CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_PSEP1 (NADH-quinone oxidoreductase subunit H OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=nuoH PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.514e-24
Identity = 63/182 (34.62%), Postives = 106/182 (58.24%), Query Frame = 3
Query:   84 TPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            TPEV D+              IL VL  I + +  +  G L + ++ER +    Q R GP    P G+ Q  AD  K+ FKE+  P   +  +F++ P +A+ A+L++++VIP +    +ADLNIG+  + A++ ++   +L +G+ SNNKY+ LG LRA+AQ++SYE+ L L ++ + ++V
Sbjct:    5 TPEVIDV--------------ILTVLRAIVVLLAVVVCGAL-LSFVERRLLGWWQDRYGPNRVGPFGMFQIAADMLKMFFKEDWNPPFVDRVIFTLAPVVAMSALLIAFVVIPITPTWGVADLNIGLLFFFAMAGLSVYAVLFAGWSSNNKYALLGSLRASAQTVSYEVFLGLALMGVVVQV 171          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_JANSC (NADH-quinone oxidoreductase subunit H OS=Jannaschia sp. (strain CCS1) GN=nuoH PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.514e-24
Identity = 52/157 (33.12%), Postives = 98/157 (62.42%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            IL +L    + V+ + + +  +++ +R+I A +  R GP      G+LQ+ AD  K + KE ++P+  + +++ + P ++++  L+++ VIPF+   VL+ LN+ +    A+SS+   G++M G+ SN+KY FLG LR+AAQ ISYE+ + L ++ +
Sbjct:   13 ILLILLQCLLLVVPLLVALAFLMYADRKIWAAVMMRKGPNVVGAFGLLQSFADFLKYIVKEIVVPAGADRAVYFLAPIVSLVMALIAWAVIPFNDGWVLSSLNVAVLYVFAVSSLEVYGVIMGGWASNSKYPFLGSLRSAAQMISYEVSIGLIIIGV 169          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BURTA (NADH-quinone oxidoreductase subunit H OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=nuoH PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.514e-24
Identity = 57/156 (36.54%), Postives = 93/156 (59.62%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +W L  I +  + I + V  ++  ER++   +  R+GP    P G+LQ +AD  KLL KE + P+  +  L+ I P + V+     + VIPF    VLA++N G+   +AISSI    ++++G+ SN+KY+FLG +RAAAQ +SYEI +   ++ +
Sbjct:   22 VWALVRILVVAVVILLCVAYLILWERKLIGWMHVRLGPNRVGPAGLLQPIADVLKLLLKEVIHPTAASRWLYLIAPVMTVVPAFAVWAVIPFQAGAVLANINAGLLYAMAISSIGVYAVILAGWASNSKYAFLGAMRAAAQMVSYEISMGFALVLV 177          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BURPS (NADH-quinone oxidoreductase subunit H OS=Burkholderia pseudomallei GN=nuoH PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.514e-24
Identity = 56/156 (35.90%), Postives = 93/156 (59.62%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +W L  I +  + I + V  ++  ER++   +  R+GP    P G+LQ +AD  KLL KE + P+  +  L+ + P + V+     + VIPF    VLA++N G+   +AISSI    ++++G+ SN+KY+FLG +RAAAQ +SYEI +   ++ +
Sbjct:   22 VWALVRILVVAVVILLCVAYLILWERKLIGWMHVRLGPNRVGPAGLLQPIADVLKLLLKEVIRPTAASRWLYLVAPVMTVVPAFAVWAVIPFQAGAVLANINAGLLYAMAISSIGVYAVILAGWASNSKYAFLGAMRAAAQMVSYEISMGFALVLV 177          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BURP6 (NADH-quinone oxidoreductase subunit H OS=Burkholderia pseudomallei (strain 668) GN=nuoH PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.514e-24
Identity = 56/156 (35.90%), Postives = 93/156 (59.62%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +W L  I +  + I + V  ++  ER++   +  R+GP    P G+LQ +AD  KLL KE + P+  +  L+ + P + V+     + VIPF    VLA++N G+   +AISSI    ++++G+ SN+KY+FLG +RAAAQ +SYEI +   ++ +
Sbjct:   22 VWALVRILVVAVVILLCVAYLILWERKLIGWMHVRLGPNRVGPAGLLQPIADVLKLLLKEVIRPTAASRWLYLVAPVMTVVPAFAVWAVIPFQAGAVLANINAGLLYAMAISSIGVYAVILAGWASNSKYAFLGAMRAAAQMVSYEISMGFALVLV 177          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BURP1 (NADH-quinone oxidoreductase subunit H OS=Burkholderia pseudomallei (strain 1710b) GN=nuoH PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.514e-24
Identity = 56/156 (35.90%), Postives = 93/156 (59.62%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +W L  I +  + I + V  ++  ER++   +  R+GP    P G+LQ +AD  KLL KE + P+  +  L+ + P + V+     + VIPF    VLA++N G+   +AISSI    ++++G+ SN+KY+FLG +RAAAQ +SYEI +   ++ +
Sbjct:   22 VWALVRILVVAVVILLCVAYLILWERKLIGWMHVRLGPNRVGPAGLLQPIADVLKLLLKEVIRPTAASRWLYLVAPVMTVVPAFAVWAVIPFQAGAVLANINAGLLYAMAISSIGVYAVILAGWASNSKYAFLGAMRAAAQMVSYEISMGFALVLV 177          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BURP0 (NADH-quinone oxidoreductase subunit H OS=Burkholderia pseudomallei (strain 1106a) GN=nuoH PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.514e-24
Identity = 56/156 (35.90%), Postives = 93/156 (59.62%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +W L  I +  + I + V  ++  ER++   +  R+GP    P G+LQ +AD  KLL KE + P+  +  L+ + P + V+     + VIPF    VLA++N G+   +AISSI    ++++G+ SN+KY+FLG +RAAAQ +SYEI +   ++ +
Sbjct:   22 VWALVRILVVAVVILLCVAYLILWERKLIGWMHVRLGPNRVGPAGLLQPIADVLKLLLKEVIRPTAASRWLYLVAPVMTVVPAFAVWAVIPFQAGAVLANINAGLLYAMAISSIGVYAVILAGWASNSKYAFLGAMRAAAQMVSYEISMGFALVLV 177          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BURMA (NADH-quinone oxidoreductase subunit H OS=Burkholderia mallei GN=nuoH PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.514e-24
Identity = 56/156 (35.90%), Postives = 93/156 (59.62%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +W L  I +  + I + V  ++  ER++   +  R+GP    P G+LQ +AD  KLL KE + P+  +  L+ + P + V+     + VIPF    VLA++N G+   +AISSI    ++++G+ SN+KY+FLG +RAAAQ +SYEI +   ++ +
Sbjct:   22 VWALVRILVVAVVILLCVAYLILWERKLIGWMHVRLGPNRVGPAGLLQPIADVLKLLLKEVIRPTAASRWLYLVAPVMTVVPAFAVWAVIPFQAGAVLANINAGLLYAMAISSIGVYAVILAGWASNSKYAFLGAMRAAAQMVSYEISMGFALVLV 177          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BURM1 (NADH-quinone oxidoreductase subunit H OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=nuoH PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.514e-24
Identity = 57/156 (36.54%), Postives = 93/156 (59.62%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +W L  I +  + I + V  ++  ER++   +  R+GP    P G+LQ +AD  KLL KE + P+  +  L+ I P + V+     + VIPF    VLA++N G+   +AISSI    ++++G+ SN+KY+FLG +RAAAQ +SYEI +   ++ +
Sbjct:   22 VWALVRILVVAVVILLCVAYLILWERKLIGWMHVRLGPNRVGPAGLLQPIADVLKLLLKEVIQPTAASRWLYLIAPIMTVVPAFAVWAVIPFQAEAVLANVNAGLLYAMAISSIGVYAVILAGWASNSKYAFLGAMRAAAQMVSYEISMGFALVLV 177          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOHI_NOCFA (NADH-quinone oxidoreductase subunits H/I OS=Nocardia farcinica GN=nuoH/I PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.514e-24
Identity = 59/167 (35.33%), Postives = 100/167 (59.88%), Query Frame = 3
Query:  153 WVLAPISIYVLAITIGV-LVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPF---------SYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            W++   S+++    I + LV V  ER++ A +Q R+GP    P G LQ++ADG K+ FKE+L+P+  +  ++ + P ++VI   +++ VIP          +  L L D+ +G+   +AI+SI   G++++G+ S + Y  LGGLR+ AQ ISYEI + LC  ++ L
Sbjct:   13 WLVVAKSVFLFVYIILIPLVAVLAERKVVARMQMRVGPNRVGPFGSLQSIADGVKMAFKEDLVPAIVDKPIYLLAPVVSVIPAFMAFAVIPLGGEVSVAGNTTALQLTDMPVGVLYILAITSIGVYGIVLAGWASGSTYPLLGGLRSTAQVISYEIAMALCFAAVFL 179          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOH_PSEP11.514e-2434.62NADH-quinone oxidoreductase subunit H OS=Pseudomon... [more]
NUOH_JANSC1.514e-2433.12NADH-quinone oxidoreductase subunit H OS=Jannaschi... [more]
NUOH_BURTA1.514e-2436.54NADH-quinone oxidoreductase subunit H OS=Burkholde... [more]
NUOH_BURPS1.514e-2435.90NADH-quinone oxidoreductase subunit H OS=Burkholde... [more]
NUOH_BURP61.514e-2435.90NADH-quinone oxidoreductase subunit H OS=Burkholde... [more]
NUOH_BURP11.514e-2435.90NADH-quinone oxidoreductase subunit H OS=Burkholde... [more]
NUOH_BURP01.514e-2435.90NADH-quinone oxidoreductase subunit H OS=Burkholde... [more]
NUOH_BURMA1.514e-2435.90NADH-quinone oxidoreductase subunit H OS=Burkholde... [more]
NUOH_BURM11.514e-2436.54NADH-quinone oxidoreductase subunit H OS=Burkholde... [more]
NUOHI_NOCFA1.514e-2435.33NADH-quinone oxidoreductase subunits H/I OS=Nocard... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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