CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_TETNG (NADH-ubiquinone oxidoreductase chain 1 OS=Tetraodon nigroviridis GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.514e-24
Identity = 60/157 (38.22%), Postives = 98/157 (62.42%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            I  +L P++ +++ + + V  +  LER++   +Q R GP    P G+LQ +ADG KL  KE + PS  +  LF + P +A+   +  +  +P  Y ++  DLN+ I L++A+SS+A   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L L +LS+
Sbjct:    6 ITHILNPLA-FIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPILFILTPMLALTLAMTLWAPLPLPYPVL--DLNLAILLFVALSSLAVYSILGSGWASNSKYALVGALRAVAQTISYEVSLGLILLSL 159          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_PERGU (NADH-ubiquinone oxidoreductase chain 1 OS=Perameles gunnii GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.514e-24
Identity = 58/150 (38.67%), Postives = 92/150 (61.33%), Query Frame = 3
Query:  174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +Y++ I + V  +  +ER++   +Q R GP    P G+LQ  AD  KL  KE L P   + S+F I P +A+   L  ++ +P  Y+L+  DLN+G+   +A+S ++   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LSI L
Sbjct:    8 LYIVPILLAVAFLTLIERKVLGYMQFRKGPNIVGPYGLLQPFADAVKLFTKEPLRPLTSSISMFIIAPILALTLALTIWVPLPMPYSLI--DLNMGLLFILALSGLSVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIML 155          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_HORSE (NADH-ubiquinone oxidoreductase chain 1 OS=Equus caballus GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.514e-24
Identity = 57/152 (37.50%), Postives = 94/152 (61.84%), Query Frame = 3
Query:  168 ISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            + + ++ I + V  +  +ER++   +Q R GP    P G+LQ +AD  KL  KE L P   ++S+F I P +A+   L  ++ +P  Y L+  ++N+GI   +A+SS+A   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LS+ L
Sbjct:    6 VLLLIVPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPIADALKLFIKEPLQPLTSSTSMFIIAPILALTLALTMWIPLPMPYPLI--NMNLGILFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLL 155          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_PSEFS (NADH-quinone oxidoreductase subunit H OS=Pseudomonas fluorescens (strain SBW25) GN=nuoH PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.977e-24
Identity = 54/165 (32.73%), Postives = 101/165 (61.21%), Query Frame = 3
Query:  135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            EV  ++  +    + +LA+ +   ++ ++ER +    Q R GP    P G+ Q  AD  K+ FKE+  P   +  +F++ P +A+ A+L+++ VIP +    +ADLNIG+  + A++ ++   +L +G+ SNNK++ LG LRA+AQ++SYE+ + L ++ I ++V
Sbjct:    7 EVIDVIISVVKAIVILLAVVVAGALLSFVERRLLGWWQDRYGPNRVGPFGMFQIAADMLKMFFKEDWTPPFADKVIFTLAPVVAMSALLIAFAVIPITPTWGVADLNIGLLFFFAMAGLSVYAVLFAGWSSNNKFALLGSLRASAQTVSYEVFMGLALMGIVVQV 171          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_CARHZ (NADH-quinone oxidoreductase subunit H OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=nuoH PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.977e-24
Identity = 57/156 (36.54%), Postives = 94/156 (60.26%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            L +LA + +    + +  L +++ +R+  A +Q R+GP    P GI Q +AD  KL  KE  +P+  +   + + P +     ++ +LVIPF   +V  DLN+G+   +AI+S+  I L M+G+ SNNKYS LG +R+ AQ +SYE+P+ L +LS+
Sbjct:   31 LMLLAVVGVLAF-LFLNALFLIYYDRKFGAWVQARLGPNRVGPRGIFQTVADTVKLFAKEIFIPNNVDRWPYLLAPVLIFTIPVMLFLVIPFGKGMVPYDLNLGVLYLVAITSVETIVLWMAGWSSNNKYSLLGAMRSVAQMLSYEMPVILAMLSV 185          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH2_GEOMG (NADH-quinone oxidoreductase subunit H 2 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=nuoH2 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.977e-24
Identity = 64/179 (35.75%), Postives = 101/179 (56.42%), Query Frame = 3
Query:  141 YGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFS-------YNLVL-------------ADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            Y I  VL  + ++V  + + V    + ER+I   +Q R+GP      G+LQ +ADG KL FKE ++PS+ +   F I P IA++   + + VIPF        Y + L              DLN+G+   +A++SI   G++++G+ SN+KYS LGGLR++AQ ISYE+   L ++S+
Sbjct:    3 YYIAMVLKVLVVFVFVL-LTVAYATYAERKIIGHMQVRLGPMRTGWHGLLQPIADGVKLFFKEEIIPSKADKFAFLIAPLIALVPAFIGFAVIPFGETIEVGGYKIPLQIAAYYDTASGQVVDLNVGVLYILALASIGVYGIVLAGWSSNSKYSLLGGLRSSAQMISYELAAGLAIISV 180          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_THYAR (NADH-ubiquinone oxidoreductase chain 1 OS=Thymallus arcticus GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.977e-24
Identity = 62/157 (39.49%), Postives = 95/157 (60.51%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            I  VL P++ Y++ + + V  +  LER++   +Q R GP    P G+LQ +ADG KL  KE + PS  +  LF   P +A+   L  +  +P  Y +   DLN+G+   +A+SS+A   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L L +LS+
Sbjct:    6 ITHVLNPLA-YIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGLKLFIKEPVRPSTSSPFLFLATPMLALTLALTLWAPMPIPYPVT--DLNLGVLFVLALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSV 159          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_CANAL (NADH-ubiquinone oxidoreductase chain 1 OS=Candida albicans GN=NAD1 PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.977e-24
Identity = 57/146 (39.04%), Postives = 90/146 (61.64%), Query Frame = 3
Query:  174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 611
            I  L++ + V  +   ER+    +Q+R+GP      GIL A+AD  KLL KE ++P+  +  +  + P I++I+ LL + VIPF+  + + D N G  L +AISS+   G L++G+ +N+KYS LG +R+ AQ ISYE+ LT  +L
Sbjct:    8 IMFLSVLLAVAFLTVAERKTLGYMQRRVGPNAVGYYGILMAIADAAKLLLKEIVVPTHADKLILFVSPMISLISALLCWSVIPFAPGVTIYDSNYGFILTLAISSVGVFGTLLAGWSANSKYSLLGSIRSTAQLISYELVLTTIIL 153          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_PSEAE (NADH-quinone oxidoreductase subunit H OS=Pseudomonas aeruginosa GN=nuoH PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.582e-24
Identity = 60/161 (37.27%), Postives = 98/161 (60.87%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            IL V+  I + +LA+ I   ++ W+ER +    Q R GP    P G  Q  AD  K+ FKE+  P   +  +F++ P IA+ A+L+++ ++P +    +ADLNIGI  + A++ +    +L +G+ SNNK++ LG LRA+AQ+ISYE+ L L ++ I  +V
Sbjct:   12 ILTVVKAI-VVLLAVVICGALLSWVERRLLGLWQDRYGPNRVGPFGAFQLGADMVKMFFKEDWTPPFADKMIFTLAPVIAMGALLVAFAIVPITPTWGVADLNIGILFFFAMAGLTVYAVLFAGWSSNNKFALLGSLRASAQTISYEVFLALSLMGIVAQV 171          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_PSEAB (NADH-quinone oxidoreductase subunit H OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=nuoH PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.582e-24
Identity = 60/161 (37.27%), Postives = 98/161 (60.87%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            IL V+  I + +LA+ I   ++ W+ER +    Q R GP    P G  Q  AD  K+ FKE+  P   +  +F++ P IA+ A+L+++ ++P +    +ADLNIGI  + A++ +    +L +G+ SNNK++ LG LRA+AQ+ISYE+ L L ++ I  +V
Sbjct:   12 ILTVVKAI-VVLLAVVICGALLSWVERRLLGLWQDRYGPNRVGPFGAFQLGADMVKMFFKEDWTPPFADKMIFTLAPVIAMGALLVAFAIVPITPTWGVADLNIGILFFFAMAGLTVYAVLFAGWSSNNKFALLGSLRASAQTISYEVFLALSLMGIVAQV 171          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1M_TETNG1.514e-2438.22NADH-ubiquinone oxidoreductase chain 1 OS=Tetraodo... [more]
NU1M_PERGU1.514e-2438.67NADH-ubiquinone oxidoreductase chain 1 OS=Peramele... [more]
NU1M_HORSE1.514e-2437.50NADH-ubiquinone oxidoreductase chain 1 OS=Equus ca... [more]
NUOH_PSEFS1.977e-2432.73NADH-quinone oxidoreductase subunit H OS=Pseudomon... [more]
NUOH_CARHZ1.977e-2436.54NADH-quinone oxidoreductase subunit H OS=Carboxydo... [more]
NUOH2_GEOMG1.977e-2435.75NADH-quinone oxidoreductase subunit H 2 OS=Geobact... [more]
NU1M_THYAR1.977e-2439.49NADH-ubiquinone oxidoreductase chain 1 OS=Thymallu... [more]
NU1M_CANAL1.977e-2439.04NADH-ubiquinone oxidoreductase chain 1 OS=Candida ... [more]
NUOH_PSEAE2.582e-2437.27NADH-quinone oxidoreductase subunit H OS=Pseudomon... [more]
NUOH_PSEAB2.582e-2437.27NADH-quinone oxidoreductase subunit H OS=Pseudomon... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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