CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_CALFG (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Calycanthus floridus var. glaucus GN=ndhA PE=3 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 2.541e-80
Identity = 158/184 (85.87%), Postives = 165/184 (89.67%), Query Frame = 3 
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII T EVQ INSFSR ESL+EVY +LW+L PI   VL ITIGVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKE+LLPSRG+  LFSIGPSIAVI+ILLSY VIPF Y LVLADL IG+FLWIAISSIAPIGLLMSGYGSNNKYSF GGLRAAAQSISYEIPLT CVLSISL
Sbjct:    1 MIIDTTEVQAINSFSRSESLKEVYDLLWLLVPIFTPVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISILLSYSVIPFGYRLVLADLGIGVFLWIAISSIAPIGLLMSGYGSNNKYSFSGGLRAAAQSISYEIPLTPCVLSISL 184
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_DRANE (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Draba nemorosa GN=ndhA PE=3 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 3.318e-80
Identity = 156/184 (84.78%), Postives = 165/184 (89.67%), Query Frame = 3 
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII   EV+ INSF RLESL EVYG++W+  PI   VL I  GVLVIVWLER+ISAGIQQRIGPEYA PLGILQALADGTKLLFKE+L PSRGN+ LFSIGPSIAVI+ILLSY VIPFS +LVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIYATEVETINSFVRLESLNEVYGLVWIFVPIFSLVLGIITGVLVIVWLERQISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLRPSRGNTPLFSIGPSIAVISILLSYSVIPFSNHLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_CAPBU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Capsella bursa-pastoris GN=ndhA PE=3 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 4.333e-80
Identity = 155/184 (84.24%), Postives = 164/184 (89.13%), Query Frame = 3 
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII    VQ INSF +LESL+EVYG++W+  PI   VL I  GVLVIVWLEREISAGIQQRIGPEYA PLGILQALADG KLLFKENL PSRGN+ LFSIGPSIAVI+ILLSY VIPFS +L+LADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIYATAVQTINSFVKLESLKEVYGLIWIFVPIFFLVLGIITGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGIKLLFKENLRPSRGNTPLFSIGPSIAVISILLSYSVIPFSNHLILADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_ARATH (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Arabidopsis thaliana GN=ndhA PE=3 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 5.660e-80
Identity = 156/184 (84.78%), Postives = 164/184 (89.13%), Query Frame = 3 
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII    VQ INS  +LESL+EVYG++W+  PI   VL I  GVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKENL PSRGN+ LFSIGPSIAVI+ILLSY VIPFS +LVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIYATAVQTINSIVKLESLKEVYGLIWIFVPIFSLVLGIITGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLRPSRGNTPLFSIGPSIAVISILLSYSVIPFSNHLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_SOYBN (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Glycine max GN=ndhA PE=3 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 7.392e-80
Identity = 149/184 (80.98%), Postives = 164/184 (89.13%), Query Frame = 3 
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII   E+QDI+ F RLES +E+YGI+WV API I +L ITI VL IVWLEREISAGIQQRIGPEY  P G+LQALADGTKLLFKENL+PSRG+  LFSIGPSI+VI+I++SY VIPF YN VL+DLNIG+FLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIYLTEIQDIHFFFRLESFKEIYGIIWVFAPILILILGITISVLAIVWLEREISAGIQQRIGPEYTGPFGVLQALADGTKLLFKENLIPSRGDIRLFSIGPSISVISIIISYSVIPFGYNFVLSDLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_SOLTU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Solanum tuberosum GN=ndhA PE=3 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 1.261e-79
Identity = 152/184 (82.61%), Postives = 166/184 (90.22%), Query Frame = 3 
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII T E++ INSFS+LESL+EVYGI+W+L PI   VL ITIGVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLL KENL+PS G++ LFSIGPSIAVI+I LSY VIPF  +LVLADL+IG+F WIAISSIAP+GLLMSGYGSNNKYSFLGGLRAAAQSISYEIPL LCVLSISL
Sbjct:    1 MIIDTTEIETINSFSKLESLKEVYGIIWMLVPIVTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLLKENLIPSTGDTRLFSIGPSIAVISIFLSYSVIPFGDHLVLADLSIGVFFWIAISSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISL 184
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_SOLLC (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Solanum lycopersicum GN=ndhA PE=3 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 1.261e-79
Identity = 152/184 (82.61%), Postives = 166/184 (90.22%), Query Frame = 3 
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII T E++ INSFS+LESL+EVYGI+W+L PI   VL ITIGVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLL KENL+PS G++ LFSIGPSIAVI+I LSY VIPF  +LVLADL+IG+F WIAISSIAP+GLLMSGYGSNNKYSFLGGLRAAAQSISYEIPL LCVLSISL
Sbjct:    1 MIIDTTEIETINSFSKLESLKEVYGIIWMLVPIVTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLLKENLIPSTGDTRLFSIGPSIAVISIFLSYSVIPFGDHLVLADLSIGVFFWIAISSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISL 184
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_SOLBU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Solanum bulbocastanum GN=ndhA PE=3 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 1.261e-79
Identity = 152/184 (82.61%), Postives = 166/184 (90.22%), Query Frame = 3 
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII T E++ INSFS+LESL+EVYGI+W+L PI   VL ITIGVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLL KENL+PS G++ LFSIGPSIAVI+I LSY VIPF  +LVLADL+IG+F WIAISSIAP+GLLMSGYGSNNKYSFLGGLRAAAQSISYEIPL LCVLSISL
Sbjct:    1 MIIDTTEIETINSFSKLESLKEVYGIIWMLVPIVTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLLKENLIPSTGDTRLFSIGPSIAVISIFLSYSVIPFGDHLVLADLSIGVFFWIAISSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISL 184
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_JASNU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Jasminum nudiflorum GN=ndhA PE=3 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.647e-79
Identity = 151/184 (82.07%), Postives = 166/184 (90.22%), Query Frame = 3 
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +I  T E+Q I+SFSRLE L+EVYG +WVL PI   VL IT+GVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKENL PSRG++ LF+IGPSIAVI+ILLSY VIPF Y L+L DL+IG+FLWIA+SS+APIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    2 IIYNTTELQAIHSFSRLEFLKEVYGSIWVLIPILTLVLGITLGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLFPSRGDTRLFTIGPSIAVISILLSYSVIPFGYRLILGDLSIGVFLWIAVSSLAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 185
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_NICTO (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nicotiana tomentosiformis GN=ndhA PE=3 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 2.151e-79
Identity = 152/184 (82.61%), Postives = 166/184 (90.22%), Query Frame = 3 
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII T E++ INSFS+LESL+EVYGI+W+L PI   VL ITIGVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLL KENL+PS G++ LFSIGPSIAVI+I LSY VIPF  +LVLADL+IG+F WIAISSIAP+GLLMSGYGSNNKYSFLGGLRAAAQSISYEIPL LCVLSISL
Sbjct:    1 MIIDTTEIETINSFSKLESLKEVYGIIWMLFPIFTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLLKENLIPSTGDTRLFSIGPSIAVISIFLSYSVIPFGDHLVLADLSIGVFFWIAISSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISL 184
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1C_CALFG2.541e-8085.87NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_DRANE3.318e-8084.78NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_CAPBU4.333e-8084.24NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_ARATH5.660e-8084.78NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_SOYBN7.392e-8080.98NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_SOLTU1.261e-7982.61NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_SOLLC1.261e-7982.61NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_SOLBU1.261e-7982.61NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_JASNU1.647e-7982.07NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_NICTO2.151e-7982.61NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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