CK939407
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BURS3 (NADH-quinone oxidoreductase subunit H OS=Burkholderia sp. (strain 383) GN=nuoH PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 4.404e-24 Identity = 57/156 (36.54%), Postives = 93/156 (59.62%), Query Frame = 3 Query: 150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 +W + I + + I + V ++ ER++ + R+GP P G+LQ +AD KLL KE + PS + L+ I P + V+ + VIPF VLA++N G+ +AISSI ++++G+ SN+KY+FLG +RAAAQ +SYEI + ++ + Sbjct: 22 VWAIVRILVVSVVILLCVAYLILWERKLIGWMHVRLGPNRVGPGGLLQPIADVLKLLLKEVIQPSAASRWLYLIAPVMTVVPAFAVWAVIPFQAEAVLANVNAGLLYAMAISSIGVYAVILAGWASNSKYAFLGAMRAAAQMVSYEISMGFALVLV 177
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BURCH (NADH-quinone oxidoreductase subunit H OS=Burkholderia cenocepacia (strain HI2424) GN=nuoH PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 4.404e-24 Identity = 64/166 (38.55%), Postives = 100/166 (60.24%), Query Frame = 3 Query: 135 EVYGILW--VLAPISIYVLAITIGVLV---IVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 E+ G W V A + I V+++ I + V I+W ER++ + R+GP P G+LQ +AD KLL KE + PS + L+ I P + V+ + VIPF VLA++N G+ +AISSI ++++G+ SN+KY+FLG +RAAAQ +SYEI + ++ + Sbjct: 13 ELLGFAWPTVWAVVRILVVSVVILLCVAYLILW-ERKLIGWMHVRLGPNRVGPGGLLQPIADVLKLLLKEVIQPSAASRWLYLIAPVMTVVPAFAVWAVIPFQAEAVLANVNAGLLYAMAISSIGVYAVILAGWASNSKYAFLGAMRAAAQMVSYEISMGFALVLV 177
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BURCC (NADH-quinone oxidoreductase subunit H OS=Burkholderia cenocepacia (strain MC0-3) GN=nuoH PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 4.404e-24 Identity = 64/166 (38.55%), Postives = 100/166 (60.24%), Query Frame = 3 Query: 135 EVYGILW--VLAPISIYVLAITIGVLV---IVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 E+ G W V A + I V+++ I + V I+W ER++ + R+GP P G+LQ +AD KLL KE + PS + L+ I P + V+ + VIPF VLA++N G+ +AISSI ++++G+ SN+KY+FLG +RAAAQ +SYEI + ++ + Sbjct: 13 ELLGFAWPTVWAVVRILVVSVVILLCVAYLILW-ERKLIGWMHVRLGPNRVGPGGLLQPIADVLKLLLKEVIQPSAASRWLYLIAPVMTVVPAFAVWAVIPFQAEAVLANVNAGLLYAMAISSIGVYAVILAGWASNSKYAFLGAMRAAAQMVSYEISMGFALVLV 177
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BURCA (NADH-quinone oxidoreductase subunit H OS=Burkholderia cenocepacia (strain AU 1054) GN=nuoH PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 4.404e-24 Identity = 64/166 (38.55%), Postives = 100/166 (60.24%), Query Frame = 3 Query: 135 EVYGILW--VLAPISIYVLAITIGVLV---IVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 E+ G W V A + I V+++ I + V I+W ER++ + R+GP P G+LQ +AD KLL KE + PS + L+ I P + V+ + VIPF VLA++N G+ +AISSI ++++G+ SN+KY+FLG +RAAAQ +SYEI + ++ + Sbjct: 13 ELLGFAWPTVWAVVRILVVSVVILLCVAYLILW-ERKLIGWMHVRLGPNRVGPGGLLQPIADVLKLLLKEVIQPSAASRWLYLIAPVMTVVPAFAVWAVIPFQAEAVLANVNAGLLYAMAISSIGVYAVILAGWASNSKYAFLGAMRAAAQMVSYEISMGFALVLV 177
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH1_GEOSL (NADH-quinone oxidoreductase subunit H 1 OS=Geobacter sulfurreducens GN=nuoH1 PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 4.404e-24 Identity = 63/186 (33.87%), Postives = 103/186 (55.38%), Query Frame = 3 Query: 120 LESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLA--------------------DLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 L L +Y I V + ++V + + V + ER+I +Q R+GP G+LQ +ADG KL FKE ++PS+ + F I P IA++ + + VIPF + +A D+N+G+ +A++SI G++++G+ SN+KYS LGGLR++AQ ISYE+ L ++S+ Sbjct: 5 LFGLPMIYYISMVAKVLVVFVFVL-LTVAYATYAERKIIGHMQVRLGPMRTGWHGLLQPIADGLKLFFKEEIVPSQADKFAFLIAPIIALVPAFIGFAVIPFGETIEVAGYKIPLQIAGYYDTVSGQVVDMNVGVLYILALASIGVYGIVLAGWSSNSKYSLLGGLRSSAQMISYELAAGLAIISV 189
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_MYRTR (NADH-ubiquinone oxidoreductase chain 1 OS=Myrmecophaga tridactyla GN=MT-ND1 PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 4.404e-24 Identity = 57/152 (37.50%), Postives = 94/152 (61.84%), Query Frame = 3 Query: 168 ISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 I+ ++ I + V + +ER+ +Q R GP P G+LQ +AD KL KE L P + LF++ P++A+ L +L +P ++L+ +LN+G+ +AISS+A +L SG+ SN+KY+ +G LRA AQ++SYE+ L + +LS+ L Sbjct: 6 IACLIIPILLAVAFLTLVERKTLGYMQVRKGPNIVGPHGLLQPIADAVKLFTKEPLRPLTSSKLLFTVAPTLALTLALTMWLPLPMPHSLI--NLNLGVLFILAISSLAVYSILWSGWASNSKYALIGALRAVAQTVSYEVTLAIILLSVLL 155
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_MONDO (NADH-ubiquinone oxidoreductase chain 1 OS=Monodelphis domestica GN=MT-ND1 PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 4.404e-24 Identity = 59/155 (38.06%), Postives = 92/155 (59.35%), Query Frame = 3 Query: 159 LAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 L + IY++ I + V + +ER++ +Q R GP P GILQ AD KL KE L P + S+F I P +A+ L + +P + L+ DLN+G+ +++S ++ +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LSI L Sbjct: 3 LINLLIYIIPILLAVAFLTLIERKVLGYMQLRKGPNVIGPYGILQPFADAVKLFTKEPLRPLTSSISMFIIAPILALTLALTIWTPLPMPHTLI--DLNLGLLFILSLSGLSVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIML 155
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_MACRU (NADH-ubiquinone oxidoreductase chain 1 OS=Macropus rufus GN=MT-ND1 PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 4.404e-24 Identity = 57/150 (38.00%), Postives = 92/150 (61.33%), Query Frame = 3 Query: 174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 +Y++ I + V + +ER++ +Q R GP P G+LQ +ADG KL KE L P + S+F I P +A+ L + +P + L+ DLN+G+ +++S ++ +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LSI L Sbjct: 8 LYIVPILLAVAFLTLVERKVLGYMQFRKGPNIVGPYGLLQPIADGIKLFTKEPLRPLTSSVSMFIIAPILALTLALTIWTPLPMPHTLI--DLNLGLLFILSLSGLSVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIML 155
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_HIPAM (NADH-ubiquinone oxidoreductase chain 1 OS=Hippopotamus amphibius GN=MT-ND1 PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 4.404e-24 Identity = 62/162 (38.27%), Postives = 97/162 (59.88%), Query Frame = 3 Query: 138 VYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 + L ++API + + +T+ +ER+I +Q R GP P G+LQ AD KL KE L PS + S+F I P +A+ L ++ +P Y L+ ++N+G+ +A+SS+A +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LSI L Sbjct: 3 IINTLMLVAPILLAMAFLTL-------VERKILGYMQLRKGPNIVGPYGLLQPFADAIKLFTKEPLRPSTSSVSMFIIAPILALTLALTMWIPLPMPYPLI--NMNLGVLFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILL 155
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_XANC5 (NADH-quinone oxidoreductase subunit H OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=nuoH PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 5.752e-24 Identity = 54/159 (33.96%), Postives = 97/159 (61.01%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 +LW + I + + + + V V ER++ + R GP Y +GI QA AD KLLFKE + P+ + ++F I P + + ++ V+PF LVL++ N+G+ +A++S+ G++++G+ SN+KY+FLG +R+AAQ +SYEI + ++ + + Sbjct: 25 VLWSVLKILLIAVPVIVAVAFYVVWERKLIGWMHVRHGPMYVG-MGIFQAFADVFKLLFKEIVQPTSSHKAMFVIAPLLTLAPAFAAWSVVPFDAKLVLSNANVGLLYLLAMTSLGVYGIILAGWASNSKYAFLGAMRSAAQVVSYEIAMGFALVGVMI 182 The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bpback to top |