CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_WHEAT (NADH-ubiquinone oxidoreductase chain 1 OS=Triticum aestivum GN=ND1 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.345e-31
Identity = 66/158 (41.77%), Postives = 104/158 (65.82%), Query Frame = 3
Query:  156 VLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            V A I   +L + +GV  +V  ER++ A +Q+R GP+     G+LQ LADG KL+ KE + PS  N  LF + P    +  L+++ V+PF Y +VL+DLNIG+    AISS+   G++++G+ SN+KY+FLG LR+AAQ +SYE+ + L ++++ + V
Sbjct:    5 VPAEILCLILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLILKEPISPSSANFFLFRMAPVATFMLSLVAWAVVPFDYGMVLSDLNIGLLYLFAISSLGVYGIIIAGWSSNSKYAFLGALRSAAQMVSYEVSIGLILITVLICV 162          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_MAGSA (NADH-quinone oxidoreductase subunit H OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=nuoH PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.082e-30
Identity = 66/164 (40.24%), Postives = 102/164 (62.20%), Query Frame = 3
Query:  138 VYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            V+ +L ++  I   VL + I V  + + ER++   +Q R GP    P G+LQ +ADG KL  KE +LP+  N  +F   P +     L+++ VIPF    VLAD+N+G+    AISS+   G++M+G+ SN+KY+FLGGLR+AAQ +SYE+ +   ++S+ L V
Sbjct:   13 VWRLLIIVLQIVAIVLPLLIAVAYLTYAERKVIGAMQLRKGPNVVGPFGLLQPMADGLKLFVKETVLPTSANRVVFVGAPMLTFFLALVAWAVIPFDKGWVLADINVGVLYLFAISSLGVYGIIMAGWASNSKYAFLGGLRSAAQMVSYEVSIGFILISVLLTV 176          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_ARATH (NADH-ubiquinone oxidoreductase chain 1 OS=Arabidopsis thaliana GN=ND1 PE=1 SV=4)

HSP 1 Score: 134.035 bits (336), Expect = 1.082e-30
Identity = 65/162 (40.12%), Postives = 106/162 (65.43%), Query Frame = 3
Query:  150 LWVLAPISIY--VLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            +++  P  I   +L + +GV  +V  ER++ A +Q+R GP+     G+LQ LADG KL+ KE + PS  N  LF + P    +  L+++ V+PF Y +VL+DLNIG+    AISS+   G++++G+ SN+KY+FLG LR+AAQ +SYE+ + L ++++ + V
Sbjct:    1 MYIAVPAEILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLILKEPISPSSANFFLFRMAPVATFMLSLVAWAVVPFDYGMVLSDLNIGLLYLFAISSLGVYGIIIAGWSSNSKYAFLGALRSAAQMVSYEVSIGLILITVLICV 162          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_AZOSE (NADH-quinone oxidoreductase subunit H OS=Azoarcus sp. (strain EbN1) GN=nuoH PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.414e-30
Identity = 68/174 (39.08%), Postives = 109/174 (62.64%), Query Frame = 3
Query:  120 LESLQEVYG----ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPL---TLCVLSIS 620
            LE + +++G     +W L  I   +  + + V  +   ER++   +Q RIGP    P G+LQ +ADG KLLFKE ++P+  +  LF +GP +A+   L ++ V+PF   +VLAD+N G+   +AI+S+   G++++G+ SN+KY FLG +RAAAQ +SYE+ +    +CVL IS
Sbjct:    5 LEPVVQLFGPAWPAVWTLTKIVAIIAPLMLCVAYLTLAERKVIGYMQVRIGPNRVGPKGLLQPIADGMKLLFKEIIVPTGASKGLFILGPILAIAPSLAAWAVVPFGEGMVLADVNAGLLFLLAITSVEVYGVIIAGWASNSKYPFLGSMRAAAQMVSYEVAMGFALICVLLIS 178          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_RICTY (NADH-quinone oxidoreductase subunit H OS=Rickettsia typhi GN=nuoH PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.411e-30
Identity = 65/165 (39.39%), Postives = 110/165 (66.67%), Query Frame = 3
Query:  141 YGILWVLAPISIYVLAITIGVLVIV----WLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            Y  ++ L  I++ V+AITI +++ V    + ER +   +Q R GP    P G+LQ +AD  KLLFKE ++P+  +  LF + P I  +  L+ + VIPF+  +VLAD+N+G+   +AISS++  G++++G+ SN+KY+FLG +R++AQ ISYE+ + L ++++ L
Sbjct:    6 YEYMFPLTVIALKVVAITIPLILCVAYLTYAERRVIGLMQLRRGPNVVGPFGLLQPIADAVKLLFKEPIIPTNADKILFILAPIITFVLSLIGWAVIPFAKGVVLADINVGVLYILAISSLSVYGIIIAGWASNSKYAFLGAIRSSAQMISYEVSIGLVIVTVLL 170          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_DECAR (NADH-quinone oxidoreductase subunit H OS=Dechloromonas aromatica (strain RCB) GN=nuoH PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.411e-30
Identity = 64/160 (40.00%), Postives = 105/160 (65.62%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPL---TLCVLSIS 620
            +W L  I + V  + +GV  + + ER++   +Q RIGP    P G++Q +ADG KLL KE ++PS  N  +F I P +A+   L ++ V+PF+ +LVLA+++  +   +AI+S+   G+++SG+ SN+KY+FLG +R+AAQ +SYEI +    +CVL +S
Sbjct:   19 VWTLIKIVLIVAPMMLGVAYLTYFERKVIGYMQVRIGPNRVGPWGLIQPIADGLKLLMKEIIVPSGANKGIFIIAPMLAIAPALAAWAVVPFTDSLVLANIDASLLYIMAITSMGVYGIILSGWASNSKYAFLGAMRSAAQMVSYEISMGFSLICVLMVS 178          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_RICRS (NADH-quinone oxidoreductase subunit H OS=Rickettsia rickettsii (strain Sheila Smith) GN=nuoH PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.149e-30
Identity = 66/169 (39.05%), Postives = 112/169 (66.27%), Query Frame = 3
Query:  129 LQEVYGILWVLAPISIYVLAITIGVLVIV----WLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            L+  +  ++ L  I++ V+AITI +++ V    + ER +   +Q R GP    P G+LQ +AD  KLLFKE ++P+  +  LF + P I  I  L+ + VIPF+  +VLAD+N+G+   +AISS++  G++++G+ SN+KY+FLG +R++AQ ISYE+ + L ++++ L
Sbjct:    2 LELFFEYIFPLIIIALKVVAITIPLILCVAYLTYAERRVIGLMQLRRGPNVVGPFGLLQPIADAVKLLFKEPIIPTNADKILFILAPMITFILSLIGWAVIPFAKGVVLADINVGVLYILAISSLSVYGIIIAGWASNSKYAFLGAIRSSAQMISYEVSMGLVIITVLL 170          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_RICRO (NADH-quinone oxidoreductase subunit H OS=Rickettsia rickettsii (strain Iowa) GN=nuoH PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.149e-30
Identity = 66/169 (39.05%), Postives = 112/169 (66.27%), Query Frame = 3
Query:  129 LQEVYGILWVLAPISIYVLAITIGVLVIV----WLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            L+  +  ++ L  I++ V+AITI +++ V    + ER +   +Q R GP    P G+LQ +AD  KLLFKE ++P+  +  LF + P I  I  L+ + VIPF+  +VLAD+N+G+   +AISS++  G++++G+ SN+KY+FLG +R++AQ ISYE+ + L ++++ L
Sbjct:    2 LELFFEYIFPLIIIALKVVAITIPLILCVAYLTYAERRVIGLMQLRRGPNVVGPFGLLQPIADAVKLLFKEPIIPTNADKILFILAPMITFILSLIGWAVIPFAKGVVLADINVGVLYILAISSLSVYGIIIAGWASNSKYAFLGAIRSSAQMISYEVSMGLVIITVLL 170          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_RICB8 (NADH-quinone oxidoreductase subunit H OS=Rickettsia bellii (strain OSU 85-389) GN=nuoH PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.149e-30
Identity = 65/162 (40.12%), Postives = 109/162 (67.28%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIV----WLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++ L  I++ V+AITI +++ V    + ER +   +Q R GP    P G+LQ +AD  KLLFKE ++P+  +  LF + P I  I  L+ + VIPF+  +VLAD+N+G+   +AISS++  G++++G+ SN+KY+FLG +R++AQ ISYE+ + L ++++ L
Sbjct:    9 IFPLIIIALKVVAITIPLILCVAYLTYAERRVIGLMQLRCGPNVVGPFGLLQPIADAVKLLFKEPIIPTNADKILFVLAPMITFILSLIGWAVIPFAKGVVLADINVGVLYILAISSLSVYGIIIAGWASNSKYAFLGAIRSSAQMISYEVSMGLVIITVLL 170          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_RICAE (NADH-quinone oxidoreductase subunit H OS=Rickettsia africae (strain ESF-5) GN=nuoH PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.149e-30
Identity = 66/169 (39.05%), Postives = 112/169 (66.27%), Query Frame = 3
Query:  129 LQEVYGILWVLAPISIYVLAITIGVLVIV----WLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            L+  +  ++ L  I++ V+AITI +++ V    + ER +   +Q R GP    P G+LQ +AD  KLLFKE ++P+  +  LF + P I  I  L+ + VIPF+  +VLAD+N+G+   +AISS++  G++++G+ SN+KY+FLG +R++AQ ISYE+ + L ++++ L
Sbjct:    2 LELFFEYIFPLIIIALKVVAITIPLILCVAYLTYAERRVIGLMQLRRGPNVVGPFGLLQPIADAVKLLFKEPIIPTNSDKILFILAPMITFILSLIGWAVIPFAKGVVLADINVGVLYILAISSLSVYGIIIAGWASNSKYAFLGAIRSSAQMISYEVSMGLVIITVLL 170          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1M_WHEAT6.345e-3141.77NADH-ubiquinone oxidoreductase chain 1 OS=Triticum... [more]
NUOH_MAGSA1.082e-3040.24NADH-quinone oxidoreductase subunit H OS=Magnetosp... [more]
NU1M_ARATH1.082e-3040.12NADH-ubiquinone oxidoreductase chain 1 OS=Arabidop... [more]
NUOH_AZOSE1.414e-3039.08NADH-quinone oxidoreductase subunit H OS=Azoarcus ... [more]
NUOH_RICTY2.411e-3039.39NADH-quinone oxidoreductase subunit H OS=Rickettsi... [more]
NUOH_DECAR2.411e-3040.00NADH-quinone oxidoreductase subunit H OS=Dechlorom... [more]
NUOH_RICRS3.149e-3039.05NADH-quinone oxidoreductase subunit H OS=Rickettsi... [more]
NUOH_RICRO3.149e-3039.05NADH-quinone oxidoreductase subunit H OS=Rickettsi... [more]
NUOH_RICB83.149e-3040.12NADH-quinone oxidoreductase subunit H OS=Rickettsi... [more]
NUOH_RICAE3.149e-3039.05NADH-quinone oxidoreductase subunit H OS=Rickettsi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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