CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BACCN (NADH-quinone oxidoreductase subunit H OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=nuoH PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.617e-26
Identity = 65/146 (44.52%), Postives = 89/146 (60.96%), Query Frame = 3
Query:  189 ITIGVLVIVWLEREISAGIQQRIGP-EYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +T G+L     ER++   +Q R+GP +     G+LQ +AD  KLL KE+ +P   +  LF + P IA     +   VIPF+     AD+ +G+  +IAIS I  IG+L  G+ SNNKYS LGG+RAAAQ ISYEIPL + V+ I L
Sbjct:   33 VTYGILA----ERKVMGFMQGRVGPNQVGGRFGLLQTVADVLKLLLKEDSIPKAADKPLFILAPIIAFAPAFMVLAVIPFTSQFQFADIGVGLLYYIAISGITTIGVLTGGWASNNKYSLLGGMRAAAQMISYEIPLVMSVIGIVL 174          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_RHOFD (NADH-quinone oxidoreductase subunit H OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=nuoH PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.112e-26
Identity = 57/157 (36.31%), Postives = 97/157 (61.78%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            ++W L  +++ ++ +   V      ER + A  Q R+GP    P G+LQ +AD  KL+ KE L P+     LF +GP + V+  + ++ VIPF  ++ LA++N G+   +AI+S+   G+++SG+ SN+KY FLG LRA++Q +SYEI +  C++ +
Sbjct:   25 VVWALIKVTLVLMIVMGAVTYTTLWERRLLAWAQIRMGPNRVGPWGLLQPIADAMKLMTKEVLRPAAAEKFLFYLGPVMTVMPAMAAWAVIPFGPDIALANINAGLLFLMAITSMEVYGVIISGWSSNSKYPFLGALRASSQMVSYEIAMGFCLVVV 181          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_SILPO (NADH-quinone oxidoreductase subunit H OS=Silicibacter pomeroyi GN=nuoH PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.759e-26
Identity = 58/158 (36.71%), Postives = 100/158 (63.29%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            L +LA +   V  + I +L +V+ +R+I A +Q R GP      G+LQ++AD  K + KE ++P+  + ++F + P  + +  ++++ VIPF+   VL+D+N+ I    A+SS+   G++M G+ SN+KY FLG LR+AAQ ISYE+ + L ++ + L
Sbjct:   13 LIILAQVLAVVAFVMISLLFLVYGDRKIWAAVQMRRGPNVVGVYGLLQSVADALKYVVKEVVIPAGADRTVFILAPMTSFVLAMIAWAVIPFNDGWVLSDINVAILYVFAVSSLEVYGVIMGGWASNSKYPFLGSLRSAAQMISYEVSIGLIIIGVIL 170          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_RHILO (NADH-quinone oxidoreductase subunit H OS=Rhizobium loti GN=nuoH PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.759e-26
Identity = 58/158 (36.71%), Postives = 97/158 (61.39%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            L +L    + ++ + I V  I++ +R+I A +Q R GP    P G LQA AD  K +FKE ++PS  N  +F + P ++ +  + ++ VIP +    +A++N+GI    AISS+   G++M G+ SN+KY FLG LR+AAQ +SYE+ +   ++++ L
Sbjct:   13 LLILLKSVVLIVVLLIFVAYILYADRKIWAAVQLRRGPNVVGPWGTLQAFADLLKFVFKEPVIPSGANKGVFLLAPLVSAVLAISAWAVIPVNQGWAIANVNVGILYVFAISSLEVYGVIMGGWASNSKYPFLGALRSAAQMVSYEVSIGFVIVTVLL 170          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_NITWN (NADH-quinone oxidoreductase subunit H OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=nuoH PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.759e-26
Identity = 56/162 (34.57%), Postives = 101/162 (62.35%), Query Frame = 3
Query:  138 VYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++ ++ ++A   + ++ + I +  I+  +R+I A +Q R GP    P G+ Q+ AD  K + KE ++PS  N  +F + P ++ +  L ++ VIP + N V+AD+N+GI    AISS++  G++M G+ SN+KY FL  LR+AAQ +SYE+ +   ++++ L
Sbjct:   14 LWPLIVMVAQSVLLLVVLLIAIAYILLADRKIWAAVQIRRGPNVVGPWGLFQSFADLLKFVLKEPIIPSGANKGVFLLAPLVSCVLALAAWAVIPVNLNWVIADINVGILYIFAISSLSIYGIIMGGWASNSKYPFLAALRSAAQMVSYEVSIGFVIITVLL 175          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_JANMA (NADH-quinone oxidoreductase subunit H OS=Janthinobacterium sp. (strain Marseille) GN=nuoH PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.603e-26
Identity = 60/157 (38.22%), Postives = 97/157 (61.78%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            ++W L  I   V  +   V  +   ER++   +  R GP    P G+LQ +ADG KLL KE ++P++ + +LF I P + ++  L ++ VIPF    VLAD+N G+   +AI+S+   G++++G+ SN+KY+FLG +RA+AQ ISYEI +   ++ I
Sbjct:   22 LVWNLVKIIAVVAPLMGAVAYLTLWERKVIGWMHVRHGPNRTGPAGLLQPIADGVKLLLKEIVVPAKSSKALFVIAPIMTIMPALAAWAVIPFGPETVLADVNAGLLFVMAITSLEVYGVIVAGWASNSKYAFLGAMRASAQMISYEIAMGFVLVII 178          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_PARUW (NADH-quinone oxidoreductase subunit H OS=Protochlamydia amoebophila (strain UWE25) GN=nuoH PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.706e-26
Identity = 60/168 (35.71%), Postives = 100/168 (59.52%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFS---------YNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++ +L   ++ +L +      + +LER + A +Q R+GP    P G+ Q LADG KLL KE   P+   + ++ + P I++   L  +++IPF            L +AD+N+G+   +A SS+A  G++++G+ SNN+YS +GGLR  AQ ISYEIP+ L +L++ L
Sbjct:    5 LIIILIKSAVVILLLFTAAAYMTFLERIVMARLQLRMGPVRVGPFGLFQPLADGIKLLCKERFQPANVETFVYWLAPGISLFTALFIFVLIPFGGVVEIAGRLIYLQIADINVGVVFLLAFSSLAVYGVVLAGWASNNRYSLIGGLRGTAQMISYEIPMGLSLLTVVL 172          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_COXBU (NADH-quinone oxidoreductase subunit H OS=Coxiella burnetii GN=nuoH PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.706e-26
Identity = 55/159 (34.59%), Postives = 100/159 (62.89%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++W++  I + ++ + + V  I   ER++   +Q R+GP      G+ Q +AD  KLL KE ++P+  +  L+ I P ++++  L ++ VIPF+   VLA++N G+    A++S+   G+L++G+ SN+KY+F G LR+AAQ +SYEIP+   ++ + L
Sbjct:    8 LIWIIIKIVLILVPLLVAVAFITLAERKVIGYMQSRVGPNRVGFRGLAQPIADIFKLLLKEVIIPTASSRYLYLIAPILSLVPALAAWAVIPFAQGWVLANVNAGLLFLFAMTSLGVYGILVAGWASNSKYAFFGALRSAAQVVSYEIPMGFALVGVLL 166          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_COXBR (NADH-quinone oxidoreductase subunit H OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=nuoH PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.706e-26
Identity = 55/159 (34.59%), Postives = 100/159 (62.89%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++W++  I + ++ + + V  I   ER++   +Q R+GP      G+ Q +AD  KLL KE ++P+  +  L+ I P ++++  L ++ VIPF+   VLA++N G+    A++S+   G+L++G+ SN+KY+F G LR+AAQ +SYEIP+   ++ + L
Sbjct:    8 LIWIIIKIVLILVPLLVAVAFITLAERKVIGYMQSRVGPNRVGFRGLAQPIADIFKLLLKEVIIPTASSRYLYLIAPILSLVPALAAWAVIPFAQGWVLANVNAGLLFLFAMTSLGVYGILVAGWASNSKYAFFGALRSAAQVVSYEIPMGFALVGVLL 166          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_COXBN (NADH-quinone oxidoreductase subunit H OS=Coxiella burnetii (strain Dugway 5J108-111) GN=nuoH PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.706e-26
Identity = 55/159 (34.59%), Postives = 100/159 (62.89%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++W++  I + ++ + + V  I   ER++   +Q R+GP      G+ Q +AD  KLL KE ++P+  +  L+ I P ++++  L ++ VIPF+   VLA++N G+    A++S+   G+L++G+ SN+KY+F G LR+AAQ +SYEIP+   ++ + L
Sbjct:    8 LIWIIIKIVLILVPLLVAVAFITLAERKVIGYMQSRVGPNRVGFRGLAQPIADIFKLLLKEVIIPTASSRYLYLIAPILSLVPALAAWAVIPFAQGWVLANVNAGLLFLFAMTSLGVYGILVAGWASNSKYAFFGALRSAAQVVSYEIPMGFALVGVLL 166          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOH_BACCN1.617e-2644.52NADH-quinone oxidoreductase subunit H OS=Bacillus ... [more]
NUOH_RHOFD2.112e-2636.31NADH-quinone oxidoreductase subunit H OS=Rhodofera... [more]
NUOH_SILPO2.759e-2636.71NADH-quinone oxidoreductase subunit H OS=Silicibac... [more]
NUOH_RHILO2.759e-2636.71NADH-quinone oxidoreductase subunit H OS=Rhizobium... [more]
NUOH_NITWN2.759e-2634.57NADH-quinone oxidoreductase subunit H OS=Nitrobact... [more]
NUOH_JANMA3.603e-2638.22NADH-quinone oxidoreductase subunit H OS=Janthinob... [more]
NUOH_PARUW4.706e-2635.71NADH-quinone oxidoreductase subunit H OS=Protochla... [more]
NUOH_COXBU4.706e-2634.59NADH-quinone oxidoreductase subunit H OS=Coxiella ... [more]
NUOH_COXBR4.706e-2634.59NADH-quinone oxidoreductase subunit H OS=Coxiella ... [more]
NUOH_COXBN4.706e-2634.59NADH-quinone oxidoreductase subunit H OS=Coxiella ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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