CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_DESHY (NADH-quinone oxidoreductase subunit H OS=Desulfitobacterium hafniense (strain Y51) GN=nuoH PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.756e-29
Identity = 62/148 (41.89%), Postives = 93/148 (62.84%), Query Frame = 3
Query:  174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            + ++ I I  L+++ LER+I+    QR GP    P G  Q +AD  KLL KE+L P+  +  +F I P       +L+  +IPF Y + + DL +G+F ++ I+S++ + LLM+G+ SNNKYS LGG+RA AQ ISYEIPL   +L +
Sbjct:   41 LIIVVIVISALLLIVLERKIAGWGSQRPGPNRLGPRGWFQTIADALKLLGKEDLTPANADRIMFKIAPMFIFGIPILTLTIIPFGYAMTVIDLELGVFFYLGITSVSTLALLMAGWSSNNKYSLLGGMRAVAQMISYEIPLIFSLLGV 188          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH1_ACIBL (NADH-quinone oxidoreductase subunit H 1 OS=Acidobacteria bacterium (strain Ellin345) GN=nuoH1 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.756e-29
Identity = 59/156 (37.82%), Postives = 100/156 (64.10%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            LW    I +     ++ V+++ +LER++ A +Q R+GP    P G+LQ +AD  KLL KE+++P   +  LF + P   ++    +YLVIPF  +  + D+NIG+   I ISS+  + ++M+G+ SN+KY+ +GGLR+AAQ +SYE+ + L ++S+
Sbjct:   22 LWATVYILVIFGVASVAVMLMTYLERKVLAHMQIRLGPMRVGPHGLLQPIADALKLLIKEDIVPDGADKFLFWMAPVTVMMTAFTTYLVIPFGRSHAVTDMNIGVLFMIGISSLGVLAVVMAGWSSNSKYALMGGLRSAAQMVSYEVAMGLAIVSV 177          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_VEREI (NADH-quinone oxidoreductase subunit H OS=Verminephrobacter eiseniae (strain EF01-2) GN=nuoH PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.013e-28
Identity = 63/160 (39.38%), Postives = 104/160 (65.00%), Query Frame = 3
Query:  138 VYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            V+ +LW+L  I   ++ +   V  +   ER++   +Q R GP    P G+LQ +AD  KLL KE + P+  +  LF +GP +A++  L +++VIPF  ++ LA++N G+ L +AI+SI   G++++G+ SN+KY+FLG LRA+AQ +SYEI +  C+L +
Sbjct:   22 VWPVLWILLKIVALLIPLMGAVAYLTLWERKLLGFMQVRHGPNRVGPWGLLQPIADALKLLTKEIIQPTAASRGLFVLGPVMAIMPALAAWVVIPFGPDVALANVNAGLLLVMAITSIEVYGVIIAGWASNSKYAFLGALRASAQMVSYEIAMGFCLLIV 181          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH1_SYNFM (NADH-quinone oxidoreductase subunit H 1 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=nuoH1 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.013e-28
Identity = 62/164 (37.80%), Postives = 99/164 (60.37%), Query Frame = 3
Query:  144 GILWVLAPISIYVLAI--TIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            G  WV   + + ++     +  L +VWLER+++  IQ R GP    P G+LQ + DG KL+ KE + P   +  LF + P +  + +L+ +LV+PF   L+L D+N+GI L  + S+   + +L  G+ SNNKY+ LG +R+  Q+++YEIPL L V+S+ L V
Sbjct:    6 GTEWVRLIVGLVIILAFSQLNALFLVWLERKVAGRIQLRPGPMEVGPHGLLQTIMDGIKLVGKELITPRSVDRKLFILAPVLVFMPVLVGFLVLPFGPGLILRDMNVGILLIFSFSTFTVLAILAGGWASNNKYALLGAIRSVGQNVAYEIPLLLTVMSVVLMV 169          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_ACIAC (NADH-quinone oxidoreductase subunit H OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=nuoH PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.323e-28
Identity = 65/160 (40.62%), Postives = 101/160 (63.12%), Query Frame = 3
Query:  138 VYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            V+ +LW L  I   V  +   V  +   ER++   +Q R GP    P G+LQ LADG KLL KE + P+  +  LF +GP +A++  L +++ IPF  ++ LA++N G+ L +AI+SI   G++++G+ SN+KY+FLG LRA+AQ +SYEI +  C L +
Sbjct:   22 VWPVLWNLLKIVAIVAPLMGAVAYLTLWERKLLGFMQVRHGPNRVGPFGLLQPLADGLKLLTKEIIQPAAASKGLFVLGPVMAIMPALAAWVAIPFGPDVALANVNAGLLLIMAITSIEVYGVIIAGWASNSKYAFLGALRASAQMVSYEIAMGFCFLVV 181          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH1_NITOC (NADH-quinone oxidoreductase subunit H 1 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=nuoH1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.323e-28
Identity = 67/166 (40.36%), Postives = 105/166 (63.25%), Query Frame = 3
Query:  120 LESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            L SL  ++GIL  L         +T+  L+I W+ER +    Q+R GP    P GILQ +AD  KLL KE+ +P   +  +F + P++ VIA LL++ VIPF+  + + DLNIG+  ++A+SS++   +++ G+ SNNKYS +G LRAAAQ +SYE+ + L ++ +
Sbjct:    5 LTSLFNIFGILGTL---------LTLAALLI-WIERRLLGFWQERYGPNRVGPFGILQVVADAIKLLTKEDWVPPFADKLVFILAPTVVVIATLLAFAVIPFTPYIGIIDLNIGLLFFLAMSSLSVYSVVLGGWASNNKYSLMGALRAAAQMLSYEVFMGLSLMGV 160          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH2_CYTH3 (NADH-quinone oxidoreductase subunit H 2 OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=nuoH2 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.728e-28
Identity = 64/162 (39.51%), Postives = 102/162 (62.96%), Query Frame = 3
Query:  138 VYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++ +L+VL  I +Y +        +VW ER+++A IQ R+GP    P G+LQ +AD  KLL KE+++ +  N  LF + P +   AI   +  +PF+ +L+ +  ++G+F  I I S+  +G+ ++G+ SNNK+S LG  RA AQ ISYEIPLTL +L++ L
Sbjct:    1 MFVVLFVLTLILLYAV-------FVVWAERKVAAFIQDRLGPMEVGPYGMLQTIADLIKLLQKEDIIATGANRFLFRLAPVLIFTAIFAGFATLPFAPDLIGSKADVGVFFMITIVSLDVVGIFLAGWASNNKFSILGAFRAIAQVISYEIPLTLSILAVVL 155          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_RHOCA (NADH-quinone oxidoreductase subunit H OS=Rhodobacter capsulatus GN=nuoH PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.947e-28
Identity = 55/143 (38.46%), Postives = 98/143 (68.53%), Query Frame = 3
Query:  189 ITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            + IG+L++VW +R+I A +Q R GP      G+LQ++AD  K +FKE ++P+  +  ++ + P ++++  LL+++V+PF+   V+AD+N+ +    A+SS+   G++M G+ SN+KY FLG LR+AAQ ISYE+ + L ++ +
Sbjct:   26 VMIGLLLLVWGDRKIWAAVQMRKGPNVVGAFGLLQSVADAAKYVFKEIVVPAGVDKPVYFLAPMLSLVLALLAWVVVPFNEGWVMADINVAVLFVFAVSSLEVYGVIMGGWASNSKYPFLGSLRSAAQMISYEVSMGLIIVGV 168          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_POLNA (NADH-quinone oxidoreductase subunit H OS=Polaromonas naphthalenivorans (strain CJ2) GN=nuoH PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.947e-28
Identity = 64/161 (39.75%), Postives = 106/161 (65.84%), Query Frame = 3
Query:  138 VYGILWVLAPISIYVLAITIGVLVIVWL-EREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            V+ +LWVL  I + VLA  +G +  + L ER+     Q R+GP    P G+LQ +AD  KLL KE ++P+  +  LF +GP + ++  L ++ VIPF  ++ LA++N G+   +AI+S+   G++++G+GSN+KY+FLG +RA+AQ +SYEI +  C++ +
Sbjct:   21 VWPVLWVLIKI-VAVLAPLMGCVAYLTLWERKAIGFTQVRVGPNRIGPFGLLQPIADALKLLTKEIIIPTAASKGLFILGPIMTIMPALAAWAVIPFGPDVALANVNAGLLFIMAITSLEVYGVIIAGWGSNSKYAFLGAMRASAQMVSYEIAMGFCLVVV 180          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_ORITI (NADH-quinone oxidoreductase subunit H OS=Orientia tsutsugamushi (strain Ikeda) GN=nuoH PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.028e-28
Identity = 62/155 (40.00%), Postives = 108/155 (69.68%), Query Frame = 3
Query:  168 ISIYVLAITIGVLV----IVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWI-AISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +SI V+A+ I +L+    + + ER++ A +Q R+GP  A P G+LQ +AD  KL+FKE ++P++ +  LF I P I  +  LL + VIP  +++VL+ ++IG  L+I A++S+   G++++G+ SN+KY+FLG +R+AAQ ISYE+ + L ++++
Sbjct:   24 VSIKVIALIICLLLATAYLTFAERKVIAYMQLRVGPSLAGPFGLLQPIADAVKLVFKEPIIPAKADRKLFIIAPIITFVLSLLGWSVIPIDHDIVLSRIHIGGILFILAVTSLGVYGIIIAGWASNSKYAFLGAVRSAAQMISYELAMALSIVAV 178          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOH_DESHY7.756e-2941.89NADH-quinone oxidoreductase subunit H OS=Desulfito... [more]
NUOH1_ACIBL7.756e-2937.82NADH-quinone oxidoreductase subunit H 1 OS=Acidoba... [more]
NUOH_VEREI1.013e-2839.38NADH-quinone oxidoreductase subunit H OS=Vermineph... [more]
NUOH1_SYNFM1.013e-2837.80NADH-quinone oxidoreductase subunit H 1 OS=Syntrop... [more]
NUOH_ACIAC1.323e-2840.63NADH-quinone oxidoreductase subunit H OS=Acidovora... [more]
NUOH1_NITOC1.323e-2840.36NADH-quinone oxidoreductase subunit H 1 OS=Nitroso... [more]
NUOH2_CYTH31.728e-2839.51NADH-quinone oxidoreductase subunit H 2 OS=Cytopha... [more]
NUOH_RHOCA2.947e-2838.46NADH-quinone oxidoreductase subunit H OS=Rhodobact... [more]
NUOH_POLNA2.947e-2839.75NADH-quinone oxidoreductase subunit H OS=Polaromon... [more]
NUOH_ORITI5.028e-2840.00NADH-quinone oxidoreductase subunit H OS=Orientia ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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