CK939407
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_PSEA8 (NADH-quinone oxidoreductase subunit H OS=Pseudomonas aeruginosa (strain LESB58) GN=nuoH PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.582e-24 Identity = 60/161 (37.27%), Postives = 98/161 (60.87%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629 IL V+ I + +LA+ I ++ W+ER + Q R GP P G Q AD K+ FKE+ P + +F++ P IA+ A+L+++ ++P + +ADLNIGI + A++ + +L +G+ SNNK++ LG LRA+AQ+ISYE+ L L ++ I +V Sbjct: 12 ILTVVKAI-VVLLAVVICGALLSWVERRLLGLWQDRYGPNRVGPFGAFQLGADMVKMFFKEDWTPPFADKMIFTLAPVIAMGALLVAFAIVPITPTWGVADLNIGILFFFAMAGLTVYAVLFAGWSSNNKFALLGSLRASAQTISYEVFLALSLMGIVAQV 171
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_RHIUN (NADH-ubiquinone oxidoreductase chain 1 OS=Rhinoceros unicornis GN=MT-ND1 PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.582e-24 Identity = 57/152 (37.50%), Postives = 95/152 (62.50%), Query Frame = 3 Query: 168 ISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 I + ++ I + V + +ER++ +Q R GP P G+LQ +AD KL KE L PS ++S+F I P +A+ L ++ +P + L+ ++N+G+ +A+SS+A +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LS+ L Sbjct: 6 ILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPIADAIKLFTKEPLQPSTSSTSMFIIAPIMALTLALTMWVPLPMPHPLI--NMNLGVLFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLL 155
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_POLOR (NADH-ubiquinone oxidoreductase chain 1 OS=Polypterus ornatipinnis GN=MT-ND1 PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.582e-24 Identity = 58/157 (36.94%), Postives = 99/157 (63.06%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 I ++ P+ +Y++ I + + + +ER++ +Q R GP P G+LQ +ADG KL KE + PS + +LF + P++A+ L+ ++ +P L L DLN+ I +A+SS++ +L SG+ SN+KY+ +G LRA AQ+ISYE+ L L ++S+ Sbjct: 4 ITLIINPL-MYIIPILLAMAFLTLVERKMLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVKPSTSSPTLFLLTPTLALTLALILWIPLPMP--LALTDLNLTILFILAVSSLSVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLIIISL 157
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_NYCNO (NADH-ubiquinone oxidoreductase chain 1 (Fragment) OS=Nyctalus noctula GN=MT-ND1 PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.582e-24 Identity = 57/148 (38.51%), Postives = 92/148 (62.16%), Query Frame = 3 Query: 180 VLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 ++ I + V + LER++ +Q R GP P G+LQ +AD KL KE L P + +LF I P++A+ L+ ++ +P + L+ ++N+ I +A+SS+A +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LSI L Sbjct: 4 IIPILLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFIKEPLQPLTSSLALFIIAPTLALTLALMMWIPLPMPHPLI--NMNLSILFMLALSSLAVYAILWSGWASNSKYALIGALRAVAQTISYEVTLAIIILSILL 149
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_DANRE (NADH-ubiquinone oxidoreductase chain 1 OS=Danio rerio GN=mt-nd1 PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.582e-24 Identity = 60/146 (41.10%), Postives = 91/146 (62.33%), Query Frame = 3 Query: 177 YVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLS 614 Y + + I V + +ER++ +Q R GP P G+LQ++ADG KL KE + PS + LF P +A+I ++ + +P Y ++ DLN+GI +AISS+A +L SG+ SN+KY+ +G LRA AQ+ISYE+ L L +LS Sbjct: 15 YAVPVLIAVAFLTLVERKVLGYMQLRKGPNVMGPRGLLQSVADGVKLFIKEPIRPSMASPILFLTAPVLALILAMMLWAPMPMPYPVL--DLNLGILFIMAISSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLS 158
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_COTJA (NADH-ubiquinone oxidoreductase chain 1 OS=Coturnix coturnix japonica GN=MT-ND1 PE=3 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 2.582e-24 Identity = 58/146 (39.73%), Postives = 90/146 (61.64%), Query Frame = 3 Query: 177 YVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLS 614 Y++ I I V + +ER+I + +Q R GP P G+LQ +ADG KL KE + PS + LF + P +A++ L + +P + + DLN+G+ +A+SS+ LL SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LS Sbjct: 16 YMIPILIAVAFLTLVERKILSYMQARKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPFLFILTPILALLLALTIWTPLPLPFPMT--DLNLGLLFLLAMSSLTVYSLLWSGWASNSKYALIGALRAVAQTISYEVTLAIILLS 159
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_CERSI (NADH-ubiquinone oxidoreductase chain 1 OS=Ceratotherium simum GN=MT-ND1 PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.582e-24 Identity = 57/152 (37.50%), Postives = 95/152 (62.50%), Query Frame = 3 Query: 168 ISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 I + V+ I + V + +ER++ +Q R GP P G+LQ +AD KL KE L PS ++++F I P +A+ L ++ +P + L+ ++N+G+ +A+SS+A +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LS+ L Sbjct: 6 ILLLVIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPIADAIKLFTKEPLQPSTSSTTMFIIAPILALTLALTMWIPLPMPHPLI--NMNLGVLFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLL 155
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_BRALA (NADH-ubiquinone oxidoreductase chain 1 OS=Branchiostoma lanceolatum GN=ND1 PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.582e-24 Identity = 57/150 (38.00%), Postives = 89/150 (59.33%), Query Frame = 3 Query: 168 ISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 I +Y + + + V + ER++ +Q R GP P G+LQ +ADG KL KE + PS N S+F P +A+I LL ++ +P + +LN + +AISS++ ++ SG+ SN+KY+ LG LRA AQ +SYE+ L L +LS+ Sbjct: 8 IFLYFVPVLLAVAFLTLTERKVIGYVQLRKGPNVVGPYGLLQPIADGVKLFIKEPIKPSSSNPSVFFFAPMLALILALLLWMPVPLMDAFI--ELNFAVLFVLAISSLSVYSIMASGWSSNSKYALLGALRAVAQMVSYEVSLGLIILSL 155
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_BRAFL (NADH-ubiquinone oxidoreductase chain 1 OS=Branchiostoma floridae GN=ND1 PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.582e-24 Identity = 57/150 (38.00%), Postives = 89/150 (59.33%), Query Frame = 3 Query: 168 ISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 I +Y + + + V + ER++ +Q R GP P G+LQ +ADG KL KE + PS N S+F P +A+I LL ++ +P + +LN + +AISS++ ++ SG+ SN+KY+ LG LRA AQ +SYE+ L L +LS+ Sbjct: 8 IFLYFVPVLLAVAFLTLTERKVIGYVQLRKGPNVVGPYGLLQPIADGVKLFIKEPIKPSSSNPSVFFFAPMLALILALLLWMPVPLMDAFI--ELNFAVLFVLAISSLSVYSIMASGWSSNSKYALLGALRAVAQMVSYEVSLGLIILSL 155
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_SALTI (NADH-quinone oxidoreductase subunit H OS=Salmonella typhi GN=nuoH PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 3.372e-24 Identity = 59/157 (37.58%), Postives = 96/157 (61.15%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 +L +L + I ++ +T G + ER + Q R GP G LQ +AD K+ FKE+ +P + +F++ P IA ++LLS+ ++P S N V+ADLNIGI + ++ +A +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ + Sbjct: 12 LLSILKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLSFAIVPVSPNWVVADLNIGILFSLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTVSYEVFLGLSLMGV 167 The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bpback to top |