CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BURVG (NADH-quinone oxidoreductase subunit H OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=nuoH PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.875e-25
Identity = 57/156 (36.54%), Postives = 93/156 (59.62%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +W L  I +  + I + V  ++  ER++   +  R+GP    P G+LQ +AD  KLL KE + PS  +  L+ + P + V+     + VIPF    VLA++N G+   +AISSI    ++++G+ SN+KY+FLG +RAAAQ +SYEI +   ++ +
Sbjct:   22 VWALVRILVVAVVILLCVAYLILWERKLIGWMHVRLGPNRVGPAGLLQPIADVLKLLLKEVIQPSAASRWLYLVAPVMTVVPAFAVWAVIPFQAQAVLANVNAGLLYAMAISSIGVYAVILAGWASNSKYAFLGAMRAAAQMVSYEISMGFALVLV 177          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BURCM (NADH-quinone oxidoreductase subunit H OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=nuoH PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.875e-25
Identity = 65/166 (39.16%), Postives = 101/166 (60.84%), Query Frame = 3
Query:  135 EVYGILW--VLAPISIYVLAITIGVLV---IVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            ++ GI W  V A + I V+A+ I + V   I+W ER++   +  R+GP    P G+LQ +AD  KLL KE + PS  +  L+ I P + V+     + VIPF    VLA++N G+   +AISSI    ++++G+ SN+KY+FLG +RAAAQ +SYEI +   ++ +
Sbjct:   13 QLLGIAWPTVWAIVRILVVAVVILLCVAYLILW-ERKLIGWMHVRLGPNRVGPAGLLQPIADVLKLLLKEVIQPSAASRWLYLIAPVMTVVPAFAVWAVIPFQAEAVLANVNAGLLYAMAISSIGVYAVILAGWASNSKYAFLGAMRAAAQMVSYEISMGFALVLV 177          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BURA4 (NADH-quinone oxidoreductase subunit H OS=Burkholderia ambifaria (strain MC40-6) GN=nuoH PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.875e-25
Identity = 65/166 (39.16%), Postives = 101/166 (60.84%), Query Frame = 3
Query:  135 EVYGILW--VLAPISIYVLAITIGVLV---IVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            ++ GI W  V A + I V+A+ I + V   I+W ER++   +  R+GP    P G+LQ +AD  KLL KE + PS  +  L+ I P + V+     + VIPF    VLA++N G+   +AISSI    ++++G+ SN+KY+FLG +RAAAQ +SYEI +   ++ +
Sbjct:   13 QLLGIAWPTVWAIVRILVVAVVILLCVAYLILW-ERKLIGWMHVRLGPNRVGPAGLLQPIADVLKLLLKEVIQPSAASRWLYLIAPVMTVVPAFAVWAVIPFQAEAVLANVNAGLLYAMAISSIGVYAVILAGWASNSKYAFLGAMRAAAQMVSYEISMGFALVLV 177          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_SCYCA (NADH-ubiquinone oxidoreductase chain 1 OS=Scyliorhinus canicula GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.875e-25
Identity = 59/157 (37.58%), Postives = 100/157 (63.69%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L+++ P++ Y++ I +    +  +ER+I   +Q R GP    P G+LQ +ADG KL  KE + PS  + S F   P++A+   LL ++ +P  ++++  +LN+G+   +AISS+    +L SG+ SN+KY+ +G LRA AQ+ISYE+ L L +LS+
Sbjct:    6 LLYLINPLA-YIIPILLATAFLTLIERKILGYMQFRKGPNIVGPYGLLQPIADGLKLFIKEPIRPSASSRSYFLATPTVALALALLMWMPLPLPHSII--NLNLGLLFILAISSLTVYTILGSGWASNSKYALMGALRAVAQTISYEVSLGLILLSM 159          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_EQUAS (NADH-ubiquinone oxidoreductase chain 1 OS=Equus asinus GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.875e-25
Identity = 58/152 (38.16%), Postives = 94/152 (61.84%), Query Frame = 3
Query:  168 ISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            + + ++ I + V  +  +ER+I   +Q R GP    P G+LQ +AD  KL  KE L P   ++S+F I P +A+   L  ++ +P  Y L+  ++N+GI   +A+SS+A   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LS+ L
Sbjct:    6 VLLLIIPILLAVAFLTLVERKILGYMQLRKGPNIVGPYGLLQPIADALKLFIKEPLQPLTSSTSMFIIAPILALTLALTMWIPLPMPYPLI--NMNLGILFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLL 155          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_XYLFM (NADH-quinone oxidoreductase subunit H OS=Xylella fastidiosa (strain M12) GN=nuoH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.159e-24
Identity = 55/159 (34.59%), Postives = 97/159 (61.01%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +LW +  I +  + + + V   V  ER++   +  R GP Y   +G+ QA AD  KLLFKE L PS+ +  +F I P + +     ++ V+PF   LVL++ N+G+   +A++S+   G++++G+ SN+KY+FLG +R+AAQ +SYEI +   ++ + +
Sbjct:   25 VLWTVLKILMIAIPLIVSVAFYVVWERKLIGWMHVRHGPMYVG-MGLFQAFADVFKLLFKEVLYPSKAHKVIFVIAPLLTLAPSFAAWAVVPFDTKLVLSNANVGLLYLLAMTSLGVYGIILAGWASNSKYAFLGAMRSAAQVVSYEIAMGFALVGVMI 182          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_XANOR (NADH-quinone oxidoreductase subunit H OS=Xanthomonas oryzae pv. oryzae GN=nuoH PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.159e-24
Identity = 56/159 (35.22%), Postives = 97/159 (61.01%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +LW +  I +  + + + V   V  ER++   +  R GP Y   +GI QA AD  KLLFKE L PS  + ++F I P + +     ++ V+PF   LVL++ N+G+   +A++S+   G++++G+ SN+KY+FLG +R+AAQ +SYEI +   ++ + +
Sbjct:   25 VLWSVLKILLIAVPVIVSVAFYVVWERKLIGWMHVRHGPMYVG-MGIFQAFADVFKLLFKEILQPSSSHKAMFIIAPLLTLAPAFAAWSVVPFDAKLVLSNANVGLLYLLAMTSLGVYGIILAGWASNSKYAFLGAMRSAAQVVSYEIAMGFALVGVMI 182          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_XANOP (NADH-quinone oxidoreductase subunit H OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=nuoH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.159e-24
Identity = 56/159 (35.22%), Postives = 97/159 (61.01%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +LW +  I +  + + + V   V  ER++   +  R GP Y   +GI QA AD  KLLFKE L PS  + ++F I P + +     ++ V+PF   LVL++ N+G+   +A++S+   G++++G+ SN+KY+FLG +R+AAQ +SYEI +   ++ + +
Sbjct:   25 VLWSVLKILLIAVPVIVSVAFYVVWERKLIGWMHVRHGPMYVG-MGIFQAFADVFKLLFKEILQPSSSHKAMFIIAPLLTLAPAFAAWSVVPFDAKLVLSNANVGLLYLLAMTSLGVYGIILAGWASNSKYAFLGAMRSAAQVVSYEIAMGFALVGVMI 182          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_XANOM (NADH-quinone oxidoreductase subunit H OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=nuoH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.159e-24
Identity = 56/159 (35.22%), Postives = 97/159 (61.01%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +LW +  I +  + + + V   V  ER++   +  R GP Y   +GI QA AD  KLLFKE L PS  + ++F I P + +     ++ V+PF   LVL++ N+G+   +A++S+   G++++G+ SN+KY+FLG +R+AAQ +SYEI +   ++ + +
Sbjct:   25 VLWSVLKILLIAVPVIVSVAFYVVWERKLIGWMHVRHGPMYVG-MGIFQAFADVFKLLFKEILQPSSSHKAMFIIAPLLTLAPAFAAWSVVPFDAKLVLSNANVGLLYLLAMTSLGVYGIILAGWASNSKYAFLGAMRSAAQVVSYEIAMGFALVGVMI 182          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_SALTY (NADH-quinone oxidoreductase subunit H OS=Salmonella typhimurium GN=nuoH PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.159e-24
Identity = 59/157 (37.58%), Postives = 97/157 (61.78%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L +L  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   +  +F++ P IA  ++LLS+ ++P S N V+ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LLSILKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLSFAIVPVSPNWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTVSYEVFLGLSLMGV 167          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOH_BURVG8.875e-2536.54NADH-quinone oxidoreductase subunit H OS=Burkholde... [more]
NUOH_BURCM8.875e-2539.16NADH-quinone oxidoreductase subunit H OS=Burkholde... [more]
NUOH_BURA48.875e-2539.16NADH-quinone oxidoreductase subunit H OS=Burkholde... [more]
NU1M_SCYCA8.875e-2537.58NADH-ubiquinone oxidoreductase chain 1 OS=Scyliorh... [more]
NU1M_EQUAS8.875e-2538.16NADH-ubiquinone oxidoreductase chain 1 OS=Equus as... [more]
NUOH_XYLFM1.159e-2434.59NADH-quinone oxidoreductase subunit H OS=Xylella f... [more]
NUOH_XANOR1.159e-2435.22NADH-quinone oxidoreductase subunit H OS=Xanthomon... [more]
NUOH_XANOP1.159e-2435.22NADH-quinone oxidoreductase subunit H OS=Xanthomon... [more]
NUOH_XANOM1.159e-2435.22NADH-quinone oxidoreductase subunit H OS=Xanthomon... [more]
NUOH_SALTY1.159e-2437.58NADH-quinone oxidoreductase subunit H OS=Salmonell... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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