGV 161
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_PELUB (NADH-quinone oxidoreductase subunit H OS=Pelagibacter ubique GN=nuoH PE=3 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 3.974e-33 Identity = 68/165 (41.21%), Postives = 107/165 (64.85%), Query Frame = 3 Query: 135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629 + Y IL++L P+ + V +IVWL+R I A +Q+R GP P G+LQ+LAD K +FKE ++PS N +F + P + + L+S+ VIPFS VLAD+N+G+ A+SS+ G++M G+ SN+KY FLG +R+AAQ +SYE+ + + ++++ L V Sbjct: 10 QTYKILFLLVPV-------LVSVAMIVWLDRRIWAFVQKRQGPNVVGPFGLLQSLADALKYIFKEVIIPSSSNKVIFILAPIVTMTLALVSWAVIPFSTTQVLADINVGVLYLFAVSSLGVYGIIMGGWASNSKYPFLGAIRSAAQMVSYEVSIGVIIINVLLCV 167
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_MOOTA (NADH-quinone oxidoreductase subunit H OS=Moorella thermoacetica (strain ATCC 39073) GN=nuoH PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 1.156e-32 Identity = 69/158 (43.67%), Postives = 105/158 (66.46%), Query Frame = 3 Query: 144 GILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 G+L+++ ++ I + L +++LER+ISA +QQRIGP P G+LQ++AD KLL KE+++P + +F I P + I + Y VIPF +V ADLNIG+F ++A++S I +LM G+G+NNKY+ LG +R AQ +SYEIPLT +L + Sbjct: 31 GVLYLIGVLAF----IFLNALYLIYLERKISAYMQQRIGPNRLGPHGLLQSVADAVKLLGKEDIIPRGADRWVFIIAPVLIFIPATMLYAVIPFGKGMVPADLNIGVFYFLAVASTTTIAILMGGWGANNKYALLGSMRCVAQMVSYEIPLTFSILGV 184
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_DEHE1 (NADH-quinone oxidoreductase subunit H OS=Dehalococcoides ethenogenes (strain 195) GN=nuoH PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 9.789e-32 Identity = 64/157 (40.76%), Postives = 99/157 (63.06%), Query Frame = 3 Query: 153 WVLAPISIYVLA--ITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 WV + + +L + + VL+ +WLER Q R GP A P G+LQ +AD K+L KE+++P+ + +F + P +A + ++L + IPF+ +L DLNIGI +A+SS+ IG+ M+G+ SN+KYS LG +R AQ +SYEIPL L +L + Sbjct: 5 WVHLLVYLVILFGFVIVSVLLFIWLERRFIGRFQLRPGPNRAGPFGLLQPIADAIKVLIKEDIIPTESDKGVFWLAPLVAFVPVMLMFAAIPFADGAMLVDLNIGILYILAVSSVTVIGIFMAGWSSNSKYSLLGAMRTIAQEVSYEIPLVLSILGV 161
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_OENBE (NADH-ubiquinone oxidoreductase chain 1 OS=Oenothera bertiana GN=ND1 PE=2 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 2.181e-31 Identity = 66/162 (40.74%), Postives = 107/162 (66.05%), Query Frame = 3 Query: 150 LWVLAPISIY--VLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629 +++ P I +L + +GV +V ER++ A +Q+R GP+ G+LQ LADG KL+ KE + PS N SLF + P + L+++ V+PF Y +VL+DLNIG+ AISS+ G++++G+ SN+KY+FLG LR+AAQ +SYE+ + L ++++ + V Sbjct: 7 MYIAVPAEILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLILKEPISPSSANFSLFRMAPVATFMLSLVAWAVVPFDYGMVLSDLNIGLLYLFAISSLGVYGIIIAGWSSNSKYAFLGALRSAAQMVSYEVSIGLILITVLICV 168
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_MARPO (NADH-ubiquinone oxidoreductase chain 1 OS=Marchantia polymorpha GN=ND1 PE=3 SV=2) HSP 1 Score: 135.576 bits (340), Expect = 3.720e-31 Identity = 66/159 (41.51%), Postives = 104/159 (65.41%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 ++ ++A I ++ + +GV +V ER++ A +Q+R GP LG+LQ LADG KL+ KE +LPS N +F + P + L ++ VIPF Y +V +DLNIG+ AISS+ G++ +G+ SN+KY+FLG LR+AAQ +SYE+ + L ++S+ L Sbjct: 5 LIGLVAKILGIIIPLLLGVAFLVLAERKVMASMQRRKGPNVVGILGLLQPLADGLKLMIKEPILPSSANIFIFLMAPVLTFTLALCAWAVIPFDYGMVFSDLNIGVLYLFAISSLGVYGIITAGWASNSKYAFLGALRSAAQMVSYEVSIGLLLISVIL 163
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_RHORT (NADH-quinone oxidoreductase subunit H OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=nuoH PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 6.345e-31 Identity = 65/164 (39.63%), Postives = 103/164 (62.80%), Query Frame = 3 Query: 144 GILWVLAPISIYVLAITIGVL----VIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 G LW I + LAI + +L + + ER++ +Q R GP P G+LQ LADG KL KE ++P+ N ++F I P + I L+++ VIPF V+AD+N+G+ A+S + G++M+G+ SN+KY+FLGGLR+AAQ +SYE+ + L ++++ L Sbjct: 7 GYLWPAIIIVLQCLAIILPMLGAIAYLTYAERKVIGAMQMRKGPNVVGPFGLLQPLADGVKLFLKETIIPTGANRAVFIIAPLMTFILALIAWAVIPFDAGWVVADINVGVLYLFAVSGLGVYGIIMAGWASNSKYAFLGGLRSAAQMVSYEVAMGLIIIAVIL 170 The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bpback to top |