CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH2_SOLUE (NADH-quinone oxidoreductase subunit H 2 OS=Solibacter usitatus (strain Ellin6076) GN=nuoH2 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.706e-26
Identity = 59/153 (38.56%), Postives = 99/153 (64.71%), Query Frame = 3
Query:  165 PISIYVLAITIGVLV---IVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLS 614
            P+ + ++ I    LV   IV +ER++ A  Q R+GP    P G+LQ +AD  KLL KE+++P+  + ++F   P I+ I  L+++ VIPF+  + +AD+N+G+ +  A S++  +G+++ G+ SN+ YS LG LR+AAQ +SYE+ L   +LS
Sbjct:   12 PVLVTLVIIAAFPLVAGYIVLVERKVLADFQVRLGPMRCGPHGLLQPIADALKLLLKEDIIPTDSDKAIFWFAPCISTITGLVAFAVIPFARKIYVADVNVGLLVISATSAVGILGIILGGWSSNSHYSLLGALRSAAQLVSYEVALAFALLS 164          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_YARLI (NADH-ubiquinone oxidoreductase chain 1 OS=Yarrowia lipolytica GN=ND1 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.706e-26
Identity = 62/157 (39.49%), Postives = 93/157 (59.24%), Query Frame = 3
Query:  159 LAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            +  I I+++ +   V  +   ER+  A +Q+R+GP +    G+LQA AD  KLL KE +LP   N  +  I P I +I  L+ ++VIP    + L +LN+GI   +AI S+   G L+SG+ SN+KYS LG +R+ AQ ISYE+ LT   + I + V
Sbjct:    5 IVEILIFLVCVLFSVAYLTVAERKTLAYMQRRLGPNFVGYYGLLQAFADAVKLLLKEIVLPKESNYIILVISPLITLITALIGWVVIPLGPGITLGELNLGILFSLAIGSLGVFGSLLSGWSSNSKYSLLGSIRSTAQLISYELILTSIFIIIIMFV 161          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_OCHA4 (NADH-quinone oxidoreductase subunit H OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=nuoH PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.146e-26
Identity = 55/152 (36.18%), Postives = 95/152 (62.50%), Query Frame = 3
Query:  174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            + ++ + I V  +++ +R+I A +Q R GP    P G+ QA AD  K +FKE ++PS  N  +F + P ++ +  + ++ VIP +    +A++N+GI    AISS+   G++M G+ SN+KY FLG LR+AAQ +SYE+ +   ++++ L V
Sbjct:   21 VLLVVLLIVVAYLLYADRKIWAAVQLRRGPNVVGPWGLFQAFADLLKFVFKEPIIPSGANKGVFLLAPFVSAVLAMATWAVIPVNEGWAIANINVGILYIFAISSLEVYGVIMGGWASNSKYPFLGALRSAAQMVSYEVSIGFVIVTVLLTV 172          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_NITHX (NADH-quinone oxidoreductase subunit H OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=nuoH PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.146e-26
Identity = 56/162 (34.57%), Postives = 101/162 (62.35%), Query Frame = 3
Query:  138 VYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++ ++ ++A   + ++ + I +  I+  +R+I A +Q R GP    P G+LQ+ AD  K + KE ++PS  N  +F + P +  +  L ++ VIP + N V++D+N+GI    AISS++  G++M+G+ SN+KY FL  LR+AAQ +SYE+ +    +++ L
Sbjct:   14 LWPLIVMVAQSVLLLVVLLIAIAYILLADRKIWAAVQIRRGPNVVGPWGLLQSFADLLKFVLKEPIIPSGSNKGVFLLAPLVTCVLALAAWAVIPVNLNWVISDINVGILYIFAISSLSIYGIIMAGWSSNSKYPFLAALRSAAQMVSYEVSIGFVFITVLL 175          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BRUSU (NADH-quinone oxidoreductase subunit H OS=Brucella suis GN=nuoH PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.146e-26
Identity = 56/152 (36.84%), Postives = 95/152 (62.50%), Query Frame = 3
Query:  174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            + ++ + I V  +++ +R+I A +Q R GP    P G+ QA AD  K +FKE ++PS  N  +F + P I+ +  + ++ VIP +    +A++N+GI    AISS+   G++M G+ SN+KY FLG LR+AAQ +SYE+ +   ++++ L V
Sbjct:   21 VLLVVLLIVVAYLLYADRKIWAAVQLRRGPNVVGPWGLFQAFADLLKFVFKEPIIPSGANKGVFLLAPFISAVLAMATWAVIPVNEGWAVANINVGILYIFAISSLEVYGVIMGGWASNSKYPFLGALRSAAQMVSYEVSIGFVIVTVLLTV 172          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BRUSI (NADH-quinone oxidoreductase subunit H OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=nuoH PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.146e-26
Identity = 56/152 (36.84%), Postives = 95/152 (62.50%), Query Frame = 3
Query:  174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            + ++ + I V  +++ +R+I A +Q R GP    P G+ QA AD  K +FKE ++PS  N  +F + P I+ +  + ++ VIP +    +A++N+GI    AISS+   G++M G+ SN+KY FLG LR+AAQ +SYE+ +   ++++ L V
Sbjct:   21 VLLVVLLIVVAYLLYADRKIWAAVQLRRGPNVVGPWGLFQAFADLLKFVFKEPIIPSGANKGVFLLAPFISAVLAMATWAVIPVNEGWAVANINVGILYIFAISSLEVYGVIMGGWASNSKYPFLGALRSAAQMVSYEVSIGFVIVTVLLTV 172          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BRUMB (NADH-quinone oxidoreductase subunit H OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=nuoH PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.146e-26
Identity = 56/152 (36.84%), Postives = 95/152 (62.50%), Query Frame = 3
Query:  174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            + ++ + I V  +++ +R+I A +Q R GP    P G+ QA AD  K +FKE ++PS  N  +F + P I+ +  + ++ VIP +    +A++N+GI    AISS+   G++M G+ SN+KY FLG LR+AAQ +SYE+ +   ++++ L V
Sbjct:   21 VLLVVLLIVVAYLLYADRKIWAAVQLRRGPNVVGPWGLFQAFADLLKFVFKEPIIPSGANKGVFLLAPFISAVLAMATWAVIPVNEGWAVANINVGILYIFAISSLEVYGVIMGGWASNSKYPFLGALRSAAQMVSYEVSIGFVIVTVLLTV 172          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BRUC2 (NADH-quinone oxidoreductase subunit H OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=nuoH PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.146e-26
Identity = 56/152 (36.84%), Postives = 95/152 (62.50%), Query Frame = 3
Query:  174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            + ++ + I V  +++ +R+I A +Q R GP    P G+ QA AD  K +FKE ++PS  N  +F + P I+ +  + ++ VIP +    +A++N+GI    AISS+   G++M G+ SN+KY FLG LR+AAQ +SYE+ +   ++++ L V
Sbjct:   21 VLLVVLLIVVAYLLYADRKIWAAVQLRRGPNVVGPWGLFQAFADLLKFVFKEPIIPSGANKGVFLLAPFISAVLAMATWAVIPVNEGWAVANINVGILYIFAISSLEVYGVIMGGWASNSKYPFLGALRSAAQMVSYEVSIGFVIVTVLLTV 172          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BRUAB (NADH-quinone oxidoreductase subunit H OS=Brucella abortus GN=nuoH PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.146e-26
Identity = 56/152 (36.84%), Postives = 95/152 (62.50%), Query Frame = 3
Query:  174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            + ++ + I V  +++ +R+I A +Q R GP    P G+ QA AD  K +FKE ++PS  N  +F + P I+ +  + ++ VIP +    +A++N+GI    AISS+   G++M G+ SN+KY FLG LR+AAQ +SYE+ +   ++++ L V
Sbjct:   21 VLLVVLLIVVAYLLYADRKIWAAVQLRRGPNVVGPWGLFQAFADLLKFVFKEPIIPSGANKGVFLLAPFISAVLAMATWAVIPVNEGWAVANINVGILYIFAISSLEVYGVIMGGWASNSKYPFLGALRSAAQMVSYEVSIGFVIVTVLLTV 172          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BRUA2 (NADH-quinone oxidoreductase subunit H OS=Brucella abortus (strain 2308) GN=nuoH PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.146e-26
Identity = 56/152 (36.84%), Postives = 95/152 (62.50%), Query Frame = 3
Query:  174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            + ++ + I V  +++ +R+I A +Q R GP    P G+ QA AD  K +FKE ++PS  N  +F + P I+ +  + ++ VIP +    +A++N+GI    AISS+   G++M G+ SN+KY FLG LR+AAQ +SYE+ +   ++++ L V
Sbjct:   21 VLLVVLLIVVAYLLYADRKIWAAVQLRRGPNVVGPWGLFQAFADLLKFVFKEPIIPSGANKGVFLLAPFISAVLAMATWAVIPVNEGWAVANINVGILYIFAISSLEVYGVIMGGWASNSKYPFLGALRSAAQMVSYEVSIGFVIVTVLLTV 172          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOH2_SOLUE4.706e-2638.56NADH-quinone oxidoreductase subunit H 2 OS=Solibac... [more]
NU1M_YARLI4.706e-2639.49NADH-ubiquinone oxidoreductase chain 1 OS=Yarrowia... [more]
NUOH_OCHA46.146e-2636.18NADH-quinone oxidoreductase subunit H OS=Ochrobact... [more]
NUOH_NITHX6.146e-2634.57NADH-quinone oxidoreductase subunit H OS=Nitrobact... [more]
NUOH_BRUSU6.146e-2636.84NADH-quinone oxidoreductase subunit H OS=Brucella ... [more]
NUOH_BRUSI6.146e-2636.84NADH-quinone oxidoreductase subunit H OS=Brucella ... [more]
NUOH_BRUMB6.146e-2636.84NADH-quinone oxidoreductase subunit H OS=Brucella ... [more]
NUOH_BRUC26.146e-2636.84NADH-quinone oxidoreductase subunit H OS=Brucella ... [more]
NUOH_BRUAB6.146e-2636.84NADH-quinone oxidoreductase subunit H OS=Brucella ... [more]
NUOH_BRUA26.146e-2636.84NADH-quinone oxidoreductase subunit H OS=Brucella ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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