CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_SPHAL (NADH-quinone oxidoreductase subunit H OS=Sphingopyxis alaskensis GN=nuoH PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.563e-29
Identity = 67/170 (39.41%), Postives = 103/170 (60.59%), Query Frame = 3
Query:  123 ESLQEVYGILWVLAPIS---IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +SL   Y   W LA ++   +  L + + V +I++ +R+I A I  R GP    P G+LQ+ ADG K+  +E ++PS  N  LF I P I     LL++ VIPF+   VLAD+N+G+   +AISS+   G+++SG+ SN+KY F   LRA+AQ ISYE+ +   ++ + L
Sbjct:    6 QSLGMSYEWAWGLATVAGILLIALPLMLAVAMIIYADRKIWAAIALRRGPNVVGPFGLLQSFADGLKVFLQETIIPSGANRGLFLIAPIITFTVALLAWAVIPFNSGAVLADINVGLLYILAISSLGVYGVILSGWASNSKYPFFSALRASAQMISYEVSIGFILIGVVL 175          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_PETHY (NADH-ubiquinone oxidoreductase chain 1 OS=Petunia hybrida GN=ND1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.563e-29
Identity = 64/162 (39.51%), Postives = 104/162 (64.20%), Query Frame = 3
Query:  150 LWVLAPISIY--VLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            +++  P  I   +L + +GV  +V  ER++ A +Q+R GP+     G+LQ LADG KL+ KE + PS  N SLF + P    +  L++  V+PF Y +VL+D NIG+    AISS+   G++++G+ SN+KY+FLG LR+AAQ + YE+ + L ++++ + V
Sbjct:    1 MYIAVPAEILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLILKEPISPSSANFSLFRMAPVATFMLSLVARAVVPFDYGMVLSDPNIGLLYLFAISSLGVYGIIIAGWSSNSKYAFLGALRSAAQMVPYEVSIGLILITVLICV 162          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_NEUCR (NADH-ubiquinone oxidoreductase chain 1 OS=Neurospora crassa GN=ND1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.563e-29
Identity = 68/157 (43.31%), Postives = 103/157 (65.61%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L VL P  + V  +T+        ER+  A +Q+R+GP     LG+LQA AD  KLL KE +  ++ N +LF +GP I +I  LL Y VIP+  +LV+ D+N+GI   +A+SS+A  G+L++G+ +N+KY+FLG LR+AAQ ISYE+ L+  +L +
Sbjct:   13 VLLVLVPSLLAVAYVTVA-------ERKTMASMQRRLGPNAVGYLGLLQAFADALKLLLKEYVALTQANMTLFFLGPVITLIFSLLGYAVIPYGPSLVIQDVNLGILYMLAVSSLATYGILLAGWSANSKYAFLGSLRSAAQLISYELVLSSAILLV 162          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_MAGSM (NADH-quinone oxidoreductase subunit H OS=Magnetococcus sp. (strain MC-1) GN=nuoH PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.041e-29
Identity = 61/162 (37.65%), Postives = 101/162 (62.35%), Query Frame = 3
Query:  132 QEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            + ++ ++W +  I++ +  I   V  +   ER +   +Q R+GP      GILQ LAD  KL  KE +LP++ + ++F + P +     L+S+ V+PFS  LVLAD+N+G+   +A+SS+   G+L+SG+ SN +YS LGGLR+AAQ ISYE+ +   ++ +
Sbjct:   18 ETLWTLVWTILKIAVLIAPILFCVTYLTLAERRLIGFMQVRLGPNRVGVFGILQPLADAVKLFVKETMLPAKAHRTMFILAPILTFSTALVSWAVVPFSPELVLADVNVGVLFILAMSSLGAYGVLLSGWASNTRYSLLGGLRSAAQMISYEVSMGFTLVPV 179          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_CHOCR (NADH-ubiquinone oxidoreductase chain 1 OS=Chondrus crispus GN=ND1 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.041e-29
Identity = 64/159 (40.25%), Postives = 100/159 (62.89%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +L +L  I   +L + + V  +   ER++ A IQ+R GP      G+LQ LADG KL  KE +LPS  N  +F + P +  +  L+S+ VIP    +V +D+NIG+   +AISS+   G++ SG+ SN+KY+FLG LR+AAQ +SYE+ + L ++++ L
Sbjct:    3 LLSLLIKIITIILPLLVAVAYMTLAERKVMAAIQRRKGPNIVGVFGLLQPLADGLKLFVKETILPSSANIIIFILAPILTFLLALVSWCVIPLGEGMVYSDINIGVLYILAISSLGVYGIITSGWASNSKYAFLGALRSAAQMVSYEVSIGLILINVLL 161          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_RHOCS (NADH-quinone oxidoreductase subunit H OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=nuoH PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.666e-29
Identity = 62/158 (39.24%), Postives = 103/158 (65.19%), Query Frame = 3
Query:  156 VLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            ++A I   ++ I + V  +V+ ER++   +Q R GP    P GILQ+ AD  K++ KE ++P+  N  +F   P + ++  L ++ VIPF   LV++D+N+GI   +AISS    G++M+G+ SN+KY+FLGGLR+AAQ +SYE+ + L ++++ L V
Sbjct:   15 IVAQILALMVPILVSVAFLVYAERKVLGLMQLRQGPNMVGPWGILQSFADALKMIGKETIIPAGANRIIFLAAPMLTMMLALAAWAVIPFGEGLVISDINVGILYLLAISSQGVYGIIMAGWASNSKYAFLGGLRSAAQMVSYEVSIGLVIITVLLCV 172          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_SALRD (NADH-quinone oxidoreductase subunit H OS=Salinibacter ruber (strain DSM 13855) GN=nuoH PE=3 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 3.482e-29
Identity = 60/159 (37.74%), Postives = 105/159 (66.04%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++W      + + A+ +   ++V+ ER +SA IQ R GP    PLG+LQ  AD  K + KE++ P++ N  + S+ P + V+  + +  +IPF+  +V+ADLN+G+ + +A++SI+  G+ ++G+ SN+K+S LGGLR+AAQ +SYE+ + L V+S+ L
Sbjct:    5 MVWTALGAFLVINAMLLSASLLVFAERRVSAFIQNRPGPNRVGPLGLLQPFADVLKFVLKEDVQPAQSNKFIHSMAPVVMVVIAMTTASLIPFAEGVVVADLNVGVIMLLALTSISVYGVTLAGWSSNSKFSLLGGLRSAAQMVSYELSMGLAVISVVL 163          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_AZOSB (NADH-quinone oxidoreductase subunit H OS=Azoarcus sp. (strain BH72) GN=nuoH PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.482e-29
Identity = 66/174 (37.93%), Postives = 108/174 (62.07%), Query Frame = 3
Query:  120 LESLQEVYG----ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPL---TLCVLSIS 620
            L+ + +++G    ++W L  I   V  +   V  +   ER++   +Q RIGP    P G+LQ +ADG KLL KE + PS  +  LF +GP +A+   L+++ V+PF   LVLA++N G+   +A++S+   G++++G+ SN+KY F+G +RAAAQ +SYE+ +    +CVL IS
Sbjct:    5 LQPVADLFGPSWPVVWTLLKIVAIVAPLMGCVAYLTLAERKVIGYMQVRIGPNRVGPFGLLQPIADGVKLLLKEIIFPSSASKGLFIVGPILALAPSLVAWAVVPFDDGLVLANVNAGLLFLLAVTSMEVYGVIVAGWASNSKYPFIGAMRAAAQMVSYEVSMGFALICVLLIS 178          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NQO8_RHOMR (NADH-quinone oxidoreductase subunit 8 OS=Rhodothermus marinus GN=nqo8 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.482e-29
Identity = 62/160 (38.75%), Postives = 104/160 (65.00%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLR 626
            + W      + + A+ +   V+V+ ER+IS  IQ R+GP    P G LQ  AD  KLLFKE+++P++ N  + ++ P+I V   +    +IPF+  +V+AD+++G+   +A++SI+  G+ ++G+ SN+KYS LGGLR++AQ ISYE+ +   VLS+ L+
Sbjct:    5 LYWTALIAFLIINAMLLTASVLVYAERKISGFIQHRLGPNRVGPAGFLQPFADVVKLLFKEDIIPAQANRFIHALAPTIMVTIAMTVPALIPFARGVVIADIDVGVLAILALTSISVYGITLAGWSSNSKYSLLGGLRSSAQMISYELAMGTAVLSVILQ 164          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_ERYLH (NADH-quinone oxidoreductase subunit H OS=Erythrobacter litoralis (strain HTCC2594) GN=nuoH PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.756e-29
Identity = 56/155 (36.13%), Postives = 98/155 (63.23%), Query Frame = 3
Query:  159 LAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +A I +  L + + V ++++++R++   I  R GP    P G+LQ+ ADG K+  +E ++PS  N  +F + P +  +  L+++ VIPF   +VLAD+N+G+   +AISS+   G++M+G+ SN+KY F   +RAAAQ ISYE+ +   ++ + L
Sbjct:   21 IAGILLIALPVMLAVAMVIYVDRKVLGAIMLRRGPNVVGPFGLLQSFADGLKVFLQETIIPSAANKGIFLLAPIVTFVVALVAWAVIPFGDGMVLADINVGLLYVLAISSLGVYGIVMAGWASNSKYPFFSAMRAAAQMISYEVSIGFILICVVL 175          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOH_SPHAL1.563e-2939.41NADH-quinone oxidoreductase subunit H OS=Sphingopy... [more]
NU1M_PETHY1.563e-2939.51NADH-ubiquinone oxidoreductase chain 1 OS=Petunia ... [more]
NU1M_NEUCR1.563e-2943.31NADH-ubiquinone oxidoreductase chain 1 OS=Neurospo... [more]
NUOH_MAGSM2.041e-2937.65NADH-quinone oxidoreductase subunit H OS=Magnetoco... [more]
NU1M_CHOCR2.041e-2940.25NADH-ubiquinone oxidoreductase chain 1 OS=Chondrus... [more]
NUOH_RHOCS2.666e-2939.24NADH-quinone oxidoreductase subunit H OS=Rhodospir... [more]
NUOH_SALRD3.482e-2937.74NADH-quinone oxidoreductase subunit H OS=Salinibac... [more]
NUOH_AZOSB3.482e-2937.93NADH-quinone oxidoreductase subunit H OS=Azoarcus ... [more]
NQO8_RHOMR3.482e-2938.75NADH-quinone oxidoreductase subunit 8 OS=Rhodother... [more]
NUOH_ERYLH7.756e-2936.13NADH-quinone oxidoreductase subunit H OS=Erythroba... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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