CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_COXB1 (NADH-quinone oxidoreductase subunit H OS=Coxiella burnetii (strain CbuK_Q154) GN=nuoH PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.706e-26
Identity = 55/159 (34.59%), Postives = 100/159 (62.89%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++W++  I + ++ + + V  I   ER++   +Q R+GP      G+ Q +AD  KLL KE ++P+  +  L+ I P ++++  L ++ VIPF+   VLA++N G+    A++S+   G+L++G+ SN+KY+F G LR+AAQ +SYEIP+   ++ + L
Sbjct:    8 LIWIIIKIVLILVPLLVAVAFITLAERKVIGYMQSRVGPNRVGFRGLAQPIADIFKLLLKEVIIPTASSRYLYLIAPILSLVPALAAWAVIPFAQGWVLANVNAGLLFLFAMTSLGVYGILVAGWASNSKYAFFGALRSAAQVVSYEIPMGFALVGVLL 166          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_CHRVO (NADH-quinone oxidoreductase subunit H OS=Chromobacterium violaceum GN=nuoH PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.706e-26
Identity = 61/171 (35.67%), Postives = 103/171 (60.23%), Query Frame = 3
Query:  120 LESLQEVYG-----ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +E LQ + G     ++W L  I   VL +   V  +   ER++   +Q RIGP    P G+LQ +AD  KLL KE +LP+  +  LF + P +++   L ++ VIPF+  LVLA++N  +   +A++S+   G++++G+  N+KYSFLG +R+AAQ +SYE+ +   ++ +
Sbjct:    1 MEFLQGILGTDAGLLVWTLLKIIAIVLPMLGCVAYLTLAERKVIGYMQIRIGPNRVGPFGLLQPIADAVKLLMKEIILPTNSSKGLFLLAPVLSIGPALAAWAVIPFTDKLVLANVNASLLYILALTSMGVYGVIIAGWAGNSKYSFLGAMRSAAQIVSYELAMGFALVGV 171          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_CHLP8 (NADH-quinone oxidoreductase subunit H OS=Chlorobaculum parvum (strain NCIB 8327) GN=nuoH PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.706e-26
Identity = 63/159 (39.62%), Postives = 100/159 (62.89%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            I+  +  + I + A+T GV    + ER+ISA +Q R+GP      G+LQ LAD  KLL KE+++P   +  LF IGP I  +   L++ V+PF    + ADLN+G+F  + I +I  +G+L +G+GSNNK++  G +R+ AQ +SYEIP ++ +L  ++
Sbjct:   28 IIAAIPLVFIALYALTYGV----YGERKISAFMQDRLGPMEVGIWGLLQTLADILKLLQKEDIVPKLADKFLFVIGPGILFVGSFLAFAVLPFGPAFIGADLNVGLFYAVGIVAIEVVGILAAGWGSNNKWALYGAVRSVAQIVSYEIPASIALLCAAM 182          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_CHLCH (NADH-quinone oxidoreductase subunit H OS=Chlorobium chlorochromatii (strain CaD3) GN=nuoH PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.706e-26
Identity = 63/155 (40.65%), Postives = 98/155 (63.23%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 611
            I+  +  + I + A+T GV    + ER+ISA +Q R+GP      GILQ LAD  KLL KE+++P   +  LF IGP +  +   L++ V+PFS   + A LN+G+F  + I ++  +G+L +G+GSNNK+S  G +R+ AQ +SYEIP ++ +L
Sbjct:   40 IIAAIPLVFIALYALTYGV----YGERKISAFMQDRLGPMEVGKWGILQTLADILKLLQKEDIVPLSADKFLFVIGPGVLFVGSFLAFAVLPFSPAFIGASLNVGLFYAVGIVALEVVGILAAGWGSNNKWSLYGAVRSVAQIVSYEIPASIALL 190          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BRUO2 (NADH-quinone oxidoreductase subunit H OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=nuoH PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.706e-26
Identity = 56/152 (36.84%), Postives = 96/152 (63.16%), Query Frame = 3
Query:  174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            + ++ + I V  +++ +R+I A +Q R GP    P G+ QA AD  K +FKE ++PS  N  +F + P I+ +  + ++ VIP + +  +A++N+GI    AISS+   G++M G+ SN+KY FLG LR+AAQ +SYE+ +   ++++ L V
Sbjct:   21 VLLVVLLIVVAYLLYADRKIWAAVQLRRGPNVVGPWGLFQAFADLLKFVFKEPIIPSGANKGVFLLAPFISAVLAMATWAVIPVNESWAVANINVGILYIFAISSLEVYGVIMGGWASNSKYPFLGALRSAAQMVSYEVSIGFVIVTVLLTV 172          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BACHK (NADH-quinone oxidoreductase subunit H OS=Bacillus thuringiensis subsp. konkukian GN=nuoH PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.706e-26
Identity = 64/146 (43.84%), Postives = 89/146 (60.96%), Query Frame = 3
Query:  189 ITIGVLVIVWLEREISAGIQQRIGP-EYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +T G+L     ER++   +Q RIGP +     G+LQ +AD  KLL KE+ +P   +  LF + P IA     +   VIPF+     AD+ +G+  +IA+S I  IG++  G+ SNNKYS LGG+RAAAQ ISYEIPL + V+ I L
Sbjct:   33 VTYGILA----ERKVMGFMQGRIGPNQVGGRFGLLQTVADVLKLLLKEDSIPKAADKPLFILAPVIAFAPAFMVLAVIPFTDKFQFADIGVGLLYYIAVSGITTIGVVTGGWASNNKYSLLGGMRAAAQMISYEIPLVMSVIGIVL 174          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BACCZ (NADH-quinone oxidoreductase subunit H OS=Bacillus cereus (strain ZK / E33L) GN=nuoH PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.706e-26
Identity = 64/146 (43.84%), Postives = 89/146 (60.96%), Query Frame = 3
Query:  189 ITIGVLVIVWLEREISAGIQQRIGP-EYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +T G+L     ER++   +Q RIGP +     G+LQ +AD  KLL KE+ +P   +  LF + P IA     +   VIPF+     AD+ +G+  +IA+S I  IG++  G+ SNNKYS LGG+RAAAQ ISYEIPL + V+ I L
Sbjct:   33 VTYGILA----ERKVMGFMQGRIGPNQVGGRFGLLQTVADVLKLLLKEDSIPKAADKPLFILAPVIAFAPAFMVLAVIPFTDKFQFADIGVGLLYYIAVSGITTIGVVTGGWASNNKYSLLGGMRAAAQMISYEIPLVMSVIGIVL 174          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BACCR (NADH-quinone oxidoreductase subunit H OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=nuoH PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.706e-26
Identity = 64/146 (43.84%), Postives = 89/146 (60.96%), Query Frame = 3
Query:  189 ITIGVLVIVWLEREISAGIQQRIGP-EYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +T G+L     ER++   +Q RIGP +     G+LQ +AD  KLL KE+ +P   +  LF + P IA     +   VIPF+     AD+ +G+  +IA+S I  IG++  G+ SNNKYS LGG+RAAAQ ISYEIPL + V+ I L
Sbjct:   33 VTYGILA----ERKVMGFMQGRIGPNQVGGRFGLLQTVADVLKLLLKEDSIPKAADKPLFILAPVIAFAPAFMVLAVIPFTDKFQFADIGVGLLYYIAVSGITTIGVVTGGWASNNKYSLLGGMRAAAQMISYEIPLVMSVIGIVL 174          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BACCQ (NADH-quinone oxidoreductase subunit H OS=Bacillus cereus (strain Q1) GN=nuoH PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.706e-26
Identity = 64/146 (43.84%), Postives = 89/146 (60.96%), Query Frame = 3
Query:  189 ITIGVLVIVWLEREISAGIQQRIGP-EYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +T G+L     ER++   +Q RIGP +     G+LQ +AD  KLL KE+ +P   +  LF + P IA     +   VIPF+     AD+ +G+  +IA+S I  IG++  G+ SNNKYS LGG+RAAAQ ISYEIPL + V+ I L
Sbjct:   33 VTYGILA----ERKVMGFMQGRIGPNQVGGRFGLLQTVADVLKLLLKEDSIPKAADKPLFILAPVIAFAPAFMVLAVIPFTDKFQFADIGVGLLYYIAVSGITTIGVVTGGWASNNKYSLLGGMRAAAQMISYEIPLVMSVIGIVL 174          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BACC7 (NADH-quinone oxidoreductase subunit H OS=Bacillus cereus (strain AH187) GN=nuoH PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.706e-26
Identity = 64/146 (43.84%), Postives = 89/146 (60.96%), Query Frame = 3
Query:  189 ITIGVLVIVWLEREISAGIQQRIGP-EYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +T G+L     ER++   +Q RIGP +     G+LQ +AD  KLL KE+ +P   +  LF + P IA     +   VIPF+     AD+ +G+  +IA+S I  IG++  G+ SNNKYS LGG+RAAAQ ISYEIPL + V+ I L
Sbjct:   33 VTYGILA----ERKVMGFMQGRIGPNQVGGRFGLLQTVADVLKLLLKEDSIPKAADKPLFILAPVIAFAPAFMVLAVIPFTDKFQFADIGVGLLYYIAVSGITTIGVVTGGWASNNKYSLLGGMRAAAQMISYEIPLVMSVIGIVL 174          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOH_COXB14.706e-2634.59NADH-quinone oxidoreductase subunit H OS=Coxiella ... [more]
NUOH_CHRVO4.706e-2635.67NADH-quinone oxidoreductase subunit H OS=Chromobac... [more]
NUOH_CHLP84.706e-2639.62NADH-quinone oxidoreductase subunit H OS=Chlorobac... [more]
NUOH_CHLCH4.706e-2640.65NADH-quinone oxidoreductase subunit H OS=Chlorobiu... [more]
NUOH_BRUO24.706e-2636.84NADH-quinone oxidoreductase subunit H OS=Brucella ... [more]
NUOH_BACHK4.706e-2643.84NADH-quinone oxidoreductase subunit H OS=Bacillus ... [more]
NUOH_BACCZ4.706e-2643.84NADH-quinone oxidoreductase subunit H OS=Bacillus ... [more]
NUOH_BACCR4.706e-2643.84NADH-quinone oxidoreductase subunit H OS=Bacillus ... [more]
NUOH_BACCQ4.706e-2643.84NADH-quinone oxidoreductase subunit H OS=Bacillus ... [more]
NUOH_BACC74.706e-2643.84NADH-quinone oxidoreductase subunit H OS=Bacillus ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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