CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_SYNJA (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=ndhA PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 7.461e-48
Identity = 93/158 (58.86%), Postives = 121/158 (76.58%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            LWV  P+ + V+A T+GV+V+ WLER+ISA  QQRIGP  A P G+L  +ADG KLL KE++LPS  +  LF++GP +  + + L YLV+PF  NL+++++ IG+F  IA SS+ PIGLLMSGYGSNNKYS LGGLRAAAQSISYE+PL L VL++ L
Sbjct:   29 LWVPLPMLLMVIAATLGVMVMTWLERKISAAAQQRIGPNMAGPQGVLIPIADGIKLLTKEDVLPSLADPVLFTLGPILVFLPVFLCYLVVPFGQNLLISNIAIGVFFLIATSSVQPIGLLMSGYGSNNKYSLLGGLRAAAQSISYELPLALSVLAVVL 186          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_SYNJB (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. GN=ndhA PE=3 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 2.835e-47
Identity = 91/158 (57.59%), Postives = 121/158 (76.58%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            LW+  P+ + ++A T+GV+V+ WLER+ISA  QQRIGP  A P G+L  +ADG KLL KE++LP   +  LF++GP +  + + L YLV+PF  NL+++++ IG+F  IAISS+ PIGLLMSGYGSNNKYS LGGLRAAAQSISYE+PL L VL++ L
Sbjct:   29 LWMPLPMLLLIIAATLGVMVMTWLERKISAAAQQRIGPNMAGPQGVLIPIADGIKLLTKEDVLPILADPVLFTLGPILVFLPVFLCYLVVPFGQNLLISNIAIGVFFLIAISSVQPIGLLMSGYGSNNKYSLLGGLRAAAQSISYELPLALSVLAVVL 186          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_GLOVI (NAD(P)H-quinone oxidoreductase subunit 1 OS=Gloeobacter violaceus GN=ndhA PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.902e-43
Identity = 90/170 (52.94%), Postives = 120/170 (70.59%), Query Frame = 3
Query:  108 SFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            S S L    +V   LW+  P+ + +L +T+GV+  VW ER+ S  +QQR+GP      G +Q  ADG KLL KE+++P + +  LF++GP+I +I +  SYLVIPF   LVL+D+ IGIF  IA++SI+PIG LM+GY SNNKY+ LGGLRAAAQSISYEIPL L VL+I
Sbjct:   13 SLSGLGVPADVARALWLPLPMIVILLTVTVGVIAAVWGERKWSGMMQQRMGPTIIGLGGSIQGAADGVKLLVKEDIIPVKADPWLFTLGPAIVIIPVFFSYLVIPFGQGLVLSDITIGIFFIIAVASISPIGALMAGYASNNKYALLGGLRAAAQSISYEIPLALSVLAI 182          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_DEHSC (NADH-quinone oxidoreductase subunit H OS=Dehalococcoides sp. (strain CBDB1) GN=nuoH PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.043e-33
Identity = 65/157 (41.40%), Postives = 101/157 (64.33%), Query Frame = 3
Query:  153 WVLAPISIYVLA--ITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            W+   + + +L   + + VL+ +WLER +    Q R GP  A P G+LQ +AD  K+L KE+++PS  +  +F + P +A + ++L +  IPF+  ++L DLNIGI   +A+SS+  IG+ M+G+ SNNKYS LG +R  AQ +SYEIPL L +L +
Sbjct:    5 WIHLLVYLVILFGFVIVSVLIFIWLERRLIGRFQLRPGPNRAGPFGLLQPIADAIKVLIKEDIIPSEADKGVFWLAPLVAFVPVMLMFAAIPFADGVMLVDLNIGILYILAVSSVTVIGIFMAGWSSNNKYSLLGAMRTIAQEVSYEIPLVLSILGV 161          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_PELUB (NADH-quinone oxidoreductase subunit H OS=Pelagibacter ubique GN=nuoH PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.974e-33
Identity = 68/165 (41.21%), Postives = 107/165 (64.85%), Query Frame = 3
Query:  135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            + Y IL++L P+        + V +IVWL+R I A +Q+R GP    P G+LQ+LAD  K +FKE ++PS  N  +F + P + +   L+S+ VIPFS   VLAD+N+G+    A+SS+   G++M G+ SN+KY FLG +R+AAQ +SYE+ + + ++++ L V
Sbjct:   10 QTYKILFLLVPV-------LVSVAMIVWLDRRIWAFVQKRQGPNVVGPFGLLQSLADALKYIFKEVIIPSSSNKVIFILAPIVTMTLALVSWAVIPFSTTQVLADINVGVLYLFAVSSLGVYGIIMGGWASNSKYPFLGAIRSAAQMVSYEVSIGVIIINVLLCV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_MOOTA (NADH-quinone oxidoreductase subunit H OS=Moorella thermoacetica (strain ATCC 39073) GN=nuoH PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.156e-32
Identity = 69/158 (43.67%), Postives = 105/158 (66.46%), Query Frame = 3
Query:  144 GILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            G+L+++  ++     I +  L +++LER+ISA +QQRIGP    P G+LQ++AD  KLL KE+++P   +  +F I P +  I   + Y VIPF   +V ADLNIG+F ++A++S   I +LM G+G+NNKY+ LG +R  AQ +SYEIPLT  +L +
Sbjct:   31 GVLYLIGVLAF----IFLNALYLIYLERKISAYMQQRIGPNRLGPHGLLQSVADAVKLLGKEDIIPRGADRWVFIIAPVLIFIPATMLYAVIPFGKGMVPADLNIGVFYFLAVASTTTIAILMGGWGANNKYALLGSMRCVAQMVSYEIPLTFSILGV 184          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_DEHE1 (NADH-quinone oxidoreductase subunit H OS=Dehalococcoides ethenogenes (strain 195) GN=nuoH PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.789e-32
Identity = 64/157 (40.76%), Postives = 99/157 (63.06%), Query Frame = 3
Query:  153 WVLAPISIYVLA--ITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            WV   + + +L   + + VL+ +WLER      Q R GP  A P G+LQ +AD  K+L KE+++P+  +  +F + P +A + ++L +  IPF+   +L DLNIGI   +A+SS+  IG+ M+G+ SN+KYS LG +R  AQ +SYEIPL L +L +
Sbjct:    5 WVHLLVYLVILFGFVIVSVLLFIWLERRFIGRFQLRPGPNRAGPFGLLQPIADAIKVLIKEDIIPTESDKGVFWLAPLVAFVPVMLMFAAIPFADGAMLVDLNIGILYILAVSSVTVIGIFMAGWSSNSKYSLLGAMRTIAQEVSYEIPLVLSILGV 161          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_OENBE (NADH-ubiquinone oxidoreductase chain 1 OS=Oenothera bertiana GN=ND1 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.181e-31
Identity = 66/162 (40.74%), Postives = 107/162 (66.05%), Query Frame = 3
Query:  150 LWVLAPISIY--VLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            +++  P  I   +L + +GV  +V  ER++ A +Q+R GP+     G+LQ LADG KL+ KE + PS  N SLF + P    +  L+++ V+PF Y +VL+DLNIG+    AISS+   G++++G+ SN+KY+FLG LR+AAQ +SYE+ + L ++++ + V
Sbjct:    7 MYIAVPAEILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLILKEPISPSSANFSLFRMAPVATFMLSLVAWAVVPFDYGMVLSDLNIGLLYLFAISSLGVYGIIIAGWSSNSKYAFLGALRSAAQMVSYEVSIGLILITVLICV 168          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_MARPO (NADH-ubiquinone oxidoreductase chain 1 OS=Marchantia polymorpha GN=ND1 PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 3.720e-31
Identity = 66/159 (41.51%), Postives = 104/159 (65.41%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++ ++A I   ++ + +GV  +V  ER++ A +Q+R GP     LG+LQ LADG KL+ KE +LPS  N  +F + P +     L ++ VIPF Y +V +DLNIG+    AISS+   G++ +G+ SN+KY+FLG LR+AAQ +SYE+ + L ++S+ L
Sbjct:    5 LIGLVAKILGIIIPLLLGVAFLVLAERKVMASMQRRKGPNVVGILGLLQPLADGLKLMIKEPILPSSANIFIFLMAPVLTFTLALCAWAVIPFDYGMVFSDLNIGVLYLFAISSLGVYGIITAGWASNSKYAFLGALRSAAQMVSYEVSIGLLLISVIL 163          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_RHORT (NADH-quinone oxidoreductase subunit H OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=nuoH PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.345e-31
Identity = 65/164 (39.63%), Postives = 103/164 (62.80%), Query Frame = 3
Query:  144 GILWVLAPISIYVLAITIGVL----VIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            G LW    I +  LAI + +L     + + ER++   +Q R GP    P G+LQ LADG KL  KE ++P+  N ++F I P +  I  L+++ VIPF    V+AD+N+G+    A+S +   G++M+G+ SN+KY+FLGGLR+AAQ +SYE+ + L ++++ L
Sbjct:    7 GYLWPAIIIVLQCLAIILPMLGAIAYLTYAERKVIGAMQMRKGPNVVGPFGLLQPLADGVKLFLKETIIPTGANRAVFIIAPLMTFILALIAWAVIPFDAGWVVADINVGVLYLFAVSGLGVYGIIMAGWASNSKYAFLGGLRSAAQMVSYEVAMGLIIIAVIL 170          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1C_SYNJA7.461e-4858.86NAD(P)H-quinone oxidoreductase subunit 1 OS=Synech... [more]
NU1C_SYNJB2.835e-4757.59NAD(P)H-quinone oxidoreductase subunit 1 OS=Synech... [more]
NU1C_GLOVI1.902e-4352.94NAD(P)H-quinone oxidoreductase subunit 1 OS=Gloeob... [more]
NUOH_DEHSC3.043e-3341.40NADH-quinone oxidoreductase subunit H OS=Dehalococ... [more]
NUOH_PELUB3.974e-3341.21NADH-quinone oxidoreductase subunit H OS=Pelagibac... [more]
NUOH_MOOTA1.156e-3243.67NADH-quinone oxidoreductase subunit H OS=Moorella ... [more]
NUOH_DEHE19.789e-3240.76NADH-quinone oxidoreductase subunit H OS=Dehalococ... [more]
NU1M_OENBE2.181e-3140.74NADH-ubiquinone oxidoreductase chain 1 OS=Oenother... [more]
NU1M_MARPO3.720e-3141.51NADH-ubiquinone oxidoreductase chain 1 OS=Marchant... [more]
NUOH_RHORT6.345e-3139.63NADH-quinone oxidoreductase subunit H OS=Rhodospir... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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