CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_DICDI (NADH-ubiquinone oxidoreductase chain 1 OS=Dictyostelium discoideum GN=nad1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.482e-27
Identity = 60/148 (40.54%), Postives = 94/148 (63.51%), Query Frame = 3
Query:  174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            I ++ + IGV     LER++ A +Q+R GP     +G+LQ LADG KL+ KE ++P   +  +++I P +     ++ + VI      V A +N G+   +AISSI   G++++G+ SN+KY+FLGGLR+AAQ +SYE+ L L +LSI
Sbjct:   17 IVIIGLLIGVAFATLLERKVMAAMQKRRGPNVVGFVGLLQPLADGLKLVLKETIIPIVADKLIYAIAPILTFTISIVLWSVIAVGVQSVFASINSGVIFILAISSIGVYGIILAGWASNSKYAFLGGLRSAAQMVSYEVALGLIILSI 164          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_DICCI (NADH-ubiquinone oxidoreductase chain 1 OS=Dictyostelium citrinum GN=nad1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.482e-27
Identity = 60/148 (40.54%), Postives = 94/148 (63.51%), Query Frame = 3
Query:  174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            I ++ + IGV     LER++ A +Q+R GP     +G+LQ LADG KL+ KE ++P   +  +++I P +     ++ + VI      V A +N G+   +AISSI   G++++G+ SN+KY+FLGGLR+AAQ +SYE+ L L +LSI
Sbjct:   23 IVIIGLLIGVAFATLLERKVMAAMQKRRGPNVVGFVGLLQPLADGLKLVLKETIIPIVADKIIYAIAPILTFTISIVLWSVIAVGVQSVFASINSGVIFILAISSIGVYGIILAGWASNSKYAFLGGLRSAAQMVSYEVALGLIILSI 170          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_ACACA (NADH-ubiquinone oxidoreductase chain 1 OS=Acanthamoeba castellanii GN=ND1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.482e-27
Identity = 61/151 (40.40%), Postives = 100/151 (66.23%), Query Frame = 3
Query:  168 ISIY-VLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +S+Y +L + + V  +   ER++ A IQ+R GP +   LGILQ LAD  KL+ KEN +P   +S LF  GP I +I  L ++ VIPF+   V++D+NIGI     +SS+  + ++++G+ SN++Y+FLG LR+ AQ I+YE+ + + +++I
Sbjct:   11 LSLYLILNVILTVAFLTLFERKVLASIQKRKGPNWTGFLGILQPLADALKLILKENPVPQNASSVLFFGGPLILLILSLSAWFVIPFNNETVVSDINIGILYVFMVSSLNTLNIIVAGWSSNSRYAFLGALRSIAQVIAYEVVIGIIIINI 161          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_POLSJ (NADH-quinone oxidoreductase subunit H OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=nuoH PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.238e-26
Identity = 58/160 (36.25%), Postives = 99/160 (61.88%), Query Frame = 3
Query:  138 VYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            V+ +LW L  I   +L +   V  +   ER+     Q R GP    P G+LQ +AD  KLL KE ++P+  +  LF +GP + ++  L ++ VIPF  ++ L+++N G+   +AI+S+   G++++G+ SN+KY+FLG +RA+AQ +SYEI +  C++ +
Sbjct:   21 VWPVLWALIKIVCVLLPLMGCVAYLTLWERKAIGFTQIRFGPNRVGPFGLLQPIADALKLLTKEIIMPTAASKGLFVLGPIMTIMPALAAWAVIPFGPDIALSNINAGLLFLMAITSMEVYGVIIAGWASNSKYAFLGAMRASAQMVSYEIAMGFCLVVV 180          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_EHRCR (NADH-quinone oxidoreductase subunit H OS=Ehrlichia chaffeensis (strain Arkansas) GN=nuoH PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.238e-26
Identity = 58/160 (36.25%), Postives = 99/160 (61.88%), Query Frame = 3
Query:  180 VLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLV------------LADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++++ I V  +V++ER++ A IQ R GP    P G+LQ  AD  KL+ KE+++P + N   F I P I     LL + VIPF  +++            +A++NIG+   +AISS+   G++++G+ SN+ Y+FLG +R+A+Q ISYE+ + L ++++ L
Sbjct:   28 IISVMISVAYLVYMERKVIAAIQLRQGPNVVGPFGLLQPFADAVKLIIKEHIIPFKSNKICFLIAPIITFTLALLGWAVIPFGADVIVNDGYEVIIPNAIANINIGVLYILAISSLGVYGIIIAGWSSNSNYAFLGAIRSASQMISYEVSIGLTIVTVLL 187          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_EHRCJ (NADH-quinone oxidoreductase subunit H OS=Ehrlichia canis (strain Jake) GN=nuoH PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.238e-26
Identity = 59/168 (35.12%), Postives = 101/168 (60.12%), Query Frame = 3
Query:  156 VLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNL------------VLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +L  I   ++++ + V  +V++ER++   IQ R GP    P G+LQ  AD  KL+ KE+++P + N   F I P I     LL + VIPF  ++            V+A++NIG+   +AISS+   G++++G+ SN+ Y+FLG +R+A+Q ISYE+ + L ++++ L
Sbjct:   21 LLIKIMAVIISVMVSVAYLVYMERKVIGAIQLRQGPNVVGPFGLLQPFADAVKLIIKEHIIPFKSNKICFLIAPIITFTLALLGWAVIPFGADVIVNNGHEVIIPNVIANINIGVLYILAISSLGVYGIIIAGWSSNSNYAFLGAIRSASQMISYEVSIGLTIVTVLL 188          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH2_ACIBL (NADH-quinone oxidoreductase subunit H 2 OS=Acidobacteria bacterium (strain Ellin345) GN=nuoH2 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.238e-26
Identity = 63/178 (35.39%), Postives = 97/178 (54.49%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVL-------------------ADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +L  L  + + +  +   V   VWLER++   +Q R GP    P G+LQ LADG K + KE+LLP   N  L+ + P +AV   LLS  ++PF   L +                    D+NIG+ + + ++SI   G+ ++G+ SN+KYS LG LRA+AQ +SYE+ L L ++ + L
Sbjct:    8 LLVALIKVVLVIFVLLTAVAYTVWLERKVVGRMQNRWGPTRVGPFGLLQPLADGLKFILKEDLLPPHVNKPLYILAPMLAVAMALLSISIVPFGGTLTIGHITTPLQITGIMGANGQPVDINIGLLIILGVTSIGVYGIALAGWSSNSKYSLLGSLRASAQMVSYEVSLGLSLVGVLL 185          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_ROSDO (NADH-quinone oxidoreductase subunit H OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=nuoH PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.617e-26
Identity = 58/154 (37.66%), Postives = 97/154 (62.99%), Query Frame = 3
Query:  156 VLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +LA +   +  + + +L +V+ +R+I A +Q R GP      G+LQ +AD  K + KE ++P+  + ++F + P  + +  LL++ VIPF+   VL+D+N+ I    AISS+   G++M G+ SN+KY FLG LR+AAQ ISYE+ L L ++ +
Sbjct:   15 ILAQVLAVIGFVMVSLLFLVYGDRKIWAAVQMRRGPNVVGTFGLLQTVADALKYVVKEVVVPAGADKTVFMLAPMTSFVLALLAWAVIPFNDGWVLSDINVAILFVFAISSLEVYGVIMGGWASNSKYPFLGSLRSAAQMISYEVSLGLIIIGV 168          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_DESPS (NADH-quinone oxidoreductase subunit H OS=Desulfotalea psychrophila GN=nuoH PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.617e-26
Identity = 57/156 (36.54%), Postives = 99/156 (63.46%), Query Frame = 3
Query:  156 VLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            VLA   I +  + +    +VW ER  +A IQ+R+GP    P G+LQ   DG KL+ K+ ++P   +  LF + P +A+   L+S++ IPFS N+V  +++IG+ + +A +S A + +L++G+ S NKYS +  +RA +Q+I+YEIP+ +  +++ L
Sbjct:    8 VLAAALIALAFVAVNAAYLVWAERRGAAFIQRRLGPVENGPWGLLQPPVDGIKLMTKQLVIPGGVDKILFMVAPVLAMFPALMSFVTIPFSENIVAHNMDIGLLVILAFASFAGLAILLAGWSSRNKYSMMAAIRAVSQTIAYEIPMLITAITVVL 163          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_CAUCR (NADH-quinone oxidoreductase subunit H OS=Caulobacter crescentus GN=nuoH PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.617e-26
Identity = 58/159 (36.48%), Postives = 100/159 (62.89%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++WVL  ++  +LA           +R+I AG+Q R GP    P G+LQ+ AD  K + KE ++P+  +  +F + P I++I   + + V+PF+   V+++LN+GI   +A+SS+   G++M G+ SN+KY FLG LR+AAQ +SYE+ + L ++++ L
Sbjct:   24 VIWVLLSLAFLLLA-----------DRKIWAGVQMRKGPNVVGPFGLLQSFADFFKFVLKEIVIPAGADKVVFILAPLISLILAFVGWAVVPFAPGWVVSNLNVGILYLLAMSSLGVYGIIMGGWASNSKYPFLGALRSAAQMVSYEVSIGLIIITVIL 171          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1M_DICDI9.482e-2740.54NADH-ubiquinone oxidoreductase chain 1 OS=Dictyost... [more]
NU1M_DICCI9.482e-2740.54NADH-ubiquinone oxidoreductase chain 1 OS=Dictyost... [more]
NU1M_ACACA9.482e-2740.40NADH-ubiquinone oxidoreductase chain 1 OS=Acantham... [more]
NUOH_POLSJ1.238e-2636.25NADH-quinone oxidoreductase subunit H OS=Polaromon... [more]
NUOH_EHRCR1.238e-2636.25NADH-quinone oxidoreductase subunit H OS=Ehrlichia... [more]
NUOH_EHRCJ1.238e-2635.12NADH-quinone oxidoreductase subunit H OS=Ehrlichia... [more]
NUOH2_ACIBL1.238e-2635.39NADH-quinone oxidoreductase subunit H 2 OS=Acidoba... [more]
NUOH_ROSDO1.617e-2637.66NADH-quinone oxidoreductase subunit H OS=Roseobact... [more]
NUOH_DESPS1.617e-2636.54NADH-quinone oxidoreductase subunit H OS=Desulfota... [more]
NUOH_CAUCR1.617e-2636.48NADH-quinone oxidoreductase subunit H OS=Caulobact... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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