CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_METCA (NADH-quinone oxidoreductase subunit H OS=Methylococcus capsulatus GN=nuoH PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.463e-27
Identity = 60/152 (39.47%), Postives = 96/152 (63.16%), Query Frame = 3
Query:  186 AITIGVLV--------IVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            A+ IG+L+        ++W+ER +    Q R+GP    PLG+ Q +AD  K+ FKE+ +P   +  +F I P+I ++ +LL ++V+PF+  + + D N G+  + A+SS+A    +++GY SNNKYS LG LRAAAQSISYE+ + L  + +
Sbjct:    7 AVVIGILLSTVIVAAWLIWVERRMIGIWQDRLGPNRVGPLGLGQVVADMVKIFFKEDWIPPFADKPVFVIAPAIVMVTMLLGFVVVPFAPGVGVIDFNFGLLYFFALSSLAVYSQVLAGYASNNKYSLLGSLRAAAQSISYEVFMGLAAMGV 158          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_HALHL (NADH-quinone oxidoreductase subunit H OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=nuoH PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.463e-27
Identity = 59/157 (37.58%), Postives = 99/157 (63.06%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            + W  A I   ++ + + V    ++ER +   +Q R GP    P G+LQ +AD  KLLFKE  +P+  + +LF I P++A++  L ++ VIPF   LV+AD+N G+   +A++S+   GL+++G+ SN+KY+ LG LRA+AQ +SYEI +   ++ +
Sbjct:    5 LFWQFAKIWAVLIPLFLAVAYFTYVERRVIGHMQDRRGPNRVGPRGLLQPIADALKLLFKEITIPTYASRTLFLIAPAMAIMPALAAWAVIPFDDGLVVADINAGLLYILAMTSLGVYGLIIAGWASNSKYALLGTLRASAQVVSYEIAMGFALVGV 161          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_ANADE (NADH-quinone oxidoreductase subunit H OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=nuoH PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.463e-27
Identity = 59/157 (37.58%), Postives = 98/157 (62.42%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLV---IVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 611
            LW++A   + ++ ++ G ++    VW E  +SA +Q RIG       G  Q +AD  KLL KE+L+P+  +  LF   P   ++   L ++ +PF  +L+ ADLN+GIF   A++++  +G+L++G+ SN+K++  GG+R+AAQ ISYEIP  L V+
Sbjct:   24 LWLVAMAVLALILVSFGAVISGMTVWWEMRVSARMQSRIGYNRVGAAGFFQWIADAVKLLLKEDLIPADADRLLFRAAPYFVLVGFALVFVALPFGESLIAADLNVGIFYITAVTALVVVGILVAGWSSNSKWALFGGMRSAAQVISYEIPAGLAVM 180          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH2_NITOC (NADH-quinone oxidoreductase subunit H 2 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=nuoH2 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.463e-27
Identity = 65/160 (40.62%), Postives = 101/160 (63.12%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIG-VLVIVWL---EREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            L V  PI   ++AI +  +L++ WL   ER+I   +Q RIGP    P G LQ +AD  KLL KE ++P+  N  LF + P +A+   L  + VIPF  +LVLAD+N  +   +AI S++  G++++G+ SN+KY+FLG +R+AAQ +SYEI +   ++ +
Sbjct:    9 LQVTLPILFKIVAIVLPLILIVAWLTFAERKIIGYMQGRIGPNRVGPRGWLQPIADTVKLLLKEIIIPASANRILFLLAPVLAIAPALAVWAVIPFDAHLVLADINAALLYILAIGSMSVYGIILAGWASNSKYAFLGAMRSAAQVVSYEIAMGFALVGV 168          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_NEIMF (NADH-quinone oxidoreductase subunit H OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=nuoH PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.910e-27
Identity = 62/161 (38.51%), Postives = 104/161 (64.60%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLT---LCVLSIS 620
            ++ V+  I I ++ + + V  + + ER++   +Q R+GP    P G++Q  AD  KLLFKE   P   N +LF IGP +++     ++ VIPF+   VL ++NIG+   + I+S++  G++++G+ SN+KYSFLG +RA+AQSISYEI ++   +CV+ +S
Sbjct:   27 VVSVIVKIVIILIPLILTVAYLTYFERKVIGFMQLRVGPNVTGPWGLIQPFADVFKLLFKEVTRPKLSNKALFYIGPIMSLAPSFAAWAVIPFNEEWVLTNINIGLLYILMITSLSVYGVIIAGWASNSKYSFLGAMRASAQSISYEIAMSAALVCVVMVS 187          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_NEIMB (NADH-quinone oxidoreductase subunit H OS=Neisseria meningitidis serogroup B GN=nuoH PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.910e-27
Identity = 62/161 (38.51%), Postives = 104/161 (64.60%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLT---LCVLSIS 620
            ++ V+  I I ++ + + V  + + ER++   +Q R+GP    P G++Q  AD  KLLFKE   P   N +LF IGP +++     ++ VIPF+   VL ++NIG+   + I+S++  G++++G+ SN+KYSFLG +RA+AQSISYEI ++   +CV+ +S
Sbjct:   25 VVSVIVKIVIILIPLILTVAYLTYFERKVIGFMQLRVGPNVTGPWGLIQPFADVFKLLFKEVTRPKLSNKALFYIGPIMSLAPSFAAWAVIPFNEEWVLTNINIGLLYILMITSLSVYGVIIAGWASNSKYSFLGAMRASAQSISYEIAMSAALVCVVMVS 185          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_NEIG1 (NADH-quinone oxidoreductase subunit H OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=nuoH PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.910e-27
Identity = 62/161 (38.51%), Postives = 104/161 (64.60%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLT---LCVLSIS 620
            ++ V+  I I ++ + + V  + + ER++   +Q R+GP    P G++Q  AD  KLLFKE   P   N +LF IGP +++     ++ VIPF+   VL ++NIG+   + I+S++  G++++G+ SN+KYSFLG +RA+AQSISYEI ++   +CV+ +S
Sbjct:   25 VVSVIVKIVIILIPLILTVAYLTYFERKVIGFMQLRVGPNVTGPRGLIQPFADVFKLLFKEVTRPKLSNKALFYIGPIMSLAPSFAAWAVIPFNEEWVLTNINIGLLYILMITSLSVYGVIIAGWASNSKYSFLGAMRASAQSISYEIAMSAALVCVVMVS 185          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_METFK (NADH-quinone oxidoreductase subunit H OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=nuoH PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.910e-27
Identity = 63/170 (37.06%), Postives = 109/170 (64.12%), Query Frame = 3
Query:  120 LESLQEVYGILWVLAPISIYVLAIT---IGVLVIVWL-EREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +  +Q + G LW +A   + ++AI    +G +  + L ER++   +Q R+GP      G+LQ LADG KLL KE ++PS  + +LF +GP +A+   L ++ V+PF   LVLAD++ G+   +A++S+   G++++G+ SN+KY+FLG +R+AAQ +SYEI +   ++ +
Sbjct:    2 IAEMQTMLGPLWPVAWNLLKIIAIVGPLMGAVAYLTLAERKVIGFMQVRMGPNRVGYRGLLQPLADGVKLLMKEIIIPSAASRTLFLLGPVLAIAPALAAWAVVPFDLTLVLADIDAGLLYILAMTSVGVYGVIIAGWASNSKYAFLGAMRSAAQIVSYEIAMGFALVGV 171          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_LEGPA (NADH-quinone oxidoreductase subunit H OS=Legionella pneumophila (strain Paris) GN=nuoH PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.910e-27
Identity = 59/159 (37.11%), Postives = 99/159 (62.26%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++W++  I + V+ + + V  + + ER++   IQ RIGP      G+LQ  AD  KL+ KE ++P+R N  LF I P  A++  L+ + VIPF   +VLA++N G+    A+SS+   G+L++G+ SN+KY+  G LR+ AQ++SYEI +   ++ + L
Sbjct:    8 LIWIIIKILVIVVPLLLSVAYLTYAERKVIGYIQVRIGPNRVGLKGLLQPFADLLKLITKEIIVPTRSNKYLFVIAPLFALVPSLVGWAVIPFQEGVVLANINAGVLYLFAMSSLGVYGVLIAGWASNSKYAMFGALRSTAQTVSYEIAMGFALVGVLL 166          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH2_SYNFM (NADH-quinone oxidoreductase subunit H 2 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=nuoH2 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.910e-27
Identity = 62/170 (36.47%), Postives = 102/170 (60.00%), Query Frame = 3
Query:  144 GILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYN---------LVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLR 626
            G L ++A ++I +  + +    +VWLER+  A +Q R GP  A   G+LQ +AD  K++ KE+ +P     ++F + P++     LL + VIPF  +         LV+ADLN+G+  + A+SS+   G+ + G+ SN+KYS LGG+R AAQ ISYE+ L L ++ + ++
Sbjct:    7 GFLVLIAKLTIVLAVLLLVAAYLVWLERKFLARLQIRYGPNRAGKFGLLQPIADIVKMVAKEDTVPEGAERTIFMLAPAVVAATALLVFAVIPFGKDVTLWGMKIPLVVADLNVGLLYFFALSSLGVYGVALGGWASNSKYSLLGGIRGAAQMISYELSLGLAIVPVVMQ 176          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOH_METCA1.463e-2739.47NADH-quinone oxidoreductase subunit H OS=Methyloco... [more]
NUOH_HALHL1.463e-2737.58NADH-quinone oxidoreductase subunit H OS=Halorhodo... [more]
NUOH_ANADE1.463e-2737.58NADH-quinone oxidoreductase subunit H OS=Anaeromyx... [more]
NUOH2_NITOC1.463e-2740.63NADH-quinone oxidoreductase subunit H 2 OS=Nitroso... [more]
NUOH_NEIMF1.910e-2738.51NADH-quinone oxidoreductase subunit H OS=Neisseria... [more]
NUOH_NEIMB1.910e-2738.51NADH-quinone oxidoreductase subunit H OS=Neisseria... [more]
NUOH_NEIG11.910e-2738.51NADH-quinone oxidoreductase subunit H OS=Neisseria... [more]
NUOH_METFK1.910e-2737.06NADH-quinone oxidoreductase subunit H OS=Methyloba... [more]
NUOH_LEGPA1.910e-2737.11NADH-quinone oxidoreductase subunit H OS=Legionell... [more]
NUOH2_SYNFM1.910e-2736.47NADH-quinone oxidoreductase subunit H 2 OS=Syntrop... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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