CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BRAJA (NADH-quinone oxidoreductase subunit H OS=Bradyrhizobium japonicum GN=nuoH PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.146e-26
Identity = 58/164 (35.37%), Postives = 101/164 (61.59%), Query Frame = 3
Query:  144 GILW---VLAPISIYVLAIT-IGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            G LW   ++   S+ VL +  + +  I+  +R+I A +Q R GP    P G+LQ+ AD  K + KE ++P+  N  +F + P ++ +  L ++ VIP +   V++D+N+GI    AISS++  G++M+G+ SN+KY FL  LR+AAQ +SYE+ +   ++++ L
Sbjct:   11 GFLWPLIIMVAESVLVLVVLLVAIAYILLADRKIWAAVQIRRGPNVVGPWGLLQSFADLLKFVLKEPIIPAGANKGVFLLAPLVSCVLALAAWAVIPTNLGWVISDINVGILFIFAISSLSIYGIIMAGWSSNSKYPFLAALRSAAQMVSYEVSIGFVIITVLL 174          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BACWK (NADH-quinone oxidoreductase subunit H OS=Bacillus weihenstephanensis (strain KBAB4) GN=nuoH PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.146e-26
Identity = 63/146 (43.15%), Postives = 89/146 (60.96%), Query Frame = 3
Query:  189 ITIGVLVIVWLEREISAGIQQRIGP-EYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +T G+L     ER++   +Q RIGP +     G+LQ +AD  KLL KE+ +P   +  LF + P IA     +   VIPF+     AD+ +G+  +IA+S I  IG++  G+ SNNKYS LGG+RAAAQ ISYEIPL + V+ + L
Sbjct:   33 VTYGILA----ERKVMGFMQGRIGPNQVGGRFGLLQTVADVLKLLLKEDSIPKAADKPLFILAPVIAFAPAFMVLAVIPFTDKFQFADIGVGLLYYIAVSGITTIGVVTGGWASNNKYSLLGGMRAAAQMISYEIPLVMSVIGVVL 174          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_PARL1 (NADH-quinone oxidoreductase subunit H OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=nuoH PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.027e-26
Identity = 65/164 (39.63%), Postives = 100/164 (60.98%), Query Frame = 3
Query:  141 YGILWVLAPISIYVLAITIGVLVI----VWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPL---TLCVL 611
            YGI   LA I+   LA+ + +L++    +  +R+I A +Q R GP      G+LQ+ AD  K +FKE ++P+  N  +F + P + V+  L  + VIP    +V+AD+N+GI    AISS+   G++M+G+ SN+KY FL  LRAAAQ +SYE+ +    +CVL
Sbjct:    8 YGI--PLAIIAAQSLALIVALLLVTAYVLLADRKIWAAVQLRRGPNVVGAFGLLQSFADLLKFVFKEIVIPAGANKGIFLLAPLVTVVLALSGWAVIPLDARMVIADINVGILYIFAISSLGVYGVIMAGWASNSKYPFLSALRAAAQMVSYEVSIGFVIVCVL 169          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_CHLTE (NADH-quinone oxidoreductase subunit H OS=Chlorobium tepidum GN=nuoH PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.027e-26
Identity = 62/152 (40.79%), Postives = 98/152 (64.47%), Query Frame = 3
Query:  168 ISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            + I + A+T GV    + ER+ISA +Q R+GP      G+LQ LAD  KLL KE+++P+  +  LF IGP I  +   L++ V+PF    + ADLN+G+F  + I +I  +G+L +G+GSNNK++  G +R+ AQ +SYEIP ++ +L  ++
Sbjct:   35 VFIALYALTYGV----YGERKISAFMQDRLGPMEVGFWGLLQTLADILKLLQKEDIVPTVADKFLFVIGPGILFVGSFLAFAVLPFGPAFIGADLNVGLFYAVGIVAIEVVGILAAGWGSNNKWALYGAVRSVAQIVSYEIPASIALLCAAM 182          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_AGRVS (NADH-quinone oxidoreductase subunit H OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=nuoH PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.027e-26
Identity = 55/150 (36.67%), Postives = 95/150 (63.33%), Query Frame = 3
Query:  174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            + ++ + + +  I+  +R+I A +Q R GP    P G+ Q+ AD  K +FKE ++P+  N ++F + P +AV   L ++ VIP +   V+A++N+GI    AISS+   G++M G+ SN+KY FLG LR+AAQ +SYE+ +   ++++ L
Sbjct:   21 LLLVCLLVFIAYILLADRKIWAAVQLRRGPNVVGPWGLFQSFADLLKFVFKEPIIPAGANKAVFLLAPLVAVTLALATWAVIPLNQGWVIANINVGILYVFAISSLEVYGIIMGGWASNSKYPFLGALRSAAQMVSYEVSIGFVIVTVLL 170          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_AGRRK (NADH-quinone oxidoreductase subunit H OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=nuoH PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.027e-26
Identity = 54/152 (35.53%), Postives = 98/152 (64.47%), Query Frame = 3
Query:  174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            + ++ + + +  I+  +R+I A +Q R GP    P G+ Q+ AD  K + KE ++P+  N ++F + P ++V+  L ++ V+P +   V+A++N+GI   +AISS+   G++M G+ SN+KY FLG LR+AAQ +SYE+ + L ++++ L V
Sbjct:   21 LLLVCLLVFIAYILLADRKIWAAVQLRRGPNVVGPFGLFQSFADLLKFMVKEPIIPAGANKAVFLLAPLVSVVLALSTWAVVPVANGWVIANINVGILYILAISSLEVYGIIMGGWASNSKYPFLGALRSAAQMVSYEVSIGLVIVTVLLCV 172          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_TRIRU (NADH-ubiquinone oxidoreductase chain 1 OS=Trichophyton rubrum GN=ND1 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.027e-26
Identity = 61/144 (42.36%), Postives = 93/144 (64.58%), Query Frame = 3
Query:  201 VLVIVWL---EREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +L++ +L   ER+  A +Q+R+G       G+LQA AD  KLL KE + P++ N  L  +GP I +I  LL Y VIP+   L ++D N+GI   +A+SS+A  G+L++G+ +N+KY+FLG LR+ AQ ISYE+ L   +L + L
Sbjct:   18 LLIVAFLTISERKTMASMQRRLGQNIVGYYGLLQAFADALKLLLKEYVAPTQANIILLFLGPIITLIFSLLGYRVIPYGSGLFISDFNLGILYILAVSSLATYGILLAGWSANSKYAFLGSLRSTAQLISYELLLRFYILLVIL 161          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_METSE (NADH-ubiquinone oxidoreductase chain 1 OS=Metridium senile GN=ND1 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.027e-26
Identity = 60/158 (37.97%), Postives = 97/158 (61.39%), Query Frame = 3
Query:  156 VLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            ++  I I V+ + + V  +   ER++   +Q R GP      G+LQ LADG KL  KE ++P   N  ++   P ++    L+++ VIP+   +V++DL IGI   +A+SSI+   +LMSG+ S +KY+FLG +RAAAQ ISYE+ + L ++++ L V
Sbjct:   15 IILKILIIVIPLLVAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPLADGIKLFTKELVIPHYANLFIYVAAPVLSFTLALIAWGVIPYDKGVVISDLKIGILFTLAVSSISVYAILMSGWASQSKYAFLGAIRAAAQMISYEVSIGLIIITVILCV 172          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_CHICK (NADH-ubiquinone oxidoreductase chain 1 OS=Gallus gallus GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.027e-26
Identity = 62/146 (42.47%), Postives = 92/146 (63.01%), Query Frame = 3
Query:  177 YVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLS 614
            Y+L I I V  +  +ER+I + +Q R GP    P G+LQ +ADG KL  KE + PS  +  LF I P +A++  L  ++ +P  + L  ADLN+G+   +A+SS+    LL SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LS
Sbjct:   16 YILPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPFLFIITPILALLLALTIWVPLPLPFPL--ADLNLGLLFLLAMSSLTVYSLLWSGWASNSKYALIGALRAVAQTISYEVTLAIILLS 159          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_WOLPM (NADH-quinone oxidoreductase subunit H OS=Wolbachia pipientis wMel GN=nuoH PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.048e-25
Identity = 62/175 (35.43%), Postives = 103/175 (58.86%), Query Frame = 3
Query:  129 LQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNL------------VLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +  +  IL++L P+ + V  +T       + ER++ A IQ R GP    P G+LQ  AD  KLL KE ++P R ++ LF + P +  I  L+++ VIPF   +            V+A++N+G+   +AISS+   G++++G+ SN+ Y+FLG +R+AAQ ISYE+ + L V ++
Sbjct:    1 MNTLVNILFILVPLLLSVAYLT-------YFERKVLAAIQLRHGPSVVGPFGLLQPFADAIKLLIKEPIIPFRASTILFIMAPMLTFILALIAWAVIPFGAEVIVENGQQVIIPKVIANINVGVLYVLAISSLGVYGVIIAGWSSNSNYAFLGAIRSAAQMISYEVSIGLIVAAV 168          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOH_BRAJA6.146e-2635.37NADH-quinone oxidoreductase subunit H OS=Bradyrhiz... [more]
NUOH_BACWK6.146e-2643.15NADH-quinone oxidoreductase subunit H OS=Bacillus ... [more]
NUOH_PARL18.027e-2639.63NADH-quinone oxidoreductase subunit H OS=Parvibacu... [more]
NUOH_CHLTE8.027e-2640.79NADH-quinone oxidoreductase subunit H OS=Chlorobiu... [more]
NUOH_AGRVS8.027e-2636.67NADH-quinone oxidoreductase subunit H OS=Agrobacte... [more]
NUOH_AGRRK8.027e-2635.53NADH-quinone oxidoreductase subunit H OS=Agrobacte... [more]
NU1M_TRIRU8.027e-2642.36NADH-ubiquinone oxidoreductase chain 1 OS=Trichoph... [more]
NU1M_METSE8.027e-2637.97NADH-ubiquinone oxidoreductase chain 1 OS=Metridiu... [more]
NU1M_CHICK8.027e-2642.47NADH-ubiquinone oxidoreductase chain 1 OS=Gallus g... [more]
NUOH_WOLPM1.048e-2535.43NADH-quinone oxidoreductase subunit H OS=Wolbachia... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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