CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_SALPC (NADH-quinone oxidoreductase subunit H OS=Salmonella paratyphi C (strain RKS4594) GN=nuoH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.159e-24
Identity = 59/157 (37.58%), Postives = 97/157 (61.78%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L +L  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   +  +F++ P IA  ++LLS+ ++P S N V+ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LLSILKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLSFAIVPVSPNWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTVSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_SALPB (NADH-quinone oxidoreductase subunit H OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=nuoH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.159e-24
Identity = 59/157 (37.58%), Postives = 97/157 (61.78%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L +L  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   +  +F++ P IA  ++LLS+ ++P S N V+ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LLSILKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLSFAIVPVSPNWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTVSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_SALPA (NADH-quinone oxidoreductase subunit H OS=Salmonella paratyphi A GN=nuoH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.159e-24
Identity = 59/157 (37.58%), Postives = 97/157 (61.78%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L +L  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   +  +F++ P IA  ++LLS+ ++P S N V+ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LLSILKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLSFAIVPVSPNWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTVSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_SALNS (NADH-quinone oxidoreductase subunit H OS=Salmonella newport (strain SL254) GN=nuoH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.159e-24
Identity = 59/157 (37.58%), Postives = 97/157 (61.78%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L +L  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   +  +F++ P IA  ++LLS+ ++P S N V+ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LLSILKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLSFAIVPVSPNWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTVSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_SALDC (NADH-quinone oxidoreductase subunit H OS=Salmonella dublin (strain CT_02021853) GN=nuoH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.159e-24
Identity = 59/157 (37.58%), Postives = 97/157 (61.78%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L +L  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   +  +F++ P IA  ++LLS+ ++P S N V+ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LLSILKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLSFAIVPVSPNWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTVSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_SALCH (NADH-quinone oxidoreductase subunit H OS=Salmonella choleraesuis GN=nuoH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.159e-24
Identity = 59/157 (37.58%), Postives = 97/157 (61.78%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L +L  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   +  +F++ P IA  ++LLS+ ++P S N V+ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LLSILKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLSFAIVPVSPNWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTVSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_SALA4 (NADH-quinone oxidoreductase subunit H OS=Salmonella agona (strain SL483) GN=nuoH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.159e-24
Identity = 59/157 (37.58%), Postives = 97/157 (61.78%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L +L  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   +  +F++ P IA  ++LLS+ ++P S N V+ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LLSILKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLSFAIVPVSPNWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTVSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_RALSO (NADH-quinone oxidoreductase subunit H OS=Ralstonia solanacearum GN=nuoH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.159e-24
Identity = 52/157 (33.12%), Postives = 98/157 (62.42%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            ++W L      +L + + V  ++  ER++   +  R+GP    P+G+LQ +AD  KLL KE ++PS  +  ++ I P + ++  +  + V+PF    V++++N G+   +AISS+   G++++G+ SN+KY+FLG +RA+AQ ISYEI +   ++++
Sbjct:   19 LIWTLVRAVCIILPLLLCVAYLILWERKLIGWMHVRVGPNRVGPMGLLQPIADVLKLLLKEVMVPSAVSRGMYIIAPLMVLMPAVAIWAVVPFQAEAVVSNINAGLLYVMAISSVGVYGVILAGWASNSKYAFLGAMRASAQMISYEIAMGFALVTV 175          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_NOCSJ (NADH-quinone oxidoreductase subunit H OS=Nocardioides sp. (strain BAA-499 / JS614) GN=nuoH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.159e-24
Identity = 58/169 (34.32%), Postives = 99/169 (58.58%), Query Frame = 3
Query:  153 WVLAPISIYVLAITIGVLVI-VWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYN-----------LVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            WV+   ++ +L + + + +  +W ER +   +Q R GP    P G+LQ+LAD  KL+FKE ++P   + +++ I P IAVI   +++ VIPF              L L D+ + +   +AI+SI   G+++ G+ S + YS LGGLR++AQ ISYE+ + L ++++ L
Sbjct:   24 WVIGLKAVLILVVLLLLTLFNIWFERRVVGRMQHRPGPNVNGPFGLLQSLADALKLIFKEGIIPKAADKAVYLIAPVIAVIPSFITFSVIPFGPEVTIPFTDTRTPLQLTDMPVAVLFVMAIASIGIYGIVLGGWSSGSTYSLLGGLRSSAQMISYEVAMGLALVAVFL 192          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_LEPBP (NADH-quinone oxidoreductase subunit H OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=nuoH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.159e-24
Identity = 59/174 (33.91%), Postives = 102/174 (58.62%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPF-----------------SYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            + W +  +S++ + +T GV      ER+ +  IQ R GP  A P GI Q LADG K + KE + P   +  ++ + P+I++   ++++ VIPF                 + +L +A+ + G+   +AISS++  G++++G+ SNNKYS LGG+R+ AQ ISYE+P+ L +++I
Sbjct:    7 LAWGIKILSLFFVILT-GVAYYTLAERKFAGFIQDRPGPNRAGPFGIFQPLADGIKFIAKEEIFPKNVSKGMYLLAPTISMTCAIMAWAVIPFGGTLPAPEWLTTLTGVATIDLQIANPDSGVLYMLAISSLSVYGIMIAGWSSNNKYSLLGGVRSTAQMISYELPMGLSIVAI 179          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOH_SALPC1.159e-2437.58NADH-quinone oxidoreductase subunit H OS=Salmonell... [more]
NUOH_SALPB1.159e-2437.58NADH-quinone oxidoreductase subunit H OS=Salmonell... [more]
NUOH_SALPA1.159e-2437.58NADH-quinone oxidoreductase subunit H OS=Salmonell... [more]
NUOH_SALNS1.159e-2437.58NADH-quinone oxidoreductase subunit H OS=Salmonell... [more]
NUOH_SALDC1.159e-2437.58NADH-quinone oxidoreductase subunit H OS=Salmonell... [more]
NUOH_SALCH1.159e-2437.58NADH-quinone oxidoreductase subunit H OS=Salmonell... [more]
NUOH_SALA41.159e-2437.58NADH-quinone oxidoreductase subunit H OS=Salmonell... [more]
NUOH_RALSO1.159e-2433.12NADH-quinone oxidoreductase subunit H OS=Ralstonia... [more]
NUOH_NOCSJ1.159e-2434.32NADH-quinone oxidoreductase subunit H OS=Nocardioi... [more]
NUOH_LEPBP1.159e-2433.91NADH-quinone oxidoreductase subunit H OS=Leptospir... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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