CK939407
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_TETNG (NADH-ubiquinone oxidoreductase chain 1 OS=Tetraodon nigroviridis GN=MT-ND1 PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.514e-24 Identity = 60/157 (38.22%), Postives = 98/157 (62.42%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 I +L P++ +++ + + V + LER++ +Q R GP P G+LQ +ADG KL KE + PS + LF + P +A+ + + +P Y ++ DLN+ I L++A+SS+A +L SG+ SN+KY+ +G LRA AQ+ISYE+ L L +LS+ Sbjct: 6 ITHILNPLA-FIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPILFILTPMLALTLAMTLWAPLPLPYPVL--DLNLAILLFVALSSLAVYSILGSGWASNSKYALVGALRAVAQTISYEVSLGLILLSL 159
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_PERGU (NADH-ubiquinone oxidoreductase chain 1 OS=Perameles gunnii GN=MT-ND1 PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.514e-24 Identity = 58/150 (38.67%), Postives = 92/150 (61.33%), Query Frame = 3 Query: 174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 +Y++ I + V + +ER++ +Q R GP P G+LQ AD KL KE L P + S+F I P +A+ L ++ +P Y+L+ DLN+G+ +A+S ++ +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LSI L Sbjct: 8 LYIVPILLAVAFLTLIERKVLGYMQFRKGPNIVGPYGLLQPFADAVKLFTKEPLRPLTSSISMFIIAPILALTLALTIWVPLPMPYSLI--DLNMGLLFILALSGLSVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIML 155
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_HORSE (NADH-ubiquinone oxidoreductase chain 1 OS=Equus caballus GN=MT-ND1 PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.514e-24 Identity = 57/152 (37.50%), Postives = 94/152 (61.84%), Query Frame = 3 Query: 168 ISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 + + ++ I + V + +ER++ +Q R GP P G+LQ +AD KL KE L P ++S+F I P +A+ L ++ +P Y L+ ++N+GI +A+SS+A +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LS+ L Sbjct: 6 VLLLIVPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPIADALKLFIKEPLQPLTSSTSMFIIAPILALTLALTMWIPLPMPYPLI--NMNLGILFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLL 155
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_PSEFS (NADH-quinone oxidoreductase subunit H OS=Pseudomonas fluorescens (strain SBW25) GN=nuoH PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.977e-24 Identity = 54/165 (32.73%), Postives = 101/165 (61.21%), Query Frame = 3 Query: 135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629 EV ++ + + +LA+ + ++ ++ER + Q R GP P G+ Q AD K+ FKE+ P + +F++ P +A+ A+L+++ VIP + +ADLNIG+ + A++ ++ +L +G+ SNNK++ LG LRA+AQ++SYE+ + L ++ I ++V Sbjct: 7 EVIDVIISVVKAIVILLAVVVAGALLSFVERRLLGWWQDRYGPNRVGPFGMFQIAADMLKMFFKEDWTPPFADKVIFTLAPVVAMSALLIAFAVIPITPTWGVADLNIGLLFFFAMAGLSVYAVLFAGWSSNNKFALLGSLRASAQTVSYEVFMGLALMGIVVQV 171
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_CARHZ (NADH-quinone oxidoreductase subunit H OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=nuoH PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.977e-24 Identity = 57/156 (36.54%), Postives = 94/156 (60.26%), Query Frame = 3 Query: 150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 L +LA + + + + L +++ +R+ A +Q R+GP P GI Q +AD KL KE +P+ + + + P + ++ +LVIPF +V DLN+G+ +AI+S+ I L M+G+ SNNKYS LG +R+ AQ +SYE+P+ L +LS+ Sbjct: 31 LMLLAVVGVLAF-LFLNALFLIYYDRKFGAWVQARLGPNRVGPRGIFQTVADTVKLFAKEIFIPNNVDRWPYLLAPVLIFTIPVMLFLVIPFGKGMVPYDLNLGVLYLVAITSVETIVLWMAGWSSNNKYSLLGAMRSVAQMLSYEMPVILAMLSV 185
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH2_GEOMG (NADH-quinone oxidoreductase subunit H 2 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=nuoH2 PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.977e-24 Identity = 64/179 (35.75%), Postives = 101/179 (56.42%), Query Frame = 3 Query: 141 YGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFS-------YNLVL-------------ADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 Y I VL + ++V + + V + ER+I +Q R+GP G+LQ +ADG KL FKE ++PS+ + F I P IA++ + + VIPF Y + L DLN+G+ +A++SI G++++G+ SN+KYS LGGLR++AQ ISYE+ L ++S+ Sbjct: 3 YYIAMVLKVLVVFVFVL-LTVAYATYAERKIIGHMQVRLGPMRTGWHGLLQPIADGVKLFFKEEIIPSKADKFAFLIAPLIALVPAFIGFAVIPFGETIEVGGYKIPLQIAAYYDTASGQVVDLNVGVLYILALASIGVYGIVLAGWSSNSKYSLLGGLRSSAQMISYELAAGLAIISV 180
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_THYAR (NADH-ubiquinone oxidoreductase chain 1 OS=Thymallus arcticus GN=MT-ND1 PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.977e-24 Identity = 62/157 (39.49%), Postives = 95/157 (60.51%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 I VL P++ Y++ + + V + LER++ +Q R GP P G+LQ +ADG KL KE + PS + LF P +A+ L + +P Y + DLN+G+ +A+SS+A +L SG+ SN+KY+ +G LRA AQ+ISYE+ L L +LS+ Sbjct: 6 ITHVLNPLA-YIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGLKLFIKEPVRPSTSSPFLFLATPMLALTLALTLWAPMPIPYPVT--DLNLGVLFVLALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSV 159
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_CANAL (NADH-ubiquinone oxidoreductase chain 1 OS=Candida albicans GN=NAD1 PE=3 SV=2) HSP 1 Score: 113.235 bits (282), Expect = 1.977e-24 Identity = 57/146 (39.04%), Postives = 90/146 (61.64%), Query Frame = 3 Query: 174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 611 I L++ + V + ER+ +Q+R+GP GIL A+AD KLL KE ++P+ + + + P I++I+ LL + VIPF+ + + D N G L +AISS+ G L++G+ +N+KYS LG +R+ AQ ISYE+ LT +L Sbjct: 8 IMFLSVLLAVAFLTVAERKTLGYMQRRVGPNAVGYYGILMAIADAAKLLLKEIVVPTHADKLILFVSPMISLISALLCWSVIPFAPGVTIYDSNYGFILTLAISSVGVFGTLLAGWSANSKYSLLGSIRSTAQLISYELVLTTIIL 153
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_PSEAE (NADH-quinone oxidoreductase subunit H OS=Pseudomonas aeruginosa GN=nuoH PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.582e-24 Identity = 60/161 (37.27%), Postives = 98/161 (60.87%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629 IL V+ I + +LA+ I ++ W+ER + Q R GP P G Q AD K+ FKE+ P + +F++ P IA+ A+L+++ ++P + +ADLNIGI + A++ + +L +G+ SNNK++ LG LRA+AQ+ISYE+ L L ++ I +V Sbjct: 12 ILTVVKAI-VVLLAVVICGALLSWVERRLLGLWQDRYGPNRVGPFGAFQLGADMVKMFFKEDWTPPFADKMIFTLAPVIAMGALLVAFAIVPITPTWGVADLNIGILFFFAMAGLTVYAVLFAGWSSNNKFALLGSLRASAQTISYEVFLALSLMGIVAQV 171
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_PSEAB (NADH-quinone oxidoreductase subunit H OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=nuoH PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.582e-24 Identity = 60/161 (37.27%), Postives = 98/161 (60.87%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629 IL V+ I + +LA+ I ++ W+ER + Q R GP P G Q AD K+ FKE+ P + +F++ P IA+ A+L+++ ++P + +ADLNIGI + A++ + +L +G+ SNNK++ LG LRA+AQ+ISYE+ L L ++ I +V Sbjct: 12 ILTVVKAI-VVLLAVVICGALLSWVERRLLGLWQDRYGPNRVGPFGAFQLGADMVKMFFKEDWTPPFADKMIFTLAPVIAMGALLVAFAIVPITPTWGVADLNIGILFFFAMAGLTVYAVLFAGWSSNNKFALLGSLRASAQTISYEVFLALSLMGIVAQV 171 The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bpback to top |