CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_RALPJ (NADH-quinone oxidoreductase subunit H OS=Ralstonia pickettii (strain 12J) GN=nuoH PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.372e-24
Identity = 52/157 (33.12%), Postives = 98/157 (62.42%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            ++W L      +L + + V  ++  ER++   +  R+GP    P+G+LQ +AD  KLL KE ++PS  +  ++ I P + ++  +  + VIPF    +++++N G+   +AISS+   G++++G+ SN+KY+FLG +RA+AQ ISYEI +   ++++
Sbjct:   19 LVWTLVRAVCIILPLLLCVAYLILWERKLIGWMHVRLGPNRVGPMGLLQPIADVLKLLLKEVMVPSAVSRGMYIIAPLMVLMPAVAIWAVIPFQAEAMVSNINAGLLYVMAISSVGVYGVILAGWASNSKYAFLGAMRASAQMISYEIAMGFALVTV 175          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_PSEE4 (NADH-quinone oxidoreductase subunit H OS=Pseudomonas entomophila (strain L48) GN=nuoH PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.372e-24
Identity = 55/165 (33.33%), Postives = 102/165 (61.82%), Query Frame = 3
Query:  135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            EV  ++  +    + +LA+ +   ++ ++ER +    Q R GP    P G+ Q  AD  K+ FKE+  P   +  +F++ P +A+ A+L++++VIP +    +ADLNIG+  + A++ ++   +L +G+ SNNKY+ LG LRA+AQ++SYE+ L L ++ + ++V
Sbjct:    7 EVIDVILTVVRAIVVLLAVVVCGALLSFVERRLLGWWQDRYGPNRVGPFGMFQIAADMLKMFFKEDWNPPFVDRMIFTLAPVVAMSALLIAFVVIPITPLWGVADLNIGLLFFFAMAGLSVYAVLFAGWSSNNKYALLGSLRASAQTVSYEVFLGLALMGVVVQV 171          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_PSEA7 (NADH-quinone oxidoreductase subunit H OS=Pseudomonas aeruginosa (strain PA7) GN=nuoH PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.372e-24
Identity = 60/161 (37.27%), Postives = 98/161 (60.87%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            IL V+  I + +LA+ I   ++ W+ER +    Q R GP    P G  Q  AD  K+ FKE+  P   +  +F++ P IA+ A+L+++ ++P +    +ADLNIGI  + A++ +    +L +G+ SNNK++ LG LRA+AQ+ISYE+ L L ++ I  +V
Sbjct:   12 ILTVVKAI-VVLLAVVICGALLSWVERRLLGLWQDRYGPNRVGPFGAFQLGADMIKMFFKEDWTPPFADKMIFTLAPVIAMGALLVAFAIVPITPTWGVADLNIGILFFFAMAGLTVYAVLFAGWSSNNKFALLGSLRASAQTISYEVFLALSLMGIVAQV 171          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_TAPME (NADH-ubiquinone oxidoreductase chain 1 OS=Taphozous melanopogon GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.372e-24
Identity = 57/155 (36.77%), Postives = 95/155 (61.29%), Query Frame = 3
Query:  159 LAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            L  + + ++ I + V  +  LER++   +Q R GP    P G+LQ +AD  KL  KE L P   ++++F I P +A+   L  ++ +P  Y L+  ++N+G+   +A+SS+A   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LS+ L
Sbjct:    3 LINLLLMIVPILLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPLWPLTSSATMFIIAPILALSLALTMWIPLPMPYPLI--NMNLGVLFMLAMSSLAVYAILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLL 155          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_SALSA (NADH-ubiquinone oxidoreductase chain 1 OS=Salmo salar GN=MT-ND1 PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 3.372e-24
Identity = 60/157 (38.22%), Postives = 95/157 (60.51%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            I  ++ P++ Y++ + + V  +  LER++   +Q R GP    P G+LQ +ADG KL  KE + PS  +  LF   P +A+   L  +  +P  Y +   DLN+G+   +A+SS+A   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L L +LS+
Sbjct:    6 ITHIINPLA-YIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGLKLFIKEPVRPSTSSPFLFLATPMLALTLALTLWAPMPIPYPIT--DLNLGVLFVLALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSV 159          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_ONCMY (NADH-ubiquinone oxidoreductase chain 1 OS=Oncorhynchus mykiss GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.372e-24
Identity = 61/157 (38.85%), Postives = 95/157 (60.51%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            I  V+ P++ Y++ + + V  +  LER++   +Q R GP    P G+LQ +ADG KL  KE + PS  +  LF   P +A+   L  +  +P  Y +   DLN+G+   +A+SS+A   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L L +LS+
Sbjct:    5 ITHVINPLA-YIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGLKLFIKETVRPSTSSPFLFLATPMLALTLALTLWAPMPIPYPVT--DLNLGVLFVLALSSLAVYSILGSGWASNSKYALIGELRAVAQTISYEVSLGLILLSV 158          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_BOVIN (NADH-ubiquinone oxidoreductase chain 1 OS=Bos taurus GN=MT-ND1 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.372e-24
Identity = 56/152 (36.84%), Postives = 95/152 (62.50%), Query Frame = 3
Query:  168 ISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            I + ++ I + V  +  +ER++   +Q R GP    P G+LQ +AD  KL  KE L P+  ++S+F + P +A+   L  ++ +P  Y L+  ++N+G+   +A+SS+A   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LS+ L
Sbjct:    6 ILMLIIPILLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADAIKLFIKEPLRPATSSASMFILAPIMALGLALTMWIPLPMPYPLI--NMNLGVLFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLL 155          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_BOSIN (NADH-ubiquinone oxidoreductase chain 1 OS=Bos indicus GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.372e-24
Identity = 56/152 (36.84%), Postives = 95/152 (62.50%), Query Frame = 3
Query:  168 ISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            I + ++ I + V  +  +ER++   +Q R GP    P G+LQ +AD  KL  KE L P+  ++S+F + P +A+   L  ++ +P  Y L+  ++N+G+   +A+SS+A   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LS+ L
Sbjct:    6 ILMLIIPILLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADAIKLFIKEPLRPATSSASMFILAPIMALGLALTMWIPLPMPYPLI--NMNLGVLFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLL 155          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_ASTPE (NADH-ubiquinone oxidoreductase chain 1 OS=Asterina pectinifera GN=ND1 PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 3.372e-24
Identity = 59/150 (39.33%), Postives = 93/150 (62.00%), Query Frame = 3
Query:  174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++++ + + V ++  +ER++   +Q R GP    P G+LQ +ADG KLL KE L PS  +  LF   P + +   L+ + VIP  Y++V   +N+ + L I +SS++   LL SG+ SN+ YSFLG +RA AQ++SYEI L L +L + L
Sbjct:   12 LFIVPVLLAVALLTLVERKVLGYMQLRKGPNIVGPFGLLQPIADGFKLLIKETLKPSNASPYLFFFSPVLFLGIALVLWSVIPVKYSVV--SVNLSLMLIIGLSSLSVYSLLGSGWSSNSNYSFLGAVRAVAQTVSYEISLGLILLGVVL 159          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_NITEC (NADH-quinone oxidoreductase subunit H OS=Nitrosomonas eutropha (strain C91) GN=nuoH PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.404e-24
Identity = 65/170 (38.24%), Postives = 106/170 (62.35%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIV----WLEREISAGIQQRIGPEYASPLGIL------QALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPL---TLCVLSIS 620
            L++LA   + +LAI I +L+ V    + ER+I A +Q R+GP   +  GI       Q +AD  K + KE ++P+  N  LF + P +A+   L ++ V+PFS  LVLAD+N  +   +A++S+   G++++G+ SN+KY+FLG +R+AAQ ISYE+ +    +CVL +S
Sbjct:   20 LFLLAKNLLLILAIIIPLLLAVAYLTFAERKIIAFMQVRVGPNRVTFFGIPWLGGWGQPIADAVKAIMKEIIIPTGANKFLFLLAPILAITPALAAWAVVPFSPELVLADINAALLYILAMTSLGVYGVIIAGWASNSKYAFLGAMRSAAQVISYELAMGFALVCVLMMS 189          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOH_RALPJ3.372e-2433.12NADH-quinone oxidoreductase subunit H OS=Ralstonia... [more]
NUOH_PSEE43.372e-2433.33NADH-quinone oxidoreductase subunit H OS=Pseudomon... [more]
NUOH_PSEA73.372e-2437.27NADH-quinone oxidoreductase subunit H OS=Pseudomon... [more]
NU1M_TAPME3.372e-2436.77NADH-ubiquinone oxidoreductase chain 1 OS=Taphozou... [more]
NU1M_SALSA3.372e-2438.22NADH-ubiquinone oxidoreductase chain 1 OS=Salmo sa... [more]
NU1M_ONCMY3.372e-2438.85NADH-ubiquinone oxidoreductase chain 1 OS=Oncorhyn... [more]
NU1M_BOVIN3.372e-2436.84NADH-ubiquinone oxidoreductase chain 1 OS=Bos taur... [more]
NU1M_BOSIN3.372e-2436.84NADH-ubiquinone oxidoreductase chain 1 OS=Bos indi... [more]
NU1M_ASTPE3.372e-2439.33NADH-ubiquinone oxidoreductase chain 1 OS=Asterina... [more]
NUOH_NITEC4.404e-2438.24NADH-quinone oxidoreductase subunit H OS=Nitrosomo... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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