CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_RALEJ (NADH-quinone oxidoreductase subunit H OS=Ralstonia eutropha (strain JMP134) GN=nuoH PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.559e-27
Identity = 57/156 (36.54%), Postives = 100/156 (64.10%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            LW+L    + V+ + + V  ++  ER++   +  R+GP    PLG+LQ +AD  KLL KE + P+  +  ++ I P + ++  +  + VIPF   +V+AD+N G+   +AISS+   G++++G+ SN+KY+FLGG+RAAAQ +SYEI +   ++++
Sbjct:   20 LWILIRAVLIVVPLLLCVAYLILWERKLIGWMHVRLGPNRVGPLGLLQPIADVLKLLLKEVMTPTHVSKGMYLIAPLMVLMPAVAIWAVIPFQAEVVMADVNAGLLYVMAISSVGVYGVILAGWASNSKYAFLGGMRAAAQMVSYEIAMGFALVTV 175          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_AGRT5 (NADH-quinone oxidoreductase subunit H OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=nuoH PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.559e-27
Identity = 58/164 (35.37%), Postives = 102/164 (62.20%), Query Frame = 3
Query:  138 VYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            V+  L ++    + ++ + + +  ++  +R++ A +Q R GP    P G+ Q+ AD  K + KE ++P+  N ++F + P +AV   L +Y VIPF+   V+A++N+GI    AISS+   G++M G+ SN+KY FLG LR+AAQ +SYE+ + L ++++ L V
Sbjct:    9 VWPALIMVGQSLLLLVCLLVAIAFLLLADRKVWAAVQLRRGPNVVGPFGLFQSFADLLKFILKEPVIPAGANKAVFLLAPLVAVTLALATYAVIPFADGWVVANINVGILYIFAISSLEVYGIIMGGWASNSKYPFLGALRSAAQMVSYEVSIGLVIVTVLLCV 172          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH2_RHOP2 (NADH-quinone oxidoreductase subunit H 2 OS=Rhodopseudomonas palustris (strain HaA2) GN=nuoH2 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.559e-27
Identity = 60/175 (34.29%), Postives = 106/175 (60.57%), Query Frame = 3
Query:  129 LQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPL-------TLCVLSISLRVI 632
            +  ++ ++ V+    + ++ + I +  I+  +R+I A +Q R GP    P G+LQ+ AD  K++ KE ++PS  N  +F + P +  +  L ++ VIP S   V+AD+N+G+   +A+SS++  G++M+G+ SN+KY FL  LR+AAQ +SYE+ +        LCV S++L  I
Sbjct:    6 MTNLWPLIVVIGQSVLLIVVLLISIAYILLADRKIWAAVQIRRGPNVVGPWGLLQSFADLLKMILKEPMIPSGANKGVFLLAPLVTCVLALSAWAVIPVSAGWVIADINVGVLYILAVSSLSVYGIIMAGWSSNSKYPFLAALRSAAQMVSYEVSIGFVIICVLLCVGSLNLTAI 180          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH1_RHOPB (NADH-quinone oxidoreductase subunit H 1 OS=Rhodopseudomonas palustris (strain BisB18) GN=nuoH1 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.559e-27
Identity = 57/164 (34.76%), Postives = 104/164 (63.41%), Query Frame = 3
Query:  138 VYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            ++ +L V+    + ++ + I +  I+  +R+I A +Q R GP    P G+LQ+ AD  K +FKE ++PS  N  +F + P ++ +  L ++ VIP +   V+AD+N+G+   +A+SS++  G++M+G+ SN+KY FL  LR+AAQ +SYE+ +   ++++ L V
Sbjct:    9 LWPLLVVIGQSLLLLILLLITIAYILLADRKIWAAVQIRRGPNVVGPWGLLQSFADLLKFVFKEPMIPSGANKGVFLLAPLVSCVLALAAWAVIPVNAGWVIADINVGVLYILAVSSLSVYGIIMAGWSSNSKYPFLAALRSAAQMVSYEVSIGFVIIAVLLCV 172          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_CUPTR (NADH-quinone oxidoreductase subunit H OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=nuoH PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.260e-27
Identity = 57/156 (36.54%), Postives = 101/156 (64.74%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            LW+L    I V+ + + V  ++  ER++   +  RIGP    PLG+LQ +AD  KLL KE ++P++ +  ++ I P + ++  +  + VIPF   +V+AD+N G+   +AISS+   G++++G+ SN+KY+F+G +RAAAQ +SYEI +   ++++
Sbjct:   20 LWILIRAVIIVVPLLLCVAYLILWERKLIGWMHVRIGPNRVGPLGLLQPIADVLKLLLKEVMMPTQVSRGMYLIAPLMVLMPAVAIWAVIPFQAEVVMADVNAGLLYVMAISSVGVYGVILAGWASNSKYAFIGAMRAAAQMVSYEIAMGFALVTV 175          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH1_SOLUE (NADH-quinone oxidoreductase subunit H 1 OS=Solibacter usitatus (strain Ellin6076) GN=nuoH1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.260e-27
Identity = 67/161 (41.61%), Postives = 99/161 (61.49%), Query Frame = 3
Query:  168 ISIYVLAITIGVLV-----IVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPF---------SYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCV 608
            IS+   A+  GVL+     + W+ER++ A IQ R GP    P G+LQ LAD  KL+ KE+L+P   N  L+   P +A+   LLS  VIPF         +  + + DLNIG+   +A+SS+   G+ ++G+ SNNKYS +GGLR++AQ ISYE+P++L +
Sbjct:   10 ISLVKAAVIFGVLMTTLAYLQWVERKVIAHIQVRPGPYRVGPHGLLQPLADVIKLITKEDLVPPYVNKPLYLAAPFLAITMALLSISVIPFGPVIHIGPVTTAMQMTDLNIGVLFILAVSSMGVYGIALAGWASNNKYSLIGGLRSSAQMISYELPMSLAI 170          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH1_CYTH3 (NADH-quinone oxidoreductase subunit H 1 OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=nuoH1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.260e-27
Identity = 63/158 (39.87%), Postives = 101/158 (63.92%), Query Frame = 3
Query:  171 SIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPF-SY--------NLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +++ +++ I  +   + ER++SA +Q RIGP  A P G+LQ LADG K   KE ++PS  N +LF +GPSIA++   L+  VIP+ SY         L + D+NIG+    A+ SI   G+++ G+ SNNK+S +G +RA++Q ISYEI + L ++++
Sbjct:   17 AVFTISLVIA-MYSTYAERKVSALLQDRIGPNRAGPFGLLQPLADGVKFFMKEEIIPSSANKALFILGPSIAMMTACLTGAVIPWGSYLEIGGDQIALQVTDINIGVLYIFAVVSIGVYGVMIGGWASNNKFSLMGAIRASSQMISYEIAMGLSIIAL 173          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_EHRRW (NADH-quinone oxidoreductase subunit H OS=Ehrlichia ruminantium (strain Welgevonden) GN=nuoH PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.482e-27
Identity = 65/172 (37.79%), Postives = 105/172 (61.05%), Query Frame = 3
Query:  144 GILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPF-SYNL-----------VLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            G+L  L  I I ++++ + V  +V++ER++ A IQ R GP    P G+LQ  AD  KL+ KE ++P + N   F I P I     LL + VIPF SY +           V+A++NIG+   +AISS+   G++++G+ SN+ Y+FLG +R+A+Q ISYE+ + L ++++ L
Sbjct:   17 GVLLFLK-IIIVIISVMVSVAYLVYMERKVIAAIQLRQGPSVVGPFGLLQPFADAIKLIIKEPIIPFKANKLCFLIAPVITFTLALLGWAVIPFGSYIIVDNGQELIVPNVIANINIGVLYILAISSLGVYGIIIAGWSSNSNYAFLGAIRSASQMISYEVSIGLTIVTVLL 187          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_EHRRG (NADH-quinone oxidoreductase subunit H OS=Ehrlichia ruminantium (strain Gardel) GN=nuoH PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.482e-27
Identity = 65/172 (37.79%), Postives = 105/172 (61.05%), Query Frame = 3
Query:  144 GILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPF-SYNL-----------VLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            G+L  L  I I ++++ + V  +V++ER++ A IQ R GP    P G+LQ  AD  KL+ KE ++P + N   F I P I     LL + VIPF SY +           V+A++NIG+   +AISS+   G++++G+ SN+ Y+FLG +R+A+Q ISYE+ + L ++++ L
Sbjct:   17 GVLLFLK-IIIVIISVMVSVAYLVYMERKVIAAIQLRQGPSVVGPFGLLQPFADAIKLIIKEPIIPFKANKLCFLIAPVITFTLALLGWAVIPFGSYIIVDNGQELIVPNVIANINIGVLYILAISSLGVYGIIIAGWSSNSNYAFLGAIRSASQMISYEVSIGLTIVTVLL 187          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH1_RHIME (NADH-quinone oxidoreductase subunit H 1 OS=Rhizobium meliloti GN=nuoH1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.482e-27
Identity = 56/152 (36.84%), Postives = 98/152 (64.47%), Query Frame = 3
Query:  174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            + ++A+ + +  ++  +R+I A +Q R GP    P G+ Q+ AD  K +FKE ++P+  N ++F + P ++V   L ++ VIP + N V+A++N+GI    AISS+   G++M G+ SN+KY FLG LR+AAQ +SYE+ +   ++++ L V
Sbjct:   21 LLLVALLLFIAYVLLADRKIWAAVQLRRGPNVVGPFGLFQSFADLLKFVFKEPVIPAGANKTIFLLAPLVSVTLALAAWAVIPLNANWVIANINVGILFVFAISSLEVYGIIMGGWASNSKYPFLGALRSAAQMVSYEVSIGFVIVTVLLCV 172          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOH_RALEJ5.559e-2736.54NADH-quinone oxidoreductase subunit H OS=Ralstonia... [more]
NUOH_AGRT55.559e-2735.37NADH-quinone oxidoreductase subunit H OS=Agrobacte... [more]
NUOH2_RHOP25.559e-2734.29NADH-quinone oxidoreductase subunit H 2 OS=Rhodops... [more]
NUOH1_RHOPB5.559e-2734.76NADH-quinone oxidoreductase subunit H 1 OS=Rhodops... [more]
NUOH_CUPTR7.260e-2736.54NADH-quinone oxidoreductase subunit H OS=Cupriavid... [more]
NUOH1_SOLUE7.260e-2741.61NADH-quinone oxidoreductase subunit H 1 OS=Solibac... [more]
NUOH1_CYTH37.260e-2739.87NADH-quinone oxidoreductase subunit H 1 OS=Cytopha... [more]
NUOH_EHRRW9.482e-2737.79NADH-quinone oxidoreductase subunit H OS=Ehrlichia... [more]
NUOH_EHRRG9.482e-2737.79NADH-quinone oxidoreductase subunit H OS=Ehrlichia... [more]
NUOH1_RHIME9.482e-2736.84NADH-quinone oxidoreductase subunit H 1 OS=Rhizobi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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