CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_LEPBA (NADH-quinone oxidoreductase subunit H OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=nuoH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.159e-24
Identity = 59/174 (33.91%), Postives = 102/174 (58.62%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPF-----------------SYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            + W +  +S++ + +T GV      ER+ +  IQ R GP  A P GI Q LADG K + KE + P   +  ++ + P+I++   ++++ VIPF                 + +L +A+ + G+   +AISS++  G++++G+ SNNKYS LGG+R+ AQ ISYE+P+ L +++I
Sbjct:    7 LAWGIKILSLFFVILT-GVAYYTLAERKFAGFIQDRPGPNRAGPFGIFQPLADGIKFIAKEEIFPKNVSKGMYLLAPTISMTCAIMAWAVIPFGGTLPAPEWLTTLTGVATIDLQIANPDSGVLYMLAISSLSVYGIMIAGWSSNNKYSLLGGVRSTAQMISYELPMGLSIVAI 179          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_ALHEH (NADH-quinone oxidoreductase subunit H OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=nuoH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.159e-24
Identity = 54/157 (34.39%), Postives = 93/157 (59.24%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            + W+   I   V+ + + V  + + ER +   +Q R GP      G+LQ +AD  KL+ KE  +PS  N  LF I P +A++  L ++ VIP +    +AD+N G+   +A++S+   G++++G+ SN+KY+ LG LRA+AQ +SYEI +   ++ +
Sbjct:    7 LFWITLKIMALVVPLMLAVAYLTYAERRVIGAMQDRRGPNRVGYQGLLQPIADALKLVMKEISIPSNANRVLFVIAPLLAIMPALAAWAVIPVAEGWAIADINAGLLYILAMTSLGVYGIIIAGWASNSKYALLGTLRASAQVVSYEIAMGFALVGV 163          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_XENLA (NADH-ubiquinone oxidoreductase chain 1 OS=Xenopus laevis GN=mt-nd1 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.159e-24
Identity = 57/146 (39.04%), Postives = 93/146 (63.70%), Query Frame = 3
Query:  174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 611
            +Y++ I + V  +  +ER++   +Q R GP    P G++Q +ADG KL  KE + PS  + ++F I P++A+   +  +  +P  ++  LADLN+GI   +A+SS+A   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L L +L
Sbjct:   13 LYMIPILLAVAFLTLIERKVLGYMQHRKGPNIVGPTGLIQPIADGVKLFIKEPVRPSTSSQTMFLIAPTMALALAMSIWAPLPMPFS--LADLNLGILFILALSSLAVYTILGSGWSSNSKYALIGALRAVAQTISYEVTLGLILL 156          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_MYXGL (NADH-ubiquinone oxidoreductase chain 1 OS=Myxine glutinosa GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.159e-24
Identity = 58/145 (40.00%), Postives = 92/145 (63.45%), Query Frame = 3
Query:  189 ITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            I I V  +  +ER++   +Q R GP    P G+LQ  ADG KL  KE L PS  +  LF + P++A+   L+ ++ +P    L L+D+N+G+   +AISS++   LL SG+ SN+KY+ +G LRA AQ+ISYE+ L L ++++++
Sbjct:   15 ILIAVAFLTLIERKVLGYMQLRKGPNIVGPFGLLQPFADGIKLFIKEPLQPSYASIFLFILAPALAISLALILWISLPLP--LALSDMNLGLMFILAISSLSVYSLLTSGWASNSKYALMGALRAVAQTISYEVTLGLMIVALTI 157          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_XANCP (NADH-quinone oxidoreductase subunit H OS=Xanthomonas campestris pv. campestris GN=nuoH PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.514e-24
Identity = 56/159 (35.22%), Postives = 97/159 (61.01%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +LW +  I +  + + + V   V  ER++   +  R GP Y   +GI QA AD  KLLFKE L PS  + ++F I P + +     ++ V+PF   LVL++ N+G+   +A++S+   G++++G+ SN+KY+FLG +R+AAQ +SYEI +   ++ + +
Sbjct:   25 LLWTVLKILLIAVPVIVTVAFYVVWERKLIGWMHVRHGPMYVG-MGIFQAFADVFKLLFKEILQPSSSHKAMFIIAPLLTLAPAFAAWSVVPFDAKLVLSNANVGLLYLLAMTSLGVYGIILAGWASNSKYAFLGAMRSAAQVVSYEIAMGFALVGVMI 182          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_XANCB (NADH-quinone oxidoreductase subunit H OS=Xanthomonas campestris pv. campestris (strain B100) GN=nuoH PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.514e-24
Identity = 56/159 (35.22%), Postives = 97/159 (61.01%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +LW +  I +  + + + V   V  ER++   +  R GP Y   +GI QA AD  KLLFKE L PS  + ++F I P + +     ++ V+PF   LVL++ N+G+   +A++S+   G++++G+ SN+KY+FLG +R+AAQ +SYEI +   ++ + +
Sbjct:   25 LLWTVLKILLIAVPVIVTVAFYVVWERKLIGWMHVRHGPMYVG-MGIFQAFADVFKLLFKEILQPSSSHKAMFIIAPLLTLAPAFAAWSVVPFDAKLVLSNANVGLLYLLAMTSLGVYGIILAGWASNSKYAFLGAMRSAAQVVSYEIAMGFALVGVMI 182          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_XANC8 (NADH-quinone oxidoreductase subunit H OS=Xanthomonas campestris pv. campestris (strain 8004) GN=nuoH PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.514e-24
Identity = 56/159 (35.22%), Postives = 97/159 (61.01%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +LW +  I +  + + + V   V  ER++   +  R GP Y   +GI QA AD  KLLFKE L PS  + ++F I P + +     ++ V+PF   LVL++ N+G+   +A++S+   G++++G+ SN+KY+FLG +R+AAQ +SYEI +   ++ + +
Sbjct:   25 LLWTVLKILLIAVPVIVTVAFYVVWERKLIGWMHVRHGPMYVG-MGIFQAFADVFKLLFKEILQPSSSHKAMFIIAPLLTLAPAFAAWSVVPFDAKLVLSNANVGLLYLLAMTSLGVYGIILAGWASNSKYAFLGAMRSAAQVVSYEIAMGFALVGVMI 182          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_SALAR (NADH-quinone oxidoreductase subunit H OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=nuoH PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.514e-24
Identity = 59/157 (37.58%), Postives = 97/157 (61.78%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L +L  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   +  +F++ P IA  ++LLS+ ++P S N V+ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LLSILKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPKFSDRVIFTLAPMIAFTSLLLSFAIVPVSPNWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTVSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_PSEPK (NADH-quinone oxidoreductase subunit H OS=Pseudomonas putida (strain KT2440) GN=nuoH PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.514e-24
Identity = 63/182 (34.62%), Postives = 106/182 (58.24%), Query Frame = 3
Query:   84 TPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            TPEV D+              IL VL  I + +  +  G L + ++ER +    Q R GP    P G+ Q  AD  K+ FKE+  P   +  +F++ P +A+ A+L++++VIP +    +ADLNIG+  + A++ ++   +L +G+ SNNKY+ LG LRA+AQ++SYE+ L L ++ + ++V
Sbjct:    5 TPEVIDV--------------ILTVLRAIVVLLAVVVCGAL-LSFVERRLLGWWQDRYGPNRVGPFGMFQIAADMLKMFFKEDWNPPFVDRVIFTLAPVVAMSALLIAFVVIPITPTWGVADLNIGLLFFFAMAGLSVYAVLFAGWSSNNKYALLGSLRASAQTVSYEVFLGLALMGVVVQV 171          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_PSEPF (NADH-quinone oxidoreductase subunit H OS=Pseudomonas fluorescens (strain Pf0-1) GN=nuoH PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.514e-24
Identity = 53/165 (32.12%), Postives = 101/165 (61.21%), Query Frame = 3
Query:  135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            EV  ++  +    + +LA+ +   ++ ++ER +    Q R GP    P G+ Q  AD  K+ FKE+  P   +  +F++ P +A+ A+L+++ +IP +    +ADLNIG+  + A++ ++   +L +G+ SNNK++ LG LRA+AQ++SYE+ + L ++ I ++V
Sbjct:    7 EVIDVILTVIKAIVILLAVVVAGALLSFVERRLLGWWQDRYGPNRVGPFGMFQIAADMLKMFFKEDWTPPFADKVIFTLAPVVAMSALLIAFAIIPITPTWGVADLNIGLLFFFAMAGLSVYAVLFAGWSSNNKFALLGSLRASAQTVSYEVFMGLALMGIVVQV 171          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOH_LEPBA1.159e-2433.91NADH-quinone oxidoreductase subunit H OS=Leptospir... [more]
NUOH_ALHEH1.159e-2434.39NADH-quinone oxidoreductase subunit H OS=Alkalilim... [more]
NU1M_XENLA1.159e-2439.04NADH-ubiquinone oxidoreductase chain 1 OS=Xenopus ... [more]
NU1M_MYXGL1.159e-2440.00NADH-ubiquinone oxidoreductase chain 1 OS=Myxine g... [more]
NUOH_XANCP1.514e-2435.22NADH-quinone oxidoreductase subunit H OS=Xanthomon... [more]
NUOH_XANCB1.514e-2435.22NADH-quinone oxidoreductase subunit H OS=Xanthomon... [more]
NUOH_XANC81.514e-2435.22NADH-quinone oxidoreductase subunit H OS=Xanthomon... [more]
NUOH_SALAR1.514e-2437.58NADH-quinone oxidoreductase subunit H OS=Salmonell... [more]
NUOH_PSEPK1.514e-2434.62NADH-quinone oxidoreductase subunit H OS=Pseudomon... [more]
NUOH_PSEPF1.514e-2432.12NADH-quinone oxidoreductase subunit H OS=Pseudomon... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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