CK939407
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BURVG (NADH-quinone oxidoreductase subunit H OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=nuoH PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 8.875e-25 Identity = 57/156 (36.54%), Postives = 93/156 (59.62%), Query Frame = 3 Query: 150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 +W L I + + I + V ++ ER++ + R+GP P G+LQ +AD KLL KE + PS + L+ + P + V+ + VIPF VLA++N G+ +AISSI ++++G+ SN+KY+FLG +RAAAQ +SYEI + ++ + Sbjct: 22 VWALVRILVVAVVILLCVAYLILWERKLIGWMHVRLGPNRVGPAGLLQPIADVLKLLLKEVIQPSAASRWLYLVAPVMTVVPAFAVWAVIPFQAQAVLANVNAGLLYAMAISSIGVYAVILAGWASNSKYAFLGAMRAAAQMVSYEISMGFALVLV 177
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BURCM (NADH-quinone oxidoreductase subunit H OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=nuoH PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 8.875e-25 Identity = 65/166 (39.16%), Postives = 101/166 (60.84%), Query Frame = 3 Query: 135 EVYGILW--VLAPISIYVLAITIGVLV---IVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 ++ GI W V A + I V+A+ I + V I+W ER++ + R+GP P G+LQ +AD KLL KE + PS + L+ I P + V+ + VIPF VLA++N G+ +AISSI ++++G+ SN+KY+FLG +RAAAQ +SYEI + ++ + Sbjct: 13 QLLGIAWPTVWAIVRILVVAVVILLCVAYLILW-ERKLIGWMHVRLGPNRVGPAGLLQPIADVLKLLLKEVIQPSAASRWLYLIAPVMTVVPAFAVWAVIPFQAEAVLANVNAGLLYAMAISSIGVYAVILAGWASNSKYAFLGAMRAAAQMVSYEISMGFALVLV 177
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BURA4 (NADH-quinone oxidoreductase subunit H OS=Burkholderia ambifaria (strain MC40-6) GN=nuoH PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 8.875e-25 Identity = 65/166 (39.16%), Postives = 101/166 (60.84%), Query Frame = 3 Query: 135 EVYGILW--VLAPISIYVLAITIGVLV---IVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 ++ GI W V A + I V+A+ I + V I+W ER++ + R+GP P G+LQ +AD KLL KE + PS + L+ I P + V+ + VIPF VLA++N G+ +AISSI ++++G+ SN+KY+FLG +RAAAQ +SYEI + ++ + Sbjct: 13 QLLGIAWPTVWAIVRILVVAVVILLCVAYLILW-ERKLIGWMHVRLGPNRVGPAGLLQPIADVLKLLLKEVIQPSAASRWLYLIAPVMTVVPAFAVWAVIPFQAEAVLANVNAGLLYAMAISSIGVYAVILAGWASNSKYAFLGAMRAAAQMVSYEISMGFALVLV 177
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_SCYCA (NADH-ubiquinone oxidoreductase chain 1 OS=Scyliorhinus canicula GN=MT-ND1 PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 8.875e-25 Identity = 59/157 (37.58%), Postives = 100/157 (63.69%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 +L+++ P++ Y++ I + + +ER+I +Q R GP P G+LQ +ADG KL KE + PS + S F P++A+ LL ++ +P ++++ +LN+G+ +AISS+ +L SG+ SN+KY+ +G LRA AQ+ISYE+ L L +LS+ Sbjct: 6 LLYLINPLA-YIIPILLATAFLTLIERKILGYMQFRKGPNIVGPYGLLQPIADGLKLFIKEPIRPSASSRSYFLATPTVALALALLMWMPLPLPHSII--NLNLGLLFILAISSLTVYTILGSGWASNSKYALMGALRAVAQTISYEVSLGLILLSM 159
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_EQUAS (NADH-ubiquinone oxidoreductase chain 1 OS=Equus asinus GN=MT-ND1 PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 8.875e-25 Identity = 58/152 (38.16%), Postives = 94/152 (61.84%), Query Frame = 3 Query: 168 ISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 + + ++ I + V + +ER+I +Q R GP P G+LQ +AD KL KE L P ++S+F I P +A+ L ++ +P Y L+ ++N+GI +A+SS+A +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LS+ L Sbjct: 6 VLLLIIPILLAVAFLTLVERKILGYMQLRKGPNIVGPYGLLQPIADALKLFIKEPLQPLTSSTSMFIIAPILALTLALTMWIPLPMPYPLI--NMNLGILFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLL 155
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_XYLFM (NADH-quinone oxidoreductase subunit H OS=Xylella fastidiosa (strain M12) GN=nuoH PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.159e-24 Identity = 55/159 (34.59%), Postives = 97/159 (61.01%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 +LW + I + + + + V V ER++ + R GP Y +G+ QA AD KLLFKE L PS+ + +F I P + + ++ V+PF LVL++ N+G+ +A++S+ G++++G+ SN+KY+FLG +R+AAQ +SYEI + ++ + + Sbjct: 25 VLWTVLKILMIAIPLIVSVAFYVVWERKLIGWMHVRHGPMYVG-MGLFQAFADVFKLLFKEVLYPSKAHKVIFVIAPLLTLAPSFAAWAVVPFDTKLVLSNANVGLLYLLAMTSLGVYGIILAGWASNSKYAFLGAMRSAAQVVSYEIAMGFALVGVMI 182
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_XANOR (NADH-quinone oxidoreductase subunit H OS=Xanthomonas oryzae pv. oryzae GN=nuoH PE=3 SV=2) HSP 1 Score: 114.005 bits (284), Expect = 1.159e-24 Identity = 56/159 (35.22%), Postives = 97/159 (61.01%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 +LW + I + + + + V V ER++ + R GP Y +GI QA AD KLLFKE L PS + ++F I P + + ++ V+PF LVL++ N+G+ +A++S+ G++++G+ SN+KY+FLG +R+AAQ +SYEI + ++ + + Sbjct: 25 VLWSVLKILLIAVPVIVSVAFYVVWERKLIGWMHVRHGPMYVG-MGIFQAFADVFKLLFKEILQPSSSHKAMFIIAPLLTLAPAFAAWSVVPFDAKLVLSNANVGLLYLLAMTSLGVYGIILAGWASNSKYAFLGAMRSAAQVVSYEIAMGFALVGVMI 182
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_XANOP (NADH-quinone oxidoreductase subunit H OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=nuoH PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.159e-24 Identity = 56/159 (35.22%), Postives = 97/159 (61.01%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 +LW + I + + + + V V ER++ + R GP Y +GI QA AD KLLFKE L PS + ++F I P + + ++ V+PF LVL++ N+G+ +A++S+ G++++G+ SN+KY+FLG +R+AAQ +SYEI + ++ + + Sbjct: 25 VLWSVLKILLIAVPVIVSVAFYVVWERKLIGWMHVRHGPMYVG-MGIFQAFADVFKLLFKEILQPSSSHKAMFIIAPLLTLAPAFAAWSVVPFDAKLVLSNANVGLLYLLAMTSLGVYGIILAGWASNSKYAFLGAMRSAAQVVSYEIAMGFALVGVMI 182
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_XANOM (NADH-quinone oxidoreductase subunit H OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=nuoH PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.159e-24 Identity = 56/159 (35.22%), Postives = 97/159 (61.01%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 +LW + I + + + + V V ER++ + R GP Y +GI QA AD KLLFKE L PS + ++F I P + + ++ V+PF LVL++ N+G+ +A++S+ G++++G+ SN+KY+FLG +R+AAQ +SYEI + ++ + + Sbjct: 25 VLWSVLKILLIAVPVIVSVAFYVVWERKLIGWMHVRHGPMYVG-MGIFQAFADVFKLLFKEILQPSSSHKAMFIIAPLLTLAPAFAAWSVVPFDAKLVLSNANVGLLYLLAMTSLGVYGIILAGWASNSKYAFLGAMRSAAQVVSYEIAMGFALVGVMI 182
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_SALTY (NADH-quinone oxidoreductase subunit H OS=Salmonella typhimurium GN=nuoH PE=3 SV=2) HSP 1 Score: 114.005 bits (284), Expect = 1.159e-24 Identity = 59/157 (37.58%), Postives = 97/157 (61.78%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 +L +L + I ++ +T G + ER + Q R GP G LQ +AD K+ FKE+ +P + +F++ P IA ++LLS+ ++P S N V+ADLNIGI ++ ++ +A +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ + Sbjct: 12 LLSILKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLSFAIVPVSPNWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTVSYEVFLGLSLMGV 167 The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bpback to top |