CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BURS3 (NADH-quinone oxidoreductase subunit H OS=Burkholderia sp. (strain 383) GN=nuoH PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.404e-24
Identity = 57/156 (36.54%), Postives = 93/156 (59.62%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +W +  I +  + I + V  ++  ER++   +  R+GP    P G+LQ +AD  KLL KE + PS  +  L+ I P + V+     + VIPF    VLA++N G+   +AISSI    ++++G+ SN+KY+FLG +RAAAQ +SYEI +   ++ +
Sbjct:   22 VWAIVRILVVSVVILLCVAYLILWERKLIGWMHVRLGPNRVGPGGLLQPIADVLKLLLKEVIQPSAASRWLYLIAPVMTVVPAFAVWAVIPFQAEAVLANVNAGLLYAMAISSIGVYAVILAGWASNSKYAFLGAMRAAAQMVSYEISMGFALVLV 177          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BURCH (NADH-quinone oxidoreductase subunit H OS=Burkholderia cenocepacia (strain HI2424) GN=nuoH PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.404e-24
Identity = 64/166 (38.55%), Postives = 100/166 (60.24%), Query Frame = 3
Query:  135 EVYGILW--VLAPISIYVLAITIGVLV---IVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            E+ G  W  V A + I V+++ I + V   I+W ER++   +  R+GP    P G+LQ +AD  KLL KE + PS  +  L+ I P + V+     + VIPF    VLA++N G+   +AISSI    ++++G+ SN+KY+FLG +RAAAQ +SYEI +   ++ +
Sbjct:   13 ELLGFAWPTVWAVVRILVVSVVILLCVAYLILW-ERKLIGWMHVRLGPNRVGPGGLLQPIADVLKLLLKEVIQPSAASRWLYLIAPVMTVVPAFAVWAVIPFQAEAVLANVNAGLLYAMAISSIGVYAVILAGWASNSKYAFLGAMRAAAQMVSYEISMGFALVLV 177          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BURCC (NADH-quinone oxidoreductase subunit H OS=Burkholderia cenocepacia (strain MC0-3) GN=nuoH PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.404e-24
Identity = 64/166 (38.55%), Postives = 100/166 (60.24%), Query Frame = 3
Query:  135 EVYGILW--VLAPISIYVLAITIGVLV---IVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            E+ G  W  V A + I V+++ I + V   I+W ER++   +  R+GP    P G+LQ +AD  KLL KE + PS  +  L+ I P + V+     + VIPF    VLA++N G+   +AISSI    ++++G+ SN+KY+FLG +RAAAQ +SYEI +   ++ +
Sbjct:   13 ELLGFAWPTVWAVVRILVVSVVILLCVAYLILW-ERKLIGWMHVRLGPNRVGPGGLLQPIADVLKLLLKEVIQPSAASRWLYLIAPVMTVVPAFAVWAVIPFQAEAVLANVNAGLLYAMAISSIGVYAVILAGWASNSKYAFLGAMRAAAQMVSYEISMGFALVLV 177          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BURCA (NADH-quinone oxidoreductase subunit H OS=Burkholderia cenocepacia (strain AU 1054) GN=nuoH PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.404e-24
Identity = 64/166 (38.55%), Postives = 100/166 (60.24%), Query Frame = 3
Query:  135 EVYGILW--VLAPISIYVLAITIGVLV---IVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            E+ G  W  V A + I V+++ I + V   I+W ER++   +  R+GP    P G+LQ +AD  KLL KE + PS  +  L+ I P + V+     + VIPF    VLA++N G+   +AISSI    ++++G+ SN+KY+FLG +RAAAQ +SYEI +   ++ +
Sbjct:   13 ELLGFAWPTVWAVVRILVVSVVILLCVAYLILW-ERKLIGWMHVRLGPNRVGPGGLLQPIADVLKLLLKEVIQPSAASRWLYLIAPVMTVVPAFAVWAVIPFQAEAVLANVNAGLLYAMAISSIGVYAVILAGWASNSKYAFLGAMRAAAQMVSYEISMGFALVLV 177          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH1_GEOSL (NADH-quinone oxidoreductase subunit H 1 OS=Geobacter sulfurreducens GN=nuoH1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.404e-24
Identity = 63/186 (33.87%), Postives = 103/186 (55.38%), Query Frame = 3
Query:  120 LESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLA--------------------DLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            L  L  +Y I  V   + ++V  + + V    + ER+I   +Q R+GP      G+LQ +ADG KL FKE ++PS+ +   F I P IA++   + + VIPF   + +A                    D+N+G+   +A++SI   G++++G+ SN+KYS LGGLR++AQ ISYE+   L ++S+
Sbjct:    5 LFGLPMIYYISMVAKVLVVFVFVL-LTVAYATYAERKIIGHMQVRLGPMRTGWHGLLQPIADGLKLFFKEEIVPSQADKFAFLIAPIIALVPAFIGFAVIPFGETIEVAGYKIPLQIAGYYDTVSGQVVDMNVGVLYILALASIGVYGIVLAGWSSNSKYSLLGGLRSSAQMISYELAAGLAIISV 189          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_MYRTR (NADH-ubiquinone oxidoreductase chain 1 OS=Myrmecophaga tridactyla GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.404e-24
Identity = 57/152 (37.50%), Postives = 94/152 (61.84%), Query Frame = 3
Query:  168 ISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            I+  ++ I + V  +  +ER+    +Q R GP    P G+LQ +AD  KL  KE L P   +  LF++ P++A+   L  +L +P  ++L+  +LN+G+   +AISS+A   +L SG+ SN+KY+ +G LRA AQ++SYE+ L + +LS+ L
Sbjct:    6 IACLIIPILLAVAFLTLVERKTLGYMQVRKGPNIVGPHGLLQPIADAVKLFTKEPLRPLTSSKLLFTVAPTLALTLALTMWLPLPMPHSLI--NLNLGVLFILAISSLAVYSILWSGWASNSKYALIGALRAVAQTVSYEVTLAIILLSVLL 155          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_MONDO (NADH-ubiquinone oxidoreductase chain 1 OS=Monodelphis domestica GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.404e-24
Identity = 59/155 (38.06%), Postives = 92/155 (59.35%), Query Frame = 3
Query:  159 LAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            L  + IY++ I + V  +  +ER++   +Q R GP    P GILQ  AD  KL  KE L P   + S+F I P +A+   L  +  +P  + L+  DLN+G+   +++S ++   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LSI L
Sbjct:    3 LINLLIYIIPILLAVAFLTLIERKVLGYMQLRKGPNVIGPYGILQPFADAVKLFTKEPLRPLTSSISMFIIAPILALTLALTIWTPLPMPHTLI--DLNLGLLFILSLSGLSVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIML 155          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_MACRU (NADH-ubiquinone oxidoreductase chain 1 OS=Macropus rufus GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.404e-24
Identity = 57/150 (38.00%), Postives = 92/150 (61.33%), Query Frame = 3
Query:  174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +Y++ I + V  +  +ER++   +Q R GP    P G+LQ +ADG KL  KE L P   + S+F I P +A+   L  +  +P  + L+  DLN+G+   +++S ++   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LSI L
Sbjct:    8 LYIVPILLAVAFLTLVERKVLGYMQFRKGPNIVGPYGLLQPIADGIKLFTKEPLRPLTSSVSMFIIAPILALTLALTIWTPLPMPHTLI--DLNLGLLFILSLSGLSVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIML 155          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_HIPAM (NADH-ubiquinone oxidoreductase chain 1 OS=Hippopotamus amphibius GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.404e-24
Identity = 62/162 (38.27%), Postives = 97/162 (59.88%), Query Frame = 3
Query:  138 VYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +   L ++API + +  +T+       +ER+I   +Q R GP    P G+LQ  AD  KL  KE L PS  + S+F I P +A+   L  ++ +P  Y L+  ++N+G+   +A+SS+A   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LSI L
Sbjct:    3 IINTLMLVAPILLAMAFLTL-------VERKILGYMQLRKGPNIVGPYGLLQPFADAIKLFTKEPLRPSTSSVSMFIIAPILALTLALTMWIPLPMPYPLI--NMNLGVLFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILL 155          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_XANC5 (NADH-quinone oxidoreductase subunit H OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=nuoH PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.752e-24
Identity = 54/159 (33.96%), Postives = 97/159 (61.01%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +LW +  I +  + + + V   V  ER++   +  R GP Y   +GI QA AD  KLLFKE + P+  + ++F I P + +     ++ V+PF   LVL++ N+G+   +A++S+   G++++G+ SN+KY+FLG +R+AAQ +SYEI +   ++ + +
Sbjct:   25 VLWSVLKILLIAVPVIVAVAFYVVWERKLIGWMHVRHGPMYVG-MGIFQAFADVFKLLFKEIVQPTSSHKAMFVIAPLLTLAPAFAAWSVVPFDAKLVLSNANVGLLYLLAMTSLGVYGIILAGWASNSKYAFLGAMRSAAQVVSYEIAMGFALVGVMI 182          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOH_BURS34.404e-2436.54NADH-quinone oxidoreductase subunit H OS=Burkholde... [more]
NUOH_BURCH4.404e-2438.55NADH-quinone oxidoreductase subunit H OS=Burkholde... [more]
NUOH_BURCC4.404e-2438.55NADH-quinone oxidoreductase subunit H OS=Burkholde... [more]
NUOH_BURCA4.404e-2438.55NADH-quinone oxidoreductase subunit H OS=Burkholde... [more]
NUOH1_GEOSL4.404e-2433.87NADH-quinone oxidoreductase subunit H 1 OS=Geobact... [more]
NU1M_MYRTR4.404e-2437.50NADH-ubiquinone oxidoreductase chain 1 OS=Myrmecop... [more]
NU1M_MONDO4.404e-2438.06NADH-ubiquinone oxidoreductase chain 1 OS=Monodelp... [more]
NU1M_MACRU4.404e-2438.00NADH-ubiquinone oxidoreductase chain 1 OS=Macropus... [more]
NU1M_HIPAM4.404e-2438.27NADH-ubiquinone oxidoreductase chain 1 OS=Hippopot... [more]
NUOH_XANC55.752e-2433.96NADH-quinone oxidoreductase subunit H OS=Xanthomon... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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