CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_PSEA8 (NADH-quinone oxidoreductase subunit H OS=Pseudomonas aeruginosa (strain LESB58) GN=nuoH PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.582e-24
Identity = 60/161 (37.27%), Postives = 98/161 (60.87%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            IL V+  I + +LA+ I   ++ W+ER +    Q R GP    P G  Q  AD  K+ FKE+  P   +  +F++ P IA+ A+L+++ ++P +    +ADLNIGI  + A++ +    +L +G+ SNNK++ LG LRA+AQ+ISYE+ L L ++ I  +V
Sbjct:   12 ILTVVKAI-VVLLAVVICGALLSWVERRLLGLWQDRYGPNRVGPFGAFQLGADMVKMFFKEDWTPPFADKMIFTLAPVIAMGALLVAFAIVPITPTWGVADLNIGILFFFAMAGLTVYAVLFAGWSSNNKFALLGSLRASAQTISYEVFLALSLMGIVAQV 171          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_RHIUN (NADH-ubiquinone oxidoreductase chain 1 OS=Rhinoceros unicornis GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.582e-24
Identity = 57/152 (37.50%), Postives = 95/152 (62.50%), Query Frame = 3
Query:  168 ISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            I + ++ I + V  +  +ER++   +Q R GP    P G+LQ +AD  KL  KE L PS  ++S+F I P +A+   L  ++ +P  + L+  ++N+G+   +A+SS+A   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LS+ L
Sbjct:    6 ILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPIADAIKLFTKEPLQPSTSSTSMFIIAPIMALTLALTMWVPLPMPHPLI--NMNLGVLFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLL 155          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_POLOR (NADH-ubiquinone oxidoreductase chain 1 OS=Polypterus ornatipinnis GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.582e-24
Identity = 58/157 (36.94%), Postives = 99/157 (63.06%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            I  ++ P+ +Y++ I + +  +  +ER++   +Q R GP    P G+LQ +ADG KL  KE + PS  + +LF + P++A+   L+ ++ +P    L L DLN+ I   +A+SS++   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L L ++S+
Sbjct:    4 ITLIINPL-MYIIPILLAMAFLTLVERKMLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVKPSTSSPTLFLLTPTLALTLALILWIPLPMP--LALTDLNLTILFILAVSSLSVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLIIISL 157          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_NYCNO (NADH-ubiquinone oxidoreductase chain 1 (Fragment) OS=Nyctalus noctula GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.582e-24
Identity = 57/148 (38.51%), Postives = 92/148 (62.16%), Query Frame = 3
Query:  180 VLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++ I + V  +  LER++   +Q R GP    P G+LQ +AD  KL  KE L P   + +LF I P++A+   L+ ++ +P  + L+  ++N+ I   +A+SS+A   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LSI L
Sbjct:    4 IIPILLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFIKEPLQPLTSSLALFIIAPTLALTLALMMWIPLPMPHPLI--NMNLSILFMLALSSLAVYAILWSGWASNSKYALIGALRAVAQTISYEVTLAIIILSILL 149          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_DANRE (NADH-ubiquinone oxidoreductase chain 1 OS=Danio rerio GN=mt-nd1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.582e-24
Identity = 60/146 (41.10%), Postives = 91/146 (62.33%), Query Frame = 3
Query:  177 YVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLS 614
            Y + + I V  +  +ER++   +Q R GP    P G+LQ++ADG KL  KE + PS  +  LF   P +A+I  ++ +  +P  Y ++  DLN+GI   +AISS+A   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L L +LS
Sbjct:   15 YAVPVLIAVAFLTLVERKVLGYMQLRKGPNVMGPRGLLQSVADGVKLFIKEPIRPSMASPILFLTAPVLALILAMMLWAPMPMPYPVL--DLNLGILFIMAISSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLS 158          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_COTJA (NADH-ubiquinone oxidoreductase chain 1 OS=Coturnix coturnix japonica GN=MT-ND1 PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.582e-24
Identity = 58/146 (39.73%), Postives = 90/146 (61.64%), Query Frame = 3
Query:  177 YVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLS 614
            Y++ I I V  +  +ER+I + +Q R GP    P G+LQ +ADG KL  KE + PS  +  LF + P +A++  L  +  +P  + +   DLN+G+   +A+SS+    LL SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LS
Sbjct:   16 YMIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPFLFILTPILALLLALTIWTPLPLPFPMT--DLNLGLLFLLAMSSLTVYSLLWSGWASNSKYALIGALRAVAQTISYEVTLAIILLS 159          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_CERSI (NADH-ubiquinone oxidoreductase chain 1 OS=Ceratotherium simum GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.582e-24
Identity = 57/152 (37.50%), Postives = 95/152 (62.50%), Query Frame = 3
Query:  168 ISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            I + V+ I + V  +  +ER++   +Q R GP    P G+LQ +AD  KL  KE L PS  ++++F I P +A+   L  ++ +P  + L+  ++N+G+   +A+SS+A   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LS+ L
Sbjct:    6 ILLLVIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPIADAIKLFTKEPLQPSTSSTTMFIIAPILALTLALTMWIPLPMPHPLI--NMNLGVLFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLL 155          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_BRALA (NADH-ubiquinone oxidoreductase chain 1 OS=Branchiostoma lanceolatum GN=ND1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.582e-24
Identity = 57/150 (38.00%), Postives = 89/150 (59.33%), Query Frame = 3
Query:  168 ISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            I +Y + + + V  +   ER++   +Q R GP    P G+LQ +ADG KL  KE + PS  N S+F   P +A+I  LL ++ +P     +  +LN  +   +AISS++   ++ SG+ SN+KY+ LG LRA AQ +SYE+ L L +LS+
Sbjct:    8 IFLYFVPVLLAVAFLTLTERKVIGYVQLRKGPNVVGPYGLLQPIADGVKLFIKEPIKPSSSNPSVFFFAPMLALILALLLWMPVPLMDAFI--ELNFAVLFVLAISSLSVYSIMASGWSSNSKYALLGALRAVAQMVSYEVSLGLIILSL 155          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_BRAFL (NADH-ubiquinone oxidoreductase chain 1 OS=Branchiostoma floridae GN=ND1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.582e-24
Identity = 57/150 (38.00%), Postives = 89/150 (59.33%), Query Frame = 3
Query:  168 ISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            I +Y + + + V  +   ER++   +Q R GP    P G+LQ +ADG KL  KE + PS  N S+F   P +A+I  LL ++ +P     +  +LN  +   +AISS++   ++ SG+ SN+KY+ LG LRA AQ +SYE+ L L +LS+
Sbjct:    8 IFLYFVPVLLAVAFLTLTERKVIGYVQLRKGPNVVGPYGLLQPIADGVKLFIKEPIKPSSSNPSVFFFAPMLALILALLLWMPVPLMDAFI--ELNFAVLFVLAISSLSVYSIMASGWSSNSKYALLGALRAVAQMVSYEVSLGLIILSL 155          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_SALTI (NADH-quinone oxidoreductase subunit H OS=Salmonella typhi GN=nuoH PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.372e-24
Identity = 59/157 (37.58%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L +L  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   +  +F++ P IA  ++LLS+ ++P S N V+ADLNIGI   + ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LLSILKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLSFAIVPVSPNWVVADLNIGILFSLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTVSYEVFLGLSLMGV 167          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOH_PSEA82.582e-2437.27NADH-quinone oxidoreductase subunit H OS=Pseudomon... [more]
NU1M_RHIUN2.582e-2437.50NADH-ubiquinone oxidoreductase chain 1 OS=Rhinocer... [more]
NU1M_POLOR2.582e-2436.94NADH-ubiquinone oxidoreductase chain 1 OS=Polypter... [more]
NU1M_NYCNO2.582e-2438.51NADH-ubiquinone oxidoreductase chain 1 (Fragment) ... [more]
NU1M_DANRE2.582e-2441.10NADH-ubiquinone oxidoreductase chain 1 OS=Danio re... [more]
NU1M_COTJA2.582e-2439.73NADH-ubiquinone oxidoreductase chain 1 OS=Coturnix... [more]
NU1M_CERSI2.582e-2437.50NADH-ubiquinone oxidoreductase chain 1 OS=Ceratoth... [more]
NU1M_BRALA2.582e-2438.00NADH-ubiquinone oxidoreductase chain 1 OS=Branchio... [more]
NU1M_BRAFL2.582e-2438.00NADH-ubiquinone oxidoreductase chain 1 OS=Branchio... [more]
NUOH_SALTI3.372e-2437.58NADH-quinone oxidoreductase subunit H OS=Salmonell... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
back to top