CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_ACOCL (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Acorus calamus GN=ndhA PE=3 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 6.686e-81
Identity = 157/186 (84.41%), Postives = 170/186 (91.40%), Query Frame = 3
Query:   72 MIIATPEVQDINSFSRLESL--QEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MIIAT E+Q INSFSR ESL  +EVYG++W+L PI   +L I IGVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKE+LLPSRG+ SLFS+GPSIAVI+ LLSYLVIPF Y+LVLADL+IG+FLWIAISSIAPIGLLMSGYGSNNKYSF GGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIATTEIQAINSFSRSESLSLKEVYGLIWLLVPIFTLILVIIIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDISLFSLGPSIAVISTLLSYLVIPFGYHLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFSGGLRAAAQSISYEIPLTLCVLSISL 186          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_RANMC (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Ranunculus macranthus GN=ndhA PE=3 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 8.732e-81
Identity = 156/184 (84.78%), Postives = 169/184 (91.85%), Query Frame = 3
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII T ++Q INSF R ESL+EVYG++W+L PI I VL I IGVLVIVWLER+ISAG+QQRIGPEYA PLGILQALADGTKLLFKE+LLPSRG+  LFSIGPSIAVIAILLSYLVIPF Y+LVLADL+IG+FLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLT CVLSISL
Sbjct:    1 MIIDTTKLQAINSFYRSESLKEVYGLVWLLIPIFILVLGIVIGVLVIVWLERQISAGVQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIYLFSIGPSIAVIAILLSYLVIPFGYHLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTPCVLSISL 184          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_NASOF (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nasturtium officinale GN=ndhA PE=3 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 8.732e-81
Identity = 158/184 (85.87%), Postives = 164/184 (89.13%), Query Frame = 3
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII    VQ INSF RLESL+EVYG++W+  PI   VL I  GVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKENL PSRGN  LFSIGPSIAVI+ILLSY VIPFS +LVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIYATAVQTINSFVRLESLKEVYGLIWIFVPIFSLVLGIITGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLRPSRGNPPLFSIGPSIAVISILLSYSVIPFSNHLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_LOBMA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Lobularia maritima GN=ndhA PE=3 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 8.732e-81
Identity = 157/184 (85.33%), Postives = 165/184 (89.67%), Query Frame = 3
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII   EVQ INSF RLESL+EVYG +W+  PI   VL I  GVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKE+L PSRGN+ LFSIGPSIAVI+ILLSY +IPFS +LVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIYATEVQTINSFVRLESLKEVYGFIWIFVPIFSLVLGIITGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLRPSRGNTPLFSIGPSIAVISILLSYSIIPFSNHLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_MORIN (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Morus indica GN=ndhA PE=3 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 1.140e-80
Identity = 154/184 (83.70%), Postives = 163/184 (88.59%), Query Frame = 3
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MI  TPEVQDINSFSR E L+E YGI+W   PI   VL ITIGVLVIVWLEREISAGIQQRIGPEYA PLG+LQALADG KLLFKENL PSRG + LFSIGPSIAVI+IL+SY V+PF  +LVL DLNIG+FLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MISHTPEVQDINSFSRFEFLKETYGIIWAFIPIFTPVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGAKLLFKENLFPSRGETRLFSIGPSIAVISILVSYSVVPFGSHLVLVDLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_EUCGG (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=ndhA PE=3 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 1.140e-80
Identity = 157/185 (84.86%), Postives = 170/185 (91.89%), Query Frame = 3
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLT-LCVLSISL 623
            MII T EVQD+NSFSRLESL+EVYGI+ +  PI   VL ITIGVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKL+FKENL PSRG++ LFSIGPSIAVI+ILLSY VIPFSY+LVL+DLNIG+FLWIAISSIAPIGLLMSGYGSNNKYSFL GLRAAAQSISYEIPLT LCV++ISL
Sbjct:    1 MIIDTTEVQDLNSFSRLESLKEVYGIIGMFLPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLIFKENLFPSRGDTRLFSIGPSIAVISILLSYSVIPFSYHLVLSDLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLSGLRAAAQSISYEIPLTLLCVINISL 185          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_CRUWA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Crucihimalaya wallichii GN=ndhA PE=3 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 1.140e-80
Identity = 157/184 (85.33%), Postives = 165/184 (89.67%), Query Frame = 3
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MI+    VQ INSF RLESL+EVYG++W+  PI   VL I  GVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKENL PSRGN+ LFSIGPSIAVI+ILLSY VIPFS +LVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIMYATAVQTINSFVRLESLKEVYGLIWIFVPIFSLVLGIITGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLRPSRGNTPLFSIGPSIAVISILLSYSVIPFSNHLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_BARVE (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Barbarea verna GN=ndhA PE=3 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 1.140e-80
Identity = 157/184 (85.33%), Postives = 164/184 (89.13%), Query Frame = 3
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII    VQ INSF RLESL+EVYG++W+  PI   +L I  GVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKENL PSRGN  LFSIGPSIAVI+ILLSY VIPFS +LVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIYATAVQTINSFVRLESLKEVYGLIWIFVPIFSLILGIITGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLRPSRGNPPLFSIGPSIAVISILLSYSVIPFSNHLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_PIPCE (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Piper cenocladum GN=ndhA PE=3 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.945e-80
Identity = 154/184 (83.70%), Postives = 169/184 (91.85%), Query Frame = 3
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII T +VQ INSFSR ESL+EV G++W+L PI   VLAITIGVLVIVWLER+ISAGIQQRIGPEYA PLGILQA+ADGTKLLFKE++LPSRG+  LFSIGPSIAVI+I+LSY VIPFSY+LVLADL IG+FLWIA+SSIAPIGLLMSGYGSNNKYSF GGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIDTTKVQAINSFSRSESLKEVIGLIWMLVPILTLVLAITIGVLVIVWLERQISAGIQQRIGPEYAGPLGILQAIADGTKLLFKEDILPSRGDIRLFSIGPSIAVISIILSYSVIPFSYHLVLADLGIGVFLWIAVSSIAPIGLLMSGYGSNNKYSFSGGLRAAAQSISYEIPLTLCVLSISL 184          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_ATRBE (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Atropa belladonna GN=ndhA PE=3 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.945e-80
Identity = 153/184 (83.15%), Postives = 167/184 (90.76%), Query Frame = 3
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII T E++ INSFS+LESL+EVYGI+W+L PI   VL ITIGVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKENL+PS G+  LFSIGPSIAVI+I LSY VIPF  +LVLADL+IG+FLWIAISS+AP+GLLMSGYGSNNKYSFLGGLRAAAQSISYEIPL LCVLSISL
Sbjct:    1 MIIDTTEIETINSFSKLESLKEVYGIIWMLVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLIPSTGDPRLFSIGPSIAVISIFLSYSVIPFGDHLVLADLSIGVFLWIAISSVAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISL 184          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1C_ACOCL6.686e-8184.41NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_RANMC8.732e-8184.78NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_NASOF8.732e-8185.87NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_LOBMA8.732e-8185.33NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_MORIN1.140e-8083.70NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_EUCGG1.140e-8084.86NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_CRUWA1.140e-8085.33NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_BARVE1.140e-8085.33NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_PIPCE1.945e-8083.70NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_ATRBE1.945e-8083.15NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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