CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_PELSU (NADH-ubiquinone oxidoreductase chain 1 OS=Pelomedusa subrufa GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.910e-27
Identity = 65/156 (41.67%), Postives = 105/156 (67.31%), Query Frame = 3
Query:  156 VLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +L P++ ++L I I V     +ER++ + +Q R GP    P G+LQ LADG KLLFKE + P+  +++LF + P++A+   L ++L +P  ++LV  DLN+G+   +++SS+    +L SG+ SN+KY+ +G LRA AQ+ISYEI L+L +LS+ L
Sbjct:    7 LLQPLA-FILPILIAVSFFTLVERKVISCMQPRKGPNITGPFGLLQPLADGLKLLFKEPVYPTNSSTTLFILTPTMALSLALSTWLPMPLPFSLV--DLNLGLLFLLSMSSLMVFSILWSGWASNSKYALMGALRAVAQTISYEITLSLILLSMVL 159          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_SPHWW (NADH-quinone oxidoreductase subunit H OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=nuoH PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.495e-27
Identity = 59/152 (38.82%), Postives = 95/152 (62.50%), Query Frame = 3
Query:  168 ISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            I +  L + + V +I++ +R+I A +  R GP    P G+LQ+ ADG K+  +E ++P+  N  LF + P I     L+ + VIPF+  +VLAD+NIG+   +A SSI   G++++G+ SN+KY F   LRAAAQ +SYE+ +   ++S+ L
Sbjct:   24 ILVIALPLMLAVAMIIYADRKIWAAMALRRGPNVVGPWGLLQSFADGAKVFLQETIIPAAANKGLFLLAPIITFTVALIVWAVIPFAPGVVLADINIGLLYVLAASSIGVYGVIIAGWASNSKYPFYSALRAAAQMVSYEVSIGFVLISVVL 175          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_RALME (NADH-quinone oxidoreductase subunit H OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=nuoH PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.495e-27
Identity = 57/156 (36.54%), Postives = 100/156 (64.10%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            LW+L    + V+ + + V  ++  ER++   +  RIGP    PLG+LQ +AD  KLL KE + PS+ N  ++ + P + ++  +  + VIPF   +V+AD+N G+   +AISS+   G++++G+ SN+KY+F+G +RAAAQ +SYEI +   ++++
Sbjct:   20 LWILIRAVLIVVPVLLCVAYLILWERKLIGWMHVRIGPNRVGPLGLLQPIADVLKLLLKEVMFPSQINRGMYLVAPLMVLMPAVAVWAVIPFQAEVVMADINAGLLYVMAISSVGVYGVILAGWASNSKYAFIGAMRAAAQMVSYEIAMGFALVTV 175          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_NEIMA (NADH-quinone oxidoreductase subunit H OS=Neisseria meningitidis serogroup A GN=nuoH PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.495e-27
Identity = 62/161 (38.51%), Postives = 104/161 (64.60%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLT---LCVLSIS 620
            ++ V+  I I ++ + + V  + + ER++   +Q R+GP    P G++Q  AD  KLLFKE   P   N +LF IGP +++     ++ VIPF+   VL ++NIG+   + I+S++  G++++G+ SN+KYSFLG +RA+AQSISYEI ++   +CV+ +S
Sbjct:   25 VVSVIVKIVIILIPLILTVAYLTYFERKVIGFMQLRVGPNVTGPWGLIQPFADVFKLLFKEVTRPRLSNKALFYIGPIMSLAPSFAAWAVIPFNEEWVLTNINIGLLYILMITSLSVYGVIIAGWASNSKYSFLGAMRASAQSISYEIAMSAALVCVVMVS 185          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_NEIM0 (NADH-quinone oxidoreductase subunit H OS=Neisseria meningitidis serogroup C (strain 053442) GN=nuoH PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.495e-27
Identity = 62/161 (38.51%), Postives = 104/161 (64.60%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLT---LCVLSIS 620
            ++ V+  I I ++ + + V  + + ER++   +Q R+GP    P G++Q  AD  KLLFKE   P   N +LF IGP +++     ++ VIPF+   VL ++NIG+   + I+S++  G++++G+ SN+KYSFLG +RA+AQSISYEI ++   +CV+ +S
Sbjct:   25 VVSVIVKIVIILIPLILTVAYLTYFERKVIGFMQLRVGPNVTGPWGLIQPFADVFKLLFKEVTRPRLSNKALFYIGPIMSLAPSFAAWAVIPFNEEWVLTNINIGLLYILMITSLSVYGVIIAGWASNSKYSFLGAMRASAQSISYEIAMSAALVCVVMVS 185          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH1_RHOS4 (NADH-quinone oxidoreductase subunit H 1 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=nuoH1 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.495e-27
Identity = 65/166 (39.16%), Postives = 103/166 (62.05%), Query Frame = 3
Query:  123 ESLQEVYGILWVLAPISIYVLA-ITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            E +    GI+  +A   + V+A + I +L +V+ +R+I A +Q R GP      G+LQ +AD  K +FKE ++P+  +  +F + P I+ +  +L++ VIPFS   VL+D+N+ I    A SS+   G++M G+ SN+KY FLG LR+AAQ ISYE+ L L ++ I
Sbjct:    3 EFMNSGMGIILTIAAQGLLVIAFVMISLLFLVYGDRKIWAAVQLRRGPNVVGAFGLLQTVADAAKYIFKEVVVPAGVDRPVFFLAPLISFVLAVLAWAVIPFSPGWVLSDINVAILFVFAASSLEVYGVIMGGWASNSKYPFLGSLRSAAQMISYEVSLGLIIIGI 168          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_USTMA (NADH-ubiquinone oxidoreductase chain 1 OS=Ustilago maydis GN=ND1 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.495e-27
Identity = 62/162 (38.27%), Postives = 100/162 (61.73%), Query Frame = 3
Query:  138 VYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++ IL+ L  I + ++ I + V  +  +ER++   +Q+RIGP       +LQ  AD  KL+ KE ++PS+   SLF + P + +I  LL + VIP    L L+D ++GI   +A+SSI   G+L +G+ +N+KY+FLG LR+ AQ ISYE+  +  VL++ L
Sbjct:    1 MFSILYNLLEILVVLVPILLSVAFMTVIERKVMGSMQRRIGPNVVGYYALLQPFADALKLVIKEQVIPSQATKSLFFLAPMVTLIFSLLGWGVIPLGPGLALSDFSLGILYSLALSSIGVYGILFAGWSANSKYAFLGSLRSTAQMISYELIYSAAVLAVIL 162          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_CHLPD (NADH-quinone oxidoreductase subunit H OS=Chlorobium phaeobacteroides (strain DSM 266) GN=nuoH PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.259e-27
Identity = 67/155 (43.23%), Postives = 99/155 (63.87%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 611
            IL  +  + I + A+T GV    + ER+ISA +Q R+GP      GILQ LAD  KLL KE+++P+  +  LF +GP I  +   L++ V+PFS   + A+LN+G+F  I I SI  +G+L +G+GSNNK+S  G +R+ AQ +SYEIP  + +L
Sbjct:   40 ILAAIPLVFIALYALTYGV----YGERKISAFMQDRLGPMEVGKWGILQTLADILKLLQKEDIVPAAADKFLFVVGPGILFVGSFLAFAVLPFSSAFIGANLNVGLFYAIGIVSIEVVGILAAGWGSNNKWSLYGAVRSVAQIVSYEIPAGIALL 190          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH1_RHOS1 (NADH-quinone oxidoreductase subunit H 1 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=nuoH1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.259e-27
Identity = 64/159 (40.25%), Postives = 101/159 (63.52%), Query Frame = 3
Query:  144 GILWVLAPISIYVLA-ITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            GI+  +A   + V+A + I +L +V+ +R+I A +Q R GP      G+LQ +AD  K +FKE ++P+  +  +F + P I+ +  +L++ VIPFS   VL+D+N+ I    A SS+   G++M G+ SN+KY FLG LR+AAQ ISYE+ L L ++ I
Sbjct:    6 GIILTIAAQGLLVIAFVMISLLFLVYGDRKIWAAVQLRRGPNVVGAFGLLQTVADAAKYIFKEVVVPAGVDRPVFFLAPLISFVLAVLAWAVIPFSPGWVLSDINVAILFVFAASSLEVYGVIMGGWASNSKYPFLGSLRSAAQMISYEVSLGLIIIGI 164          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_RALEH (NADH-quinone oxidoreductase subunit H OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=nuoH PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.256e-27
Identity = 58/156 (37.18%), Postives = 101/156 (64.74%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            LW+L    I V+ + + V  ++  ER++   +  RIGP    PLG+LQ +AD  KLL KE ++P++ +  ++ I P + ++  +  + VIPF   +VLAD+N G+   +AISS+   G++++G+ SN+KY+F+G +RAAAQ +SYEI +   ++++
Sbjct:   20 LWILIRAVIIVVPLLLCVAYLILWERKLIGWMHVRIGPNRVGPLGLLQPIADVLKLLLKEVMMPTQVSRGMYLIAPLMVLMPAVAVWAVIPFQAEVVLADVNAGLLYVMAISSVGVYGVILAGWASNSKYAFIGAMRAAAQMVSYEIAMGFALVTV 175          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1M_PELSU1.910e-2741.67NADH-ubiquinone oxidoreductase chain 1 OS=Pelomedu... [more]
NUOH_SPHWW2.495e-2738.82NADH-quinone oxidoreductase subunit H OS=Sphingomo... [more]
NUOH_RALME2.495e-2736.54NADH-quinone oxidoreductase subunit H OS=Ralstonia... [more]
NUOH_NEIMA2.495e-2738.51NADH-quinone oxidoreductase subunit H OS=Neisseria... [more]
NUOH_NEIM02.495e-2738.51NADH-quinone oxidoreductase subunit H OS=Neisseria... [more]
NUOH1_RHOS42.495e-2739.16NADH-quinone oxidoreductase subunit H 1 OS=Rhodoba... [more]
NU1M_USTMA2.495e-2738.27NADH-ubiquinone oxidoreductase chain 1 OS=Ustilago... [more]
NUOH_CHLPD3.259e-2743.23NADH-quinone oxidoreductase subunit H OS=Chlorobiu... [more]
NUOH1_RHOS13.259e-2740.25NADH-quinone oxidoreductase subunit H 1 OS=Rhodoba... [more]
NUOH_RALEH4.256e-2737.18NADH-quinone oxidoreductase subunit H OS=Ralstonia... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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