CK939407
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BRAJA (NADH-quinone oxidoreductase subunit H OS=Bradyrhizobium japonicum GN=nuoH PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 6.146e-26 Identity = 58/164 (35.37%), Postives = 101/164 (61.59%), Query Frame = 3 Query: 144 GILW---VLAPISIYVLAIT-IGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 G LW ++ S+ VL + + + I+ +R+I A +Q R GP P G+LQ+ AD K + KE ++P+ N +F + P ++ + L ++ VIP + V++D+N+GI AISS++ G++M+G+ SN+KY FL LR+AAQ +SYE+ + ++++ L Sbjct: 11 GFLWPLIIMVAESVLVLVVLLVAIAYILLADRKIWAAVQIRRGPNVVGPWGLLQSFADLLKFVLKEPIIPAGANKGVFLLAPLVSCVLALAAWAVIPTNLGWVISDINVGILFIFAISSLSIYGIIMAGWSSNSKYPFLAALRSAAQMVSYEVSIGFVIITVLL 174
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BACWK (NADH-quinone oxidoreductase subunit H OS=Bacillus weihenstephanensis (strain KBAB4) GN=nuoH PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 6.146e-26 Identity = 63/146 (43.15%), Postives = 89/146 (60.96%), Query Frame = 3 Query: 189 ITIGVLVIVWLEREISAGIQQRIGP-EYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 +T G+L ER++ +Q RIGP + G+LQ +AD KLL KE+ +P + LF + P IA + VIPF+ AD+ +G+ +IA+S I IG++ G+ SNNKYS LGG+RAAAQ ISYEIPL + V+ + L Sbjct: 33 VTYGILA----ERKVMGFMQGRIGPNQVGGRFGLLQTVADVLKLLLKEDSIPKAADKPLFILAPVIAFAPAFMVLAVIPFTDKFQFADIGVGLLYYIAVSGITTIGVVTGGWASNNKYSLLGGMRAAAQMISYEIPLVMSVIGVVL 174
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_PARL1 (NADH-quinone oxidoreductase subunit H OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=nuoH PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 8.027e-26 Identity = 65/164 (39.63%), Postives = 100/164 (60.98%), Query Frame = 3 Query: 141 YGILWVLAPISIYVLAITIGVLVI----VWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPL---TLCVL 611 YGI LA I+ LA+ + +L++ + +R+I A +Q R GP G+LQ+ AD K +FKE ++P+ N +F + P + V+ L + VIP +V+AD+N+GI AISS+ G++M+G+ SN+KY FL LRAAAQ +SYE+ + +CVL Sbjct: 8 YGI--PLAIIAAQSLALIVALLLVTAYVLLADRKIWAAVQLRRGPNVVGAFGLLQSFADLLKFVFKEIVIPAGANKGIFLLAPLVTVVLALSGWAVIPLDARMVIADINVGILYIFAISSLGVYGVIMAGWASNSKYPFLSALRAAAQMVSYEVSIGFVIVCVL 169
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_CHLTE (NADH-quinone oxidoreductase subunit H OS=Chlorobium tepidum GN=nuoH PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 8.027e-26 Identity = 62/152 (40.79%), Postives = 98/152 (64.47%), Query Frame = 3 Query: 168 ISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 + I + A+T GV + ER+ISA +Q R+GP G+LQ LAD KLL KE+++P+ + LF IGP I + L++ V+PF + ADLN+G+F + I +I +G+L +G+GSNNK++ G +R+ AQ +SYEIP ++ +L ++ Sbjct: 35 VFIALYALTYGV----YGERKISAFMQDRLGPMEVGFWGLLQTLADILKLLQKEDIVPTVADKFLFVIGPGILFVGSFLAFAVLPFGPAFIGADLNVGLFYAVGIVAIEVVGILAAGWGSNNKWALYGAVRSVAQIVSYEIPASIALLCAAM 182
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_AGRVS (NADH-quinone oxidoreductase subunit H OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=nuoH PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 8.027e-26 Identity = 55/150 (36.67%), Postives = 95/150 (63.33%), Query Frame = 3 Query: 174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 + ++ + + + I+ +R+I A +Q R GP P G+ Q+ AD K +FKE ++P+ N ++F + P +AV L ++ VIP + V+A++N+GI AISS+ G++M G+ SN+KY FLG LR+AAQ +SYE+ + ++++ L Sbjct: 21 LLLVCLLVFIAYILLADRKIWAAVQLRRGPNVVGPWGLFQSFADLLKFVFKEPIIPAGANKAVFLLAPLVAVTLALATWAVIPLNQGWVIANINVGILYVFAISSLEVYGIIMGGWASNSKYPFLGALRSAAQMVSYEVSIGFVIVTVLL 170
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_AGRRK (NADH-quinone oxidoreductase subunit H OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=nuoH PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 8.027e-26 Identity = 54/152 (35.53%), Postives = 98/152 (64.47%), Query Frame = 3 Query: 174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629 + ++ + + + I+ +R+I A +Q R GP P G+ Q+ AD K + KE ++P+ N ++F + P ++V+ L ++ V+P + V+A++N+GI +AISS+ G++M G+ SN+KY FLG LR+AAQ +SYE+ + L ++++ L V Sbjct: 21 LLLVCLLVFIAYILLADRKIWAAVQLRRGPNVVGPFGLFQSFADLLKFMVKEPIIPAGANKAVFLLAPLVSVVLALSTWAVVPVANGWVIANINVGILYILAISSLEVYGIIMGGWASNSKYPFLGALRSAAQMVSYEVSIGLVIVTVLLCV 172
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_TRIRU (NADH-ubiquinone oxidoreductase chain 1 OS=Trichophyton rubrum GN=ND1 PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 8.027e-26 Identity = 61/144 (42.36%), Postives = 93/144 (64.58%), Query Frame = 3 Query: 201 VLVIVWL---EREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 +L++ +L ER+ A +Q+R+G G+LQA AD KLL KE + P++ N L +GP I +I LL Y VIP+ L ++D N+GI +A+SS+A G+L++G+ +N+KY+FLG LR+ AQ ISYE+ L +L + L Sbjct: 18 LLIVAFLTISERKTMASMQRRLGQNIVGYYGLLQAFADALKLLLKEYVAPTQANIILLFLGPIITLIFSLLGYRVIPYGSGLFISDFNLGILYILAVSSLATYGILLAGWSANSKYAFLGSLRSTAQLISYELLLRFYILLVIL 161
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_METSE (NADH-ubiquinone oxidoreductase chain 1 OS=Metridium senile GN=ND1 PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 8.027e-26 Identity = 60/158 (37.97%), Postives = 97/158 (61.39%), Query Frame = 3 Query: 156 VLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629 ++ I I V+ + + V + ER++ +Q R GP G+LQ LADG KL KE ++P N ++ P ++ L+++ VIP+ +V++DL IGI +A+SSI+ +LMSG+ S +KY+FLG +RAAAQ ISYE+ + L ++++ L V Sbjct: 15 IILKILIIVIPLLVAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPLADGIKLFTKELVIPHYANLFIYVAAPVLSFTLALIAWGVIPYDKGVVISDLKIGILFTLAVSSISVYAILMSGWASQSKYAFLGAIRAAAQMISYEVSIGLIIITVILCV 172
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_CHICK (NADH-ubiquinone oxidoreductase chain 1 OS=Gallus gallus GN=MT-ND1 PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 8.027e-26 Identity = 62/146 (42.47%), Postives = 92/146 (63.01%), Query Frame = 3 Query: 177 YVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLS 614 Y+L I I V + +ER+I + +Q R GP P G+LQ +ADG KL KE + PS + LF I P +A++ L ++ +P + L ADLN+G+ +A+SS+ LL SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LS Sbjct: 16 YILPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPFLFIITPILALLLALTIWVPLPLPFPL--ADLNLGLLFLLAMSSLTVYSLLWSGWASNSKYALIGALRAVAQTISYEVTLAIILLS 159
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_WOLPM (NADH-quinone oxidoreductase subunit H OS=Wolbachia pipientis wMel GN=nuoH PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 1.048e-25 Identity = 62/175 (35.43%), Postives = 103/175 (58.86%), Query Frame = 3 Query: 129 LQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNL------------VLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 + + IL++L P+ + V +T + ER++ A IQ R GP P G+LQ AD KLL KE ++P R ++ LF + P + I L+++ VIPF + V+A++N+G+ +AISS+ G++++G+ SN+ Y+FLG +R+AAQ ISYE+ + L V ++ Sbjct: 1 MNTLVNILFILVPLLLSVAYLT-------YFERKVLAAIQLRHGPSVVGPFGLLQPFADAIKLLIKEPIIPFRASTILFIMAPMLTFILALIAWAVIPFGAEVIVENGQQVIIPKVIANINVGVLYVLAISSLGVYGVIIAGWSSNSNYAFLGAIRSAAQMISYEVSIGLIVAAV 168 The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bpback to top |