CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_RICPR (NADH-quinone oxidoreductase subunit H OS=Rickettsia prowazekii GN=nuoH PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.113e-30
Identity = 65/162 (40.12%), Postives = 109/162 (67.28%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIV----WLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++ L  I++ V+AITI +++ V    + ER +   +Q R GP    P G+LQ +AD  KLLFKE ++P+  +  LF + P I  +  L+ + VIPFS  +VLAD+N+G+   +AISS++  G++++G+ SN+KY+FLG +R++AQ ISYE+ + L ++++ L
Sbjct:    9 MFPLTVIALKVVAITIPLILCVAYLTYAERRVIGLMQLRRGPNVVGPFGLLQPIADAVKLLFKEPIIPTDADKILFILAPIITFVLSLIGWAVIPFSSGVVLADINVGVLYILAISSLSVYGIIIAGWASNSKYAFLGAIRSSAQMISYEVSMGLVIITVLL 170          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_RICCK (NADH-quinone oxidoreductase subunit H OS=Rickettsia canadensis (strain McKiel) GN=nuoH PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.113e-30
Identity = 63/156 (40.38%), Postives = 107/156 (68.59%), Query Frame = 3
Query:  168 ISIYVLAITIGVLVIV----WLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            I++ V+AIT+ +++ V    ++ER +   +Q R GP    P G+LQ +AD  KLLFKE ++P+  +  LF + P I  I  L+ + V+PF+  LVLAD+N+G+   +AISS++  G++++G+ SN+KY+FLG +R++AQ ISYE+ + L ++++ L
Sbjct:   15 IALKVVAITVPLILCVAYLTYVERRVIGLMQLRRGPNVVGPFGLLQPIADAVKLLFKEPIIPTNSDRILFILAPMITFILSLIGWAVVPFAKGLVLADINVGVLYILAISSLSVYGIIIAGWASNSKYAFLGAIRSSAQMISYEVSMGLVIITVLL 170          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_THIDA (NADH-quinone oxidoreductase subunit H OS=Thiobacillus denitrificans (strain ATCC 25259) GN=nuoH PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.372e-30
Identity = 64/157 (40.76%), Postives = 102/157 (64.97%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            + W L  I   V+ + +GV  + + ER+I   +Q RIGP      G+LQ +AD  KLL KE ++PS  + +LF +GP +A+   L ++ VIPFS  LVLAD+N G+   +AI+S+   G++++G+ SN+KY+FLG +R+AAQ +SYEI +   ++ +
Sbjct:   19 VAWTLVKIMALVVPLMLGVAYLTYAERKIIGWMQVRIGPNRVGFQGLLQPIADAVKLLMKEIIIPSGASRALFILGPILAIAPALAAWAVIPFSDGLVLADINAGLLYVMAITSMGVYGVIIAGWASNSKYAFLGAMRSAAQIVSYEIAMGFALVGV 175          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_RICFE (NADH-quinone oxidoreductase subunit H OS=Rickettsia felis GN=nuoH PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.372e-30
Identity = 65/162 (40.12%), Postives = 109/162 (67.28%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIV----WLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++ L  I++ V+AITI +++ V    + ER +   +Q R GP    P G+LQ +AD  KLLFKE ++P+  +  LF + P I  I  L+ + VIPF+  +VLAD+N+G+   +AISS++  G++++G+ SN+KY+FLG +R++AQ ISYE+ + L ++++ L
Sbjct:    9 IFPLIIIALKVVAITIPLILCVAYLTYAERRVIGLMQLRRGPNVVGPFGLLQPIADAVKLLFKEPIIPTNSDKILFILAPMITFILSLIGWAVIPFAKGVVLADINVGVLYILAISSLSVYGIIIAGWASNSKYAFLGAIRSSAQMISYEVSMGLVIITVLL 170          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_RICCN (NADH-quinone oxidoreductase subunit H OS=Rickettsia conorii GN=nuoH PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.372e-30
Identity = 66/169 (39.05%), Postives = 112/169 (66.27%), Query Frame = 3
Query:  129 LQEVYGILWVLAPISIYVLAITIGVLVIV----WLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            L+  +  ++ L  I++ V+AITI +++ V    + ER +   +Q R GP    P G+LQ +AD  KLLFKE ++P+  +  LF + P I  I  L+ + VIPF+  +VLAD+N+G+   +AISS++  G++++G+ SN+KY+FLG +R++AQ ISYE+ + L ++++ L
Sbjct:    2 LELFFEYIFPLIIIALKVVAITIPLILCVAYLTYAERRVIGLMQLRRGPNVVGPFGLLQPIADAVKLLFKEPIIPTNSDKILFILAPMITFILSLIGWAVIPFAKGVVLADINVGVLYILAISSLSVYGIIIAGWASNSKYAFLGAIRSSAQMISYEMSMGLVIITVLL 170          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_RICBR (NADH-quinone oxidoreductase subunit H OS=Rickettsia bellii (strain RML369-C) GN=nuoH PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.372e-30
Identity = 65/162 (40.12%), Postives = 109/162 (67.28%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIV----WLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++ L  I++ V+AITI +++ V    + ER +   +Q R GP    P G+LQ +AD  KLLFKE ++P+  +  LF + P I  I  L+ + VIPF+  +VLAD+N+G+   +AISS++  G++++G+ SN+KY+FLG +R++AQ ISYE+ + L ++++ L
Sbjct:    9 IFPLIIIALKVVAITIPLILCVAYLTYAERRVIGLMQLRRGPNVVGPFGLLQPIADAVKLLFKEPIIPTNADKILFVLAPMITFILSLIGWAVIPFAKGVVLADINVGVLYILAISSLSVYGIIIAGWASNSKYAFLGAIRSSAQMISYEVSMGLVIITVLL 170          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BREBN (NADH-quinone oxidoreductase subunit H OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=nuoH PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.015e-30
Identity = 66/159 (41.51%), Postives = 103/159 (64.78%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIG-VLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            LW +   ++ +LA+ +G V   ++ ER++   +Q RIGP    PLG+LQ +AD  KLL KE++ P   + +LF++ P +A         V+PF+ ++  ADL IG+  +IA+S I  +G++ +G+ SNNKYS +GGLR+AAQ ISYE+PL + V+ I L
Sbjct:   16 LWFIIA-AVLLLAVVLGFVTYAIYFERKVIGWMQLRIGPNRVGPLGLLQTVADVAKLLLKEDIRPQHADKALFTLAPILAYAPAFAVLAVMPFTDSIRFADLGIGLLYYIALSGITVLGVITAGWASNNKYSLIGGLRSAAQMISYEVPLVMSVVGIVL 173          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_RICAH (NADH-quinone oxidoreductase subunit H OS=Rickettsia akari (strain Hartford) GN=nuoH PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.162e-30
Identity = 65/162 (40.12%), Postives = 107/162 (66.05%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIV----WLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++ L  I++ V+AITI +++ V    + ER +   +Q R GP    P G+LQ +AD  KLLFKE ++P   +  LF + P I  I  L+ + VIPFS  +VLAD+N+G+   +AISS++  G++++G+ SN+KY+FLG +R++AQ ISYE+ +   ++++ L
Sbjct:    9 IFPLIIIALKVVAITIPLILCVAYLTYAERRVIGLMQLRCGPNVVGPFGLLQPIADAVKLLFKEPIIPINADKILFILAPMITFILSLIGWAVIPFSKGVVLADINVGVLYILAISSLSVYGIIIAGWASNSKYAFLGAIRSSAQMISYEVSMGFVIITVLL 170          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_RICPU (NADH-quinone oxidoreductase subunit H OS=Rickettsia peacockii (strain Rustic) GN=nuoH PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.197e-29
Identity = 65/169 (38.46%), Postives = 111/169 (65.68%), Query Frame = 3
Query:  129 LQEVYGILWVLAPISIYVLAITIGVLVIV----WLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            L+  +  ++ L  I++ V+AIT  +++ V    + ER +   +Q R GP    P G+LQ +AD  KLLFKE ++P+  +  LF + P I  I  L+ + VIPF+  +VLAD+N+G+   +AISS++  G++++G+ SN+KY+FLG +R++AQ ISYE+ + L ++++ L
Sbjct:    2 LELFFEYIFPLIIIALKVVAITTPLILCVAYLTYAERRVIGLMQLRRGPNVVGPFGLLQPIADAVKLLFKEPIIPTNSDKILFILAPMITFILSLIGWAVIPFAKGVVLADINVGVLYILAISSLSVYGIIIAGWASNSKYAFLGAIRSSAQMISYEVSMGLVIITVLL 170          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_PODAN (NADH-ubiquinone oxidoreductase chain 1 OS=Podospora anserina GN=ND1 PE=3 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 1.197e-29
Identity = 63/159 (39.62%), Postives = 103/159 (64.78%), Query Frame = 3
Query:  141 YGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            Y I+  L  + + ++   +G+  +   ER+  A +Q+R+GP +    G+LQA AD  KLL KE + P++ N  LF +GP I +I  LL Y VIP+  +L + D ++GI+  +A+SS+A  G+L++G+ +N+KY+FLG LR+ AQ ISYE+ L+  +L +
Sbjct:    3 YSIIISLIEVVLVLVPALLGIAYVTIAERKTMASMQRRLGPNFVGYYGLLQAFADALKLLLKEYVAPTQANIILFFLGPVITLIFSLLGYAVIPYGPSLAINDFSLGIYYILAVSSLATYGILLAGWSANSKYAFLGSLRSTAQLISYELVLSSAILLV 161          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOH_RICPR4.113e-3040.12NADH-quinone oxidoreductase subunit H OS=Rickettsi... [more]
NUOH_RICCK4.113e-3040.38NADH-quinone oxidoreductase subunit H OS=Rickettsi... [more]
NUOH_THIDA5.372e-3040.76NADH-quinone oxidoreductase subunit H OS=Thiobacil... [more]
NUOH_RICFE5.372e-3040.12NADH-quinone oxidoreductase subunit H OS=Rickettsi... [more]
NUOH_RICCN5.372e-3039.05NADH-quinone oxidoreductase subunit H OS=Rickettsi... [more]
NUOH_RICBR5.372e-3040.12NADH-quinone oxidoreductase subunit H OS=Rickettsi... [more]
NUOH_BREBN7.015e-3041.51NADH-quinone oxidoreductase subunit H OS=Brevibaci... [more]
NUOH_RICAH9.162e-3040.12NADH-quinone oxidoreductase subunit H OS=Rickettsi... [more]
NUOH_RICPU1.197e-2938.46NADH-quinone oxidoreductase subunit H OS=Rickettsi... [more]
NU1M_PODAN1.197e-2939.62NADH-ubiquinone oxidoreductase chain 1 OS=Podospor... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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