CK939407
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_PELSU (NADH-ubiquinone oxidoreductase chain 1 OS=Pelomedusa subrufa GN=MT-ND1 PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.910e-27 Identity = 65/156 (41.67%), Postives = 105/156 (67.31%), Query Frame = 3 Query: 156 VLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 +L P++ ++L I I V +ER++ + +Q R GP P G+LQ LADG KLLFKE + P+ +++LF + P++A+ L ++L +P ++LV DLN+G+ +++SS+ +L SG+ SN+KY+ +G LRA AQ+ISYEI L+L +LS+ L Sbjct: 7 LLQPLA-FILPILIAVSFFTLVERKVISCMQPRKGPNITGPFGLLQPLADGLKLLFKEPVYPTNSSTTLFILTPTMALSLALSTWLPMPLPFSLV--DLNLGLLFLLSMSSLMVFSILWSGWASNSKYALMGALRAVAQTISYEITLSLILLSMVL 159
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_SPHWW (NADH-quinone oxidoreductase subunit H OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=nuoH PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 2.495e-27 Identity = 59/152 (38.82%), Postives = 95/152 (62.50%), Query Frame = 3 Query: 168 ISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 I + L + + V +I++ +R+I A + R GP P G+LQ+ ADG K+ +E ++P+ N LF + P I L+ + VIPF+ +VLAD+NIG+ +A SSI G++++G+ SN+KY F LRAAAQ +SYE+ + ++S+ L Sbjct: 24 ILVIALPLMLAVAMIIYADRKIWAAMALRRGPNVVGPWGLLQSFADGAKVFLQETIIPAAANKGLFLLAPIITFTVALIVWAVIPFAPGVVLADINIGLLYVLAASSIGVYGVIIAGWASNSKYPFYSALRAAAQMVSYEVSIGFVLISVVL 175
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_RALME (NADH-quinone oxidoreductase subunit H OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=nuoH PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 2.495e-27 Identity = 57/156 (36.54%), Postives = 100/156 (64.10%), Query Frame = 3 Query: 150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 LW+L + V+ + + V ++ ER++ + RIGP PLG+LQ +AD KLL KE + PS+ N ++ + P + ++ + + VIPF +V+AD+N G+ +AISS+ G++++G+ SN+KY+F+G +RAAAQ +SYEI + ++++ Sbjct: 20 LWILIRAVLIVVPVLLCVAYLILWERKLIGWMHVRIGPNRVGPLGLLQPIADVLKLLLKEVMFPSQINRGMYLVAPLMVLMPAVAVWAVIPFQAEVVMADINAGLLYVMAISSVGVYGVILAGWASNSKYAFIGAMRAAAQMVSYEIAMGFALVTV 175
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_NEIMA (NADH-quinone oxidoreductase subunit H OS=Neisseria meningitidis serogroup A GN=nuoH PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 2.495e-27 Identity = 62/161 (38.51%), Postives = 104/161 (64.60%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLT---LCVLSIS 620 ++ V+ I I ++ + + V + + ER++ +Q R+GP P G++Q AD KLLFKE P N +LF IGP +++ ++ VIPF+ VL ++NIG+ + I+S++ G++++G+ SN+KYSFLG +RA+AQSISYEI ++ +CV+ +S Sbjct: 25 VVSVIVKIVIILIPLILTVAYLTYFERKVIGFMQLRVGPNVTGPWGLIQPFADVFKLLFKEVTRPRLSNKALFYIGPIMSLAPSFAAWAVIPFNEEWVLTNINIGLLYILMITSLSVYGVIIAGWASNSKYSFLGAMRASAQSISYEIAMSAALVCVVMVS 185
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_NEIM0 (NADH-quinone oxidoreductase subunit H OS=Neisseria meningitidis serogroup C (strain 053442) GN=nuoH PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 2.495e-27 Identity = 62/161 (38.51%), Postives = 104/161 (64.60%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLT---LCVLSIS 620 ++ V+ I I ++ + + V + + ER++ +Q R+GP P G++Q AD KLLFKE P N +LF IGP +++ ++ VIPF+ VL ++NIG+ + I+S++ G++++G+ SN+KYSFLG +RA+AQSISYEI ++ +CV+ +S Sbjct: 25 VVSVIVKIVIILIPLILTVAYLTYFERKVIGFMQLRVGPNVTGPWGLIQPFADVFKLLFKEVTRPRLSNKALFYIGPIMSLAPSFAAWAVIPFNEEWVLTNINIGLLYILMITSLSVYGVIIAGWASNSKYSFLGAMRASAQSISYEIAMSAALVCVVMVS 185
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH1_RHOS4 (NADH-quinone oxidoreductase subunit H 1 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=nuoH1 PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 2.495e-27 Identity = 65/166 (39.16%), Postives = 103/166 (62.05%), Query Frame = 3 Query: 123 ESLQEVYGILWVLAPISIYVLA-ITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 E + GI+ +A + V+A + I +L +V+ +R+I A +Q R GP G+LQ +AD K +FKE ++P+ + +F + P I+ + +L++ VIPFS VL+D+N+ I A SS+ G++M G+ SN+KY FLG LR+AAQ ISYE+ L L ++ I Sbjct: 3 EFMNSGMGIILTIAAQGLLVIAFVMISLLFLVYGDRKIWAAVQLRRGPNVVGAFGLLQTVADAAKYIFKEVVVPAGVDRPVFFLAPLISFVLAVLAWAVIPFSPGWVLSDINVAILFVFAASSLEVYGVIMGGWASNSKYPFLGSLRSAAQMISYEVSLGLIIIGI 168
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_USTMA (NADH-ubiquinone oxidoreductase chain 1 OS=Ustilago maydis GN=ND1 PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 2.495e-27 Identity = 62/162 (38.27%), Postives = 100/162 (61.73%), Query Frame = 3 Query: 138 VYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 ++ IL+ L I + ++ I + V + +ER++ +Q+RIGP +LQ AD KL+ KE ++PS+ SLF + P + +I LL + VIP L L+D ++GI +A+SSI G+L +G+ +N+KY+FLG LR+ AQ ISYE+ + VL++ L Sbjct: 1 MFSILYNLLEILVVLVPILLSVAFMTVIERKVMGSMQRRIGPNVVGYYALLQPFADALKLVIKEQVIPSQATKSLFFLAPMVTLIFSLLGWGVIPLGPGLALSDFSLGILYSLALSSIGVYGILFAGWSANSKYAFLGSLRSTAQMISYELIYSAAVLAVIL 162
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_CHLPD (NADH-quinone oxidoreductase subunit H OS=Chlorobium phaeobacteroides (strain DSM 266) GN=nuoH PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 3.259e-27 Identity = 67/155 (43.23%), Postives = 99/155 (63.87%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 611 IL + + I + A+T GV + ER+ISA +Q R+GP GILQ LAD KLL KE+++P+ + LF +GP I + L++ V+PFS + A+LN+G+F I I SI +G+L +G+GSNNK+S G +R+ AQ +SYEIP + +L Sbjct: 40 ILAAIPLVFIALYALTYGV----YGERKISAFMQDRLGPMEVGKWGILQTLADILKLLQKEDIVPAAADKFLFVVGPGILFVGSFLAFAVLPFSSAFIGANLNVGLFYAIGIVSIEVVGILAAGWGSNNKWSLYGAVRSVAQIVSYEIPAGIALL 190
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH1_RHOS1 (NADH-quinone oxidoreductase subunit H 1 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=nuoH1 PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 3.259e-27 Identity = 64/159 (40.25%), Postives = 101/159 (63.52%), Query Frame = 3 Query: 144 GILWVLAPISIYVLA-ITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 GI+ +A + V+A + I +L +V+ +R+I A +Q R GP G+LQ +AD K +FKE ++P+ + +F + P I+ + +L++ VIPFS VL+D+N+ I A SS+ G++M G+ SN+KY FLG LR+AAQ ISYE+ L L ++ I Sbjct: 6 GIILTIAAQGLLVIAFVMISLLFLVYGDRKIWAAVQLRRGPNVVGAFGLLQTVADAAKYIFKEVVVPAGVDRPVFFLAPLISFVLAVLAWAVIPFSPGWVLSDINVAILFVFAASSLEVYGVIMGGWASNSKYPFLGSLRSAAQMISYEVSLGLIIIGI 164
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_RALEH (NADH-quinone oxidoreductase subunit H OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=nuoH PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 4.256e-27 Identity = 58/156 (37.18%), Postives = 101/156 (64.74%), Query Frame = 3 Query: 150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 LW+L I V+ + + V ++ ER++ + RIGP PLG+LQ +AD KLL KE ++P++ + ++ I P + ++ + + VIPF +VLAD+N G+ +AISS+ G++++G+ SN+KY+F+G +RAAAQ +SYEI + ++++ Sbjct: 20 LWILIRAVIIVVPLLLCVAYLILWERKLIGWMHVRIGPNRVGPLGLLQPIADVLKLLLKEVMMPTQVSRGMYLIAPLMVLMPAVAVWAVIPFQAEVVLADVNAGLLYVMAISSVGVYGVILAGWASNSKYAFIGAMRAAAQMVSYEIAMGFALVTV 175 The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bpback to top |