CK939407
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH2_SOLUE (NADH-quinone oxidoreductase subunit H 2 OS=Solibacter usitatus (strain Ellin6076) GN=nuoH2 PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 4.706e-26 Identity = 59/153 (38.56%), Postives = 99/153 (64.71%), Query Frame = 3 Query: 165 PISIYVLAITIGVLV---IVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLS 614 P+ + ++ I LV IV +ER++ A Q R+GP P G+LQ +AD KLL KE+++P+ + ++F P I+ I L+++ VIPF+ + +AD+N+G+ + A S++ +G+++ G+ SN+ YS LG LR+AAQ +SYE+ L +LS Sbjct: 12 PVLVTLVIIAAFPLVAGYIVLVERKVLADFQVRLGPMRCGPHGLLQPIADALKLLLKEDIIPTDSDKAIFWFAPCISTITGLVAFAVIPFARKIYVADVNVGLLVISATSAVGILGIILGGWSSNSHYSLLGALRSAAQLVSYEVALAFALLS 164
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_YARLI (NADH-ubiquinone oxidoreductase chain 1 OS=Yarrowia lipolytica GN=ND1 PE=1 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 4.706e-26 Identity = 62/157 (39.49%), Postives = 93/157 (59.24%), Query Frame = 3 Query: 159 LAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629 + I I+++ + V + ER+ A +Q+R+GP + G+LQA AD KLL KE +LP N + I P I +I L+ ++VIP + L +LN+GI +AI S+ G L+SG+ SN+KYS LG +R+ AQ ISYE+ LT + I + V Sbjct: 5 IVEILIFLVCVLFSVAYLTVAERKTLAYMQRRLGPNFVGYYGLLQAFADAVKLLLKEIVLPKESNYIILVISPLITLITALIGWVVIPLGPGITLGELNLGILFSLAIGSLGVFGSLLSGWSSNSKYSLLGSIRSTAQLISYELILTSIFIIIIMFV 161
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_OCHA4 (NADH-quinone oxidoreductase subunit H OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=nuoH PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 6.146e-26 Identity = 55/152 (36.18%), Postives = 95/152 (62.50%), Query Frame = 3 Query: 174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629 + ++ + I V +++ +R+I A +Q R GP P G+ QA AD K +FKE ++PS N +F + P ++ + + ++ VIP + +A++N+GI AISS+ G++M G+ SN+KY FLG LR+AAQ +SYE+ + ++++ L V Sbjct: 21 VLLVVLLIVVAYLLYADRKIWAAVQLRRGPNVVGPWGLFQAFADLLKFVFKEPIIPSGANKGVFLLAPFVSAVLAMATWAVIPVNEGWAIANINVGILYIFAISSLEVYGVIMGGWASNSKYPFLGALRSAAQMVSYEVSIGFVIVTVLLTV 172
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_NITHX (NADH-quinone oxidoreductase subunit H OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=nuoH PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 6.146e-26 Identity = 56/162 (34.57%), Postives = 101/162 (62.35%), Query Frame = 3 Query: 138 VYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 ++ ++ ++A + ++ + I + I+ +R+I A +Q R GP P G+LQ+ AD K + KE ++PS N +F + P + + L ++ VIP + N V++D+N+GI AISS++ G++M+G+ SN+KY FL LR+AAQ +SYE+ + +++ L Sbjct: 14 LWPLIVMVAQSVLLLVVLLIAIAYILLADRKIWAAVQIRRGPNVVGPWGLLQSFADLLKFVLKEPIIPSGSNKGVFLLAPLVTCVLALAAWAVIPVNLNWVISDINVGILYIFAISSLSIYGIIMAGWSSNSKYPFLAALRSAAQMVSYEVSIGFVFITVLL 175
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BRUSU (NADH-quinone oxidoreductase subunit H OS=Brucella suis GN=nuoH PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 6.146e-26 Identity = 56/152 (36.84%), Postives = 95/152 (62.50%), Query Frame = 3 Query: 174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629 + ++ + I V +++ +R+I A +Q R GP P G+ QA AD K +FKE ++PS N +F + P I+ + + ++ VIP + +A++N+GI AISS+ G++M G+ SN+KY FLG LR+AAQ +SYE+ + ++++ L V Sbjct: 21 VLLVVLLIVVAYLLYADRKIWAAVQLRRGPNVVGPWGLFQAFADLLKFVFKEPIIPSGANKGVFLLAPFISAVLAMATWAVIPVNEGWAVANINVGILYIFAISSLEVYGVIMGGWASNSKYPFLGALRSAAQMVSYEVSIGFVIVTVLLTV 172
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BRUSI (NADH-quinone oxidoreductase subunit H OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=nuoH PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 6.146e-26 Identity = 56/152 (36.84%), Postives = 95/152 (62.50%), Query Frame = 3 Query: 174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629 + ++ + I V +++ +R+I A +Q R GP P G+ QA AD K +FKE ++PS N +F + P I+ + + ++ VIP + +A++N+GI AISS+ G++M G+ SN+KY FLG LR+AAQ +SYE+ + ++++ L V Sbjct: 21 VLLVVLLIVVAYLLYADRKIWAAVQLRRGPNVVGPWGLFQAFADLLKFVFKEPIIPSGANKGVFLLAPFISAVLAMATWAVIPVNEGWAVANINVGILYIFAISSLEVYGVIMGGWASNSKYPFLGALRSAAQMVSYEVSIGFVIVTVLLTV 172
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BRUMB (NADH-quinone oxidoreductase subunit H OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=nuoH PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 6.146e-26 Identity = 56/152 (36.84%), Postives = 95/152 (62.50%), Query Frame = 3 Query: 174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629 + ++ + I V +++ +R+I A +Q R GP P G+ QA AD K +FKE ++PS N +F + P I+ + + ++ VIP + +A++N+GI AISS+ G++M G+ SN+KY FLG LR+AAQ +SYE+ + ++++ L V Sbjct: 21 VLLVVLLIVVAYLLYADRKIWAAVQLRRGPNVVGPWGLFQAFADLLKFVFKEPIIPSGANKGVFLLAPFISAVLAMATWAVIPVNEGWAVANINVGILYIFAISSLEVYGVIMGGWASNSKYPFLGALRSAAQMVSYEVSIGFVIVTVLLTV 172
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BRUC2 (NADH-quinone oxidoreductase subunit H OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=nuoH PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 6.146e-26 Identity = 56/152 (36.84%), Postives = 95/152 (62.50%), Query Frame = 3 Query: 174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629 + ++ + I V +++ +R+I A +Q R GP P G+ QA AD K +FKE ++PS N +F + P I+ + + ++ VIP + +A++N+GI AISS+ G++M G+ SN+KY FLG LR+AAQ +SYE+ + ++++ L V Sbjct: 21 VLLVVLLIVVAYLLYADRKIWAAVQLRRGPNVVGPWGLFQAFADLLKFVFKEPIIPSGANKGVFLLAPFISAVLAMATWAVIPVNEGWAVANINVGILYIFAISSLEVYGVIMGGWASNSKYPFLGALRSAAQMVSYEVSIGFVIVTVLLTV 172
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BRUAB (NADH-quinone oxidoreductase subunit H OS=Brucella abortus GN=nuoH PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 6.146e-26 Identity = 56/152 (36.84%), Postives = 95/152 (62.50%), Query Frame = 3 Query: 174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629 + ++ + I V +++ +R+I A +Q R GP P G+ QA AD K +FKE ++PS N +F + P I+ + + ++ VIP + +A++N+GI AISS+ G++M G+ SN+KY FLG LR+AAQ +SYE+ + ++++ L V Sbjct: 21 VLLVVLLIVVAYLLYADRKIWAAVQLRRGPNVVGPWGLFQAFADLLKFVFKEPIIPSGANKGVFLLAPFISAVLAMATWAVIPVNEGWAVANINVGILYIFAISSLEVYGVIMGGWASNSKYPFLGALRSAAQMVSYEVSIGFVIVTVLLTV 172
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BRUA2 (NADH-quinone oxidoreductase subunit H OS=Brucella abortus (strain 2308) GN=nuoH PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 6.146e-26 Identity = 56/152 (36.84%), Postives = 95/152 (62.50%), Query Frame = 3 Query: 174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629 + ++ + I V +++ +R+I A +Q R GP P G+ QA AD K +FKE ++PS N +F + P I+ + + ++ VIP + +A++N+GI AISS+ G++M G+ SN+KY FLG LR+AAQ +SYE+ + ++++ L V Sbjct: 21 VLLVVLLIVVAYLLYADRKIWAAVQLRRGPNVVGPWGLFQAFADLLKFVFKEPIIPSGANKGVFLLAPFISAVLAMATWAVIPVNEGWAVANINVGILYIFAISSLEVYGVIMGGWASNSKYPFLGALRSAAQMVSYEVSIGFVIVTVLLTV 172 The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bpback to top |