CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_NOVAD (NADH-quinone oxidoreductase subunit H OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=nuoH PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.028e-28
Identity = 59/155 (38.06%), Postives = 99/155 (63.87%), Query Frame = 3
Query:  159 LAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +A I +  L + +GV +I++ +R+I A +  R GP    PLG+LQ+ ADG K+  +E ++P+  N  LF I P I     L+++ VIPF+   VLA++N+G+   +AISS+   G++++G+ SN+KY F   +RA+AQ ISYE+ +   ++ + L
Sbjct:   21 IAGILLIALPLMLGVAMIIYADRKIWAAMALRRGPNVVGPLGLLQSFADGLKVFLQETIIPTAANKGLFLIAPIITFTVALMAWAVIPFNSGAVLANINVGLLYVLAISSLGVYGVVIAGWSSNSKYPFFSAMRASAQMISYEVSIGFILICVVL 175          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_CYACA (NADH-ubiquinone oxidoreductase chain 1 OS=Cyanidium caldarium GN=ND1 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.028e-28
Identity = 61/149 (40.94%), Postives = 96/149 (64.43%), Query Frame = 3
Query:  177 YVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            Y++ + I +  +  +ER+I   IQ+R GP      G+LQ +ADG KLL KE  LP+  N  +F I P +     L ++ ++PF+     ++LNIGI   +AISS+   G+++SG+ SN+KY+FLGGLR+AAQ ISYE+ + L ++++ L
Sbjct:   30 YIIPLIIAIAYLTLIERKIIGSIQKRKGPNIVGIFGLLQPIADGLKLLLKETSLPNSANIFIFIIAPILTFFLALCAWAIMPFNEINFYSNLNIGILYLLAISSLGVYGIIISGWASNSKYAFLGGLRSAAQIISYEVSIGLIIINVLL 178          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_ORITB (NADH-quinone oxidoreductase subunit H OS=Orientia tsutsugamushi (strain Boryong) GN=nuoH PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.566e-28
Identity = 62/155 (40.00%), Postives = 108/155 (69.68%), Query Frame = 3
Query:  168 ISIYVLAITIGVLV----IVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWI-AISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +SI V+A+ I +L+    + + ER++ A +Q R+GP  A P G+LQ +AD  KL+FKE ++P++ +  LF I P I  +  LL + VIP  +++VL+ ++IG  L+I A++S+   G++++G+ SN+KY+FLG +R+AAQ ISYE+ + L ++++
Sbjct:   24 VSIKVIALIICLLLATAYLTFAERKVIAYMQLRVGPSLAGPFGLLQPIADAIKLVFKEPIIPAKADRKLFIIAPIITFVLSLLGWSVIPIDHDIVLSRIHIGGILFILAVTSLGVYGIIIAGWASNSKYAFLGAVRSAAQMISYELAMALSIVAV 178          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_MESSB (NADH-quinone oxidoreductase subunit H OS=Mesorhizobium sp. (strain BNC1) GN=nuoH PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.576e-28
Identity = 65/173 (37.57%), Postives = 108/173 (62.43%), Query Frame = 3
Query:  120 LESLQEVY---GILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            +ES   +Y   G+L +L  +++ V+ + +GV  I++ +R+I A +Q R GP    P G+ QA AD  K +FKE ++PS  N  +F + P +A    L ++ VIP S    +A++N+GI    AI+S+   G++M+G+ SN+KY FLG LR+AAQ +SYE+ +   ++++ L V
Sbjct:    1 MESFVTLYVLPGLLILLKSVALIVILL-VGVAYILYADRKIWAAVQLRRGPNVVGPWGLFQAFADLFKFVFKEPVIPSGANKGVFLLAPVVAAGLALAAWAVIPVSEGWAIANINVGILYVFAIASLEVYGVIMAGWASNSKYPFLGALRSAAQMVSYEVSIGFVIVTVLLAV 172          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_LEGPH (NADH-quinone oxidoreductase subunit H OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=nuoH PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.576e-28
Identity = 60/159 (37.74%), Postives = 99/159 (62.26%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++W++  I + V+ + I V  + + ER++   IQ RIGP      G+LQ  AD  KL+ KE ++P+R N  LF I P  A++  L+ + VIPF   +VLA++N G+    A+SS+   G+L++G+ SN+KY+  G LR+ AQ++SYEI +   ++ + L
Sbjct:    8 LIWIIIKILVIVVPLLISVAYLTYAERKVIGYIQVRIGPNRVGLKGLLQPFADLLKLITKEIIVPTRSNKYLFVIAPLFALVPSLVGWAVIPFQEGIVLANINAGVLYLFAMSSLGVYGVLIAGWASNSKYAMFGALRSTAQTVSYEIAMGFALVGVLL 166          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_HYPNA (NADH-quinone oxidoreductase subunit H OS=Hyphomonas neptunium (strain ATCC 15444) GN=nuoH PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.576e-28
Identity = 61/176 (34.66%), Postives = 106/176 (60.23%), Query Frame = 3
Query:  120 LESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFS------YNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            +ESL  ++G L VL  I ++ L + + +  ++ L+R++ AG+  R GP    P G+LQ+ AD  K L KE ++P+  N ++F + P +      +++  IP +       + V+A+LN+G+    AISS+   G++M G+ SN+KY FLG LR+AAQ +SYE+ +   ++++ L V
Sbjct:    5 IESLGSLWGPLLVLGQIGLFTLVLLLSIAFLLLLDRKVWAGVMMRKGPNVVGPFGLLQSFADFGKFLLKEIVIPAGANKAVFILAPILTCTLAFVTWAAIPVAPGTATGTSWVIANLNVGVLYLFAISSLGVYGIIMGGWASNSKYPFLGALRSAAQMVSYEVSIGFVIVTVILLV 180          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_ACISJ (NADH-quinone oxidoreductase subunit H OS=Acidovorax sp. (strain JS42) GN=nuoH PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.576e-28
Identity = 64/157 (40.76%), Postives = 98/157 (62.42%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            ++W L  I   VL +   V  +   ER++   +Q R GP    P G+LQ +AD  KLL KE + P+     LF +GP +A++  L ++ VIPF  +L LA++N G+ L +AI+SI   G++++G+ SN+KY+FLG LRA+AQ +SYEI +  C L +
Sbjct:   25 VIWNLIKIICVVLPLLGAVAYLTLWERKLLGFMQVRFGPNRVGPFGLLQPIADALKLLTKELIQPAAAAKGLFYLGPVMAIMPALGAWAVIPFGPDLALANVNAGLLLVMAITSIEVYGVIIAGWASNSKYAFLGALRASAQMVSYEIAMGFCFLVV 181          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_RUBXD (NADH-quinone oxidoreductase subunit H OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=nuoH PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.120e-27
Identity = 65/158 (41.14%), Postives = 95/158 (60.13%), Query Frame = 3
Query:  153 WVLAPISIYVLAITIGVLVIVWL-EREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            W     S  V+ + + +  ++ L ER++SA IQ R GP    P G+LQ  AD  KL  KEN+ P R +  +F   P    +     +LVIPF   +V+ADLNIG+  + AI+SI  +G++M+GYGS + +S LG LR A Q ISYE+PL L +L +++
Sbjct:   11 WRFLISSATVIFLVLNIAAVLTLAERKVSAYIQLRYGPNRVGPRGLLQPAADVVKLFIKENVSPGRADRWVFLAAPIAMFLPAAAVWLVIPFGPGMVVADLNIGLVYFFAITSIGALGVIMAGYGSRSNFSLLGALRGAGQMISYEVPLILSLLGVAM 168          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_LEGPL (NADH-quinone oxidoreductase subunit H OS=Legionella pneumophila (strain Lens) GN=nuoH PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.120e-27
Identity = 60/159 (37.74%), Postives = 99/159 (62.26%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++W++  I + V+ + I V  + + ER++   IQ RIGP      G+LQ  AD  KL+ KE ++P+R N  LF I P  A++  L+ + VIPF   +VLA++N G+    A+SS+   G+L++G+ SN+KY+  G LR+ AQ++SYEI +   ++ + L
Sbjct:    8 LIWIIIKIIVIVVPLLISVAYLTYAERKVIGYIQVRIGPNRVGLKGLLQPFADLLKLITKEIIVPTRSNKYLFVIAPLFALVPSLVGWAVIPFQEGVVLANINAGVLYLFAMSSLGVYGVLIAGWASNSKYAMFGALRSTAQTVSYEIAMGFALVGVLL 166          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_LEGPC (NADH-quinone oxidoreductase subunit H OS=Legionella pneumophila (strain Corby) GN=nuoH PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.120e-27
Identity = 60/159 (37.74%), Postives = 99/159 (62.26%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++W++  I + V+ + I V  + + ER++   IQ RIGP      G+LQ  AD  KL+ KE ++P+R N  LF I P  A++  L+ + VIPF   +VLA++N G+    A+SS+   G+L++G+ SN+KY+  G LR+ AQ++SYEI +   ++ + L
Sbjct:    8 LIWIIIKILVIVVPLLISVAYLTYAERKVIGYIQVRIGPNRVGLKGLLQPFADLLKLITKEIIVPTRSNKYLFVIAPLFALVPSLVGWAVIPFQEGVVLANINAGVLYLFAMSSLGVYGVLIAGWASNSKYAMFGALRSTAQTVSYEIAMGFALVGVLL 166          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOH_NOVAD5.028e-2838.06NADH-quinone oxidoreductase subunit H OS=Novosphin... [more]
NU1M_CYACA5.028e-2840.94NADH-ubiquinone oxidoreductase chain 1 OS=Cyanidiu... [more]
NUOH_ORITB6.566e-2840.00NADH-quinone oxidoreductase subunit H OS=Orientia ... [more]
NUOH_MESSB8.576e-2837.57NADH-quinone oxidoreductase subunit H OS=Mesorhizo... [more]
NUOH_LEGPH8.576e-2837.74NADH-quinone oxidoreductase subunit H OS=Legionell... [more]
NUOH_HYPNA8.576e-2834.66NADH-quinone oxidoreductase subunit H OS=Hyphomona... [more]
NUOH_ACISJ8.576e-2840.76NADH-quinone oxidoreductase subunit H OS=Acidovora... [more]
NUOH_RUBXD1.120e-2741.14NADH-quinone oxidoreductase subunit H OS=Rubrobact... [more]
NUOH_LEGPL1.120e-2737.74NADH-quinone oxidoreductase subunit H OS=Legionell... [more]
NUOH_LEGPC1.120e-2737.74NADH-quinone oxidoreductase subunit H OS=Legionell... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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