CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BACC4 (NADH-quinone oxidoreductase subunit H OS=Bacillus cereus (strain B4264) GN=nuoH PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.706e-26
Identity = 64/146 (43.84%), Postives = 89/146 (60.96%), Query Frame = 3 
Query:  189 ITIGVLVIVWLEREISAGIQQRIGP-EYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +T G+L     ER++   +Q RIGP +     G+LQ +AD  KLL KE+ +P   +  LF + P IA     +   VIPF+     AD+ +G+  +IA+S I  IG++  G+ SNNKYS LGG+RAAAQ ISYEIPL + V+ I L
Sbjct:   33 VTYGILA----ERKVMGFMQGRIGPNQVGGRFGLLQTVADVLKLLLKEDSIPKAADKPLFILAPVIAFAPAFMVLAVIPFTDKFQFADIGVGLLYYIAVSGITTIGVVTGGWASNNKYSLLGGMRAAAQMISYEIPLVMSVIGIVL 174
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BACC3 (NADH-quinone oxidoreductase subunit H OS=Bacillus cereus (strain 03BB102) GN=nuoH PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.706e-26
Identity = 64/146 (43.84%), Postives = 89/146 (60.96%), Query Frame = 3 
Query:  189 ITIGVLVIVWLEREISAGIQQRIGP-EYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +T G+L     ER++   +Q RIGP +     G+LQ +AD  KLL KE+ +P   +  LF + P IA     +   VIPF+     AD+ +G+  +IA+S I  IG++  G+ SNNKYS LGG+RAAAQ ISYEIPL + V+ I L
Sbjct:   33 VTYGILA----ERKVMGFMQGRIGPNQVGGRFGLLQTVADVLKLLLKEDSIPKAADKPLFILAPVIAFAPAFMVLAVIPFTDKFQFADIGVGLLYYIAVSGITTIGVVTGGWASNNKYSLLGGMRAAAQMISYEIPLVMSVIGIVL 174
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BACC2 (NADH-quinone oxidoreductase subunit H OS=Bacillus cereus (strain G9842) GN=nuoH PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.706e-26
Identity = 64/146 (43.84%), Postives = 89/146 (60.96%), Query Frame = 3 
Query:  189 ITIGVLVIVWLEREISAGIQQRIGP-EYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +T G+L     ER++   +Q RIGP +     G+LQ +AD  KLL KE+ +P   +  LF + P IA     +   VIPF+     AD+ +G+  +IA+S I  IG++  G+ SNNKYS LGG+RAAAQ ISYEIPL + V+ I L
Sbjct:   33 VTYGILA----ERKVMGFMQGRIGPNQVGGRFGLLQTVADVLKLLLKEDSIPKAADKPLFILAPVIAFAPAFMVLAVIPFTDKFQFADIGVGLLYYIAVSGITTIGVVTGGWASNNKYSLLGGMRAAAQMISYEIPLVMSVIGIVL 174
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BACC1 (NADH-quinone oxidoreductase subunit H OS=Bacillus cereus (strain ATCC 10987) GN=nuoH PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.706e-26
Identity = 64/146 (43.84%), Postives = 89/146 (60.96%), Query Frame = 3 
Query:  189 ITIGVLVIVWLEREISAGIQQRIGP-EYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +T G+L     ER++   +Q RIGP +     G+LQ +AD  KLL KE+ +P   +  LF + P IA     +   VIPF+     AD+ +G+  +IA+S I  IG++  G+ SNNKYS LGG+RAAAQ ISYEIPL + V+ I L
Sbjct:   33 VTYGILA----ERKVMGFMQGRIGPNQVGGRFGLLQTVADVLKLLLKEDSIPKAADKPLFILAPVIAFAPAFMVLAVIPFTDKFQFADIGVGLLYYIAVSGITTIGVVTGGWASNNKYSLLGGMRAAAQMISYEIPLVMSVIGIVL 174
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BACC0 (NADH-quinone oxidoreductase subunit H OS=Bacillus cereus (strain AH820) GN=nuoH PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.706e-26
Identity = 64/146 (43.84%), Postives = 89/146 (60.96%), Query Frame = 3 
Query:  189 ITIGVLVIVWLEREISAGIQQRIGP-EYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +T G+L     ER++   +Q RIGP +     G+LQ +AD  KLL KE+ +P   +  LF + P IA     +   VIPF+     AD+ +G+  +IA+S I  IG++  G+ SNNKYS LGG+RAAAQ ISYEIPL + V+ I L
Sbjct:   33 VTYGILA----ERKVMGFMQGRIGPNQVGGRFGLLQTVADVLKLLLKEDSIPKAADKPLFILAPVIAFAPAFMVLAVIPFTDKFQFADIGVGLLYYIAVSGITTIGVVTGGWASNNKYSLLGGMRAAAQMISYEIPLVMSVIGIVL 174
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BACAN (NADH-quinone oxidoreductase subunit H OS=Bacillus anthracis GN=nuoH PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.706e-26
Identity = 64/146 (43.84%), Postives = 89/146 (60.96%), Query Frame = 3 
Query:  189 ITIGVLVIVWLEREISAGIQQRIGP-EYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +T G+L     ER++   +Q RIGP +     G+LQ +AD  KLL KE+ +P   +  LF + P IA     +   VIPF+     AD+ +G+  +IA+S I  IG++  G+ SNNKYS LGG+RAAAQ ISYEIPL + V+ I L
Sbjct:   33 VTYGILA----ERKVMGFMQGRIGPNQVGGRFGLLQTVADVLKLLLKEDSIPKAADKPLFILAPVIAFAPAFMVLAVIPFTDKFQFADIGVGLLYYIAVSGITTIGVVTGGWASNNKYSLLGGMRAAAQMISYEIPLVMSVIGIVL 174
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BACAH (NADH-quinone oxidoreductase subunit H OS=Bacillus thuringiensis (strain Al Hakam) GN=nuoH PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.706e-26
Identity = 64/146 (43.84%), Postives = 89/146 (60.96%), Query Frame = 3 
Query:  189 ITIGVLVIVWLEREISAGIQQRIGP-EYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +T G+L     ER++   +Q RIGP +     G+LQ +AD  KLL KE+ +P   +  LF + P IA     +   VIPF+     AD+ +G+  +IA+S I  IG++  G+ SNNKYS LGG+RAAAQ ISYEIPL + V+ I L
Sbjct:   33 VTYGILA----ERKVMGFMQGRIGPNQVGGRFGLLQTVADVLKLLLKEDSIPKAADKPLFILAPVIAFAPAFMVLAVIPFTDKFQFADIGVGLLYYIAVSGITTIGVVTGGWASNNKYSLLGGMRAAAQMISYEIPLVMSVIGIVL 174
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BACAC (NADH-quinone oxidoreductase subunit H OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=nuoH PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.706e-26
Identity = 64/146 (43.84%), Postives = 89/146 (60.96%), Query Frame = 3 
Query:  189 ITIGVLVIVWLEREISAGIQQRIGP-EYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +T G+L     ER++   +Q RIGP +     G+LQ +AD  KLL KE+ +P   +  LF + P IA     +   VIPF+     AD+ +G+  +IA+S I  IG++  G+ SNNKYS LGG+RAAAQ ISYEIPL + V+ I L
Sbjct:   33 VTYGILA----ERKVMGFMQGRIGPNQVGGRFGLLQTVADVLKLLLKEDSIPKAADKPLFILAPVIAFAPAFMVLAVIPFTDKFQFADIGVGLLYYIAVSGITTIGVVTGGWASNNKYSLLGGMRAAAQMISYEIPLVMSVIGIVL 174
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BACAA (NADH-quinone oxidoreductase subunit H OS=Bacillus anthracis (strain A0248) GN=nuoH PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.706e-26
Identity = 64/146 (43.84%), Postives = 89/146 (60.96%), Query Frame = 3 
Query:  189 ITIGVLVIVWLEREISAGIQQRIGP-EYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +T G+L     ER++   +Q RIGP +     G+LQ +AD  KLL KE+ +P   +  LF + P IA     +   VIPF+     AD+ +G+  +IA+S I  IG++  G+ SNNKYS LGG+RAAAQ ISYEIPL + V+ I L
Sbjct:   33 VTYGILA----ERKVMGFMQGRIGPNQVGGRFGLLQTVADVLKLLLKEDSIPKAADKPLFILAPVIAFAPAFMVLAVIPFTDKFQFADIGVGLLYYIAVSGITTIGVVTGGWASNNKYSLLGGMRAAAQMISYEIPLVMSVIGIVL 174
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_ACIC1 (NADH-quinone oxidoreductase subunit H OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=nuoH PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.706e-26
Identity = 61/169 (36.09%), Postives = 101/169 (59.76%), Query Frame = 3 
Query:  147 ILWVLAPISIYVLA-ITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFS---------YNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            I W++   ++ V A + +  L ++W ER + A +QQRIGP    P G+LQ+LADG KL  KE+++P+  + ++F + P I+     L++ VIPF           NL L DL + +   +A+SS+   G++++G+ S + Y  LGG+R+AAQ +SYEI + L  + + L
Sbjct:   27 IWWLIIVKTLGVFAFLVLATLFMIWAERRVVARMQQRIGPNRVGPFGLLQSLADGLKLALKEDIVPTLADKAVFILAPVISATPAFLAFAVIPFGPTVSIAGHHTNLQLTDLPVAVLFVLAMSSLGVYGIVLAGWSSGSPYPLLGGVRSAAQVVSYEIAMGLSFVGVFL 195
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOH_BACC44.706e-2643.84NADH-quinone oxidoreductase subunit H OS=Bacillus ... [more]
NUOH_BACC34.706e-2643.84NADH-quinone oxidoreductase subunit H OS=Bacillus ... [more]
NUOH_BACC24.706e-2643.84NADH-quinone oxidoreductase subunit H OS=Bacillus ... [more]
NUOH_BACC14.706e-2643.84NADH-quinone oxidoreductase subunit H OS=Bacillus ... [more]
NUOH_BACC04.706e-2643.84NADH-quinone oxidoreductase subunit H OS=Bacillus ... [more]
NUOH_BACAN4.706e-2643.84NADH-quinone oxidoreductase subunit H OS=Bacillus ... [more]
NUOH_BACAH4.706e-2643.84NADH-quinone oxidoreductase subunit H OS=Bacillus ... [more]
NUOH_BACAC4.706e-2643.84NADH-quinone oxidoreductase subunit H OS=Bacillus ... [more]
NUOH_BACAA4.706e-2643.84NADH-quinone oxidoreductase subunit H OS=Bacillus ... [more]
NUOH_ACIC14.706e-2636.09NADH-quinone oxidoreductase subunit H OS=Acidother... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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