CK939407
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_LEPBA (NADH-quinone oxidoreductase subunit H OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=nuoH PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.159e-24 Identity = 59/174 (33.91%), Postives = 102/174 (58.62%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPF-----------------SYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 + W + +S++ + +T GV ER+ + IQ R GP A P GI Q LADG K + KE + P + ++ + P+I++ ++++ VIPF + +L +A+ + G+ +AISS++ G++++G+ SNNKYS LGG+R+ AQ ISYE+P+ L +++I Sbjct: 7 LAWGIKILSLFFVILT-GVAYYTLAERKFAGFIQDRPGPNRAGPFGIFQPLADGIKFIAKEEIFPKNVSKGMYLLAPTISMTCAIMAWAVIPFGGTLPAPEWLTTLTGVATIDLQIANPDSGVLYMLAISSLSVYGIMIAGWSSNNKYSLLGGVRSTAQMISYELPMGLSIVAI 179
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_ALHEH (NADH-quinone oxidoreductase subunit H OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=nuoH PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.159e-24 Identity = 54/157 (34.39%), Postives = 93/157 (59.24%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 + W+ I V+ + + V + + ER + +Q R GP G+LQ +AD KL+ KE +PS N LF I P +A++ L ++ VIP + +AD+N G+ +A++S+ G++++G+ SN+KY+ LG LRA+AQ +SYEI + ++ + Sbjct: 7 LFWITLKIMALVVPLMLAVAYLTYAERRVIGAMQDRRGPNRVGYQGLLQPIADALKLVMKEISIPSNANRVLFVIAPLLAIMPALAAWAVIPVAEGWAIADINAGLLYILAMTSLGVYGIIIAGWASNSKYALLGTLRASAQVVSYEIAMGFALVGV 163
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_XENLA (NADH-ubiquinone oxidoreductase chain 1 OS=Xenopus laevis GN=mt-nd1 PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.159e-24 Identity = 57/146 (39.04%), Postives = 93/146 (63.70%), Query Frame = 3 Query: 174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 611 +Y++ I + V + +ER++ +Q R GP P G++Q +ADG KL KE + PS + ++F I P++A+ + + +P ++ LADLN+GI +A+SS+A +L SG+ SN+KY+ +G LRA AQ+ISYE+ L L +L Sbjct: 13 LYMIPILLAVAFLTLIERKVLGYMQHRKGPNIVGPTGLIQPIADGVKLFIKEPVRPSTSSQTMFLIAPTMALALAMSIWAPLPMPFS--LADLNLGILFILALSSLAVYTILGSGWSSNSKYALIGALRAVAQTISYEVTLGLILL 156
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_MYXGL (NADH-ubiquinone oxidoreductase chain 1 OS=Myxine glutinosa GN=MT-ND1 PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.159e-24 Identity = 58/145 (40.00%), Postives = 92/145 (63.45%), Query Frame = 3 Query: 189 ITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 I I V + +ER++ +Q R GP P G+LQ ADG KL KE L PS + LF + P++A+ L+ ++ +P L L+D+N+G+ +AISS++ LL SG+ SN+KY+ +G LRA AQ+ISYE+ L L ++++++ Sbjct: 15 ILIAVAFLTLIERKVLGYMQLRKGPNIVGPFGLLQPFADGIKLFIKEPLQPSYASIFLFILAPALAISLALILWISLPLP--LALSDMNLGLMFILAISSLSVYSLLTSGWASNSKYALMGALRAVAQTISYEVTLGLMIVALTI 157
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_XANCP (NADH-quinone oxidoreductase subunit H OS=Xanthomonas campestris pv. campestris GN=nuoH PE=3 SV=2) HSP 1 Score: 113.62 bits (283), Expect = 1.514e-24 Identity = 56/159 (35.22%), Postives = 97/159 (61.01%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 +LW + I + + + + V V ER++ + R GP Y +GI QA AD KLLFKE L PS + ++F I P + + ++ V+PF LVL++ N+G+ +A++S+ G++++G+ SN+KY+FLG +R+AAQ +SYEI + ++ + + Sbjct: 25 LLWTVLKILLIAVPVIVTVAFYVVWERKLIGWMHVRHGPMYVG-MGIFQAFADVFKLLFKEILQPSSSHKAMFIIAPLLTLAPAFAAWSVVPFDAKLVLSNANVGLLYLLAMTSLGVYGIILAGWASNSKYAFLGAMRSAAQVVSYEIAMGFALVGVMI 182
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_XANCB (NADH-quinone oxidoreductase subunit H OS=Xanthomonas campestris pv. campestris (strain B100) GN=nuoH PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.514e-24 Identity = 56/159 (35.22%), Postives = 97/159 (61.01%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 +LW + I + + + + V V ER++ + R GP Y +GI QA AD KLLFKE L PS + ++F I P + + ++ V+PF LVL++ N+G+ +A++S+ G++++G+ SN+KY+FLG +R+AAQ +SYEI + ++ + + Sbjct: 25 LLWTVLKILLIAVPVIVTVAFYVVWERKLIGWMHVRHGPMYVG-MGIFQAFADVFKLLFKEILQPSSSHKAMFIIAPLLTLAPAFAAWSVVPFDAKLVLSNANVGLLYLLAMTSLGVYGIILAGWASNSKYAFLGAMRSAAQVVSYEIAMGFALVGVMI 182
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_XANC8 (NADH-quinone oxidoreductase subunit H OS=Xanthomonas campestris pv. campestris (strain 8004) GN=nuoH PE=3 SV=2) HSP 1 Score: 113.62 bits (283), Expect = 1.514e-24 Identity = 56/159 (35.22%), Postives = 97/159 (61.01%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 +LW + I + + + + V V ER++ + R GP Y +GI QA AD KLLFKE L PS + ++F I P + + ++ V+PF LVL++ N+G+ +A++S+ G++++G+ SN+KY+FLG +R+AAQ +SYEI + ++ + + Sbjct: 25 LLWTVLKILLIAVPVIVTVAFYVVWERKLIGWMHVRHGPMYVG-MGIFQAFADVFKLLFKEILQPSSSHKAMFIIAPLLTLAPAFAAWSVVPFDAKLVLSNANVGLLYLLAMTSLGVYGIILAGWASNSKYAFLGAMRSAAQVVSYEIAMGFALVGVMI 182
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_SALAR (NADH-quinone oxidoreductase subunit H OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=nuoH PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.514e-24 Identity = 59/157 (37.58%), Postives = 97/157 (61.78%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 +L +L + I ++ +T G + ER + Q R GP G LQ +AD K+ FKE+ +P + +F++ P IA ++LLS+ ++P S N V+ADLNIGI ++ ++ +A +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ + Sbjct: 12 LLSILKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPKFSDRVIFTLAPMIAFTSLLLSFAIVPVSPNWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTVSYEVFLGLSLMGV 167
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_PSEPK (NADH-quinone oxidoreductase subunit H OS=Pseudomonas putida (strain KT2440) GN=nuoH PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.514e-24 Identity = 63/182 (34.62%), Postives = 106/182 (58.24%), Query Frame = 3 Query: 84 TPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629 TPEV D+ IL VL I + + + G L + ++ER + Q R GP P G+ Q AD K+ FKE+ P + +F++ P +A+ A+L++++VIP + +ADLNIG+ + A++ ++ +L +G+ SNNKY+ LG LRA+AQ++SYE+ L L ++ + ++V Sbjct: 5 TPEVIDV--------------ILTVLRAIVVLLAVVVCGAL-LSFVERRLLGWWQDRYGPNRVGPFGMFQIAADMLKMFFKEDWNPPFVDRVIFTLAPVVAMSALLIAFVVIPITPTWGVADLNIGLLFFFAMAGLSVYAVLFAGWSSNNKYALLGSLRASAQTVSYEVFLGLALMGVVVQV 171
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_PSEPF (NADH-quinone oxidoreductase subunit H OS=Pseudomonas fluorescens (strain Pf0-1) GN=nuoH PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.514e-24 Identity = 53/165 (32.12%), Postives = 101/165 (61.21%), Query Frame = 3 Query: 135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629 EV ++ + + +LA+ + ++ ++ER + Q R GP P G+ Q AD K+ FKE+ P + +F++ P +A+ A+L+++ +IP + +ADLNIG+ + A++ ++ +L +G+ SNNK++ LG LRA+AQ++SYE+ + L ++ I ++V Sbjct: 7 EVIDVILTVIKAIVILLAVVVAGALLSFVERRLLGWWQDRYGPNRVGPFGMFQIAADMLKMFFKEDWTPPFADKVIFTLAPVVAMSALLIAFAIIPITPTWGVADLNIGLLFFFAMAGLSVYAVLFAGWSSNNKFALLGSLRASAQTVSYEVFMGLALMGIVVQV 171 The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bpback to top |