CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_NICSY (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nicotiana sylvestris GN=ndhA PE=3 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 2.151e-79
Identity = 152/184 (82.61%), Postives = 166/184 (90.22%), Query Frame = 3
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII T E++ INSFS+LESL+EVYGI+W+L PI   VL ITIGVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLL KENL+PS G++ LFSIGPSIAVI+I LSY VIPF  +LVLADL+IG+F WIAISSIAP+GLLMSGYGSNNKYSFLGGLRAAAQSISYEIPL LCVLSISL
Sbjct:    1 MIIDTTEIETINSFSKLESLKEVYGIIWMLFPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLLKENLIPSTGDTRLFSIGPSIAVISIFLSYSVIPFGDHLVLADLSIGVFFWIAISSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISL 184          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_SPIOL (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Spinacia oleracea GN=ndhA PE=3 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 3.669e-79
Identity = 153/180 (85.00%), Postives = 164/180 (91.11%), Query Frame = 3
Query:   84 TPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            T +VQ INSFSRLE L+EVY  +W+L PI I VL ITIGVLVIVWLEREISA IQQRIGPEYA PLGILQALADGTKLLFKENLLPSRG++ LFSIGPSIAVI+ILL YL+IPF   LVLADL+IG+FLWIA+SSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    7 TTKVQAINSFSRLEFLKEVYETIWMLFPILILVLGITIGVLVIVWLEREISASIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSRGDTYLFSIGPSIAVISILLGYLIIPFGSRLVLADLSIGVFLWIAVSSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 186          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_ARAHI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Arabis hirsuta GN=ndhA PE=3 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 1.067e-78
Identity = 152/184 (82.61%), Postives = 164/184 (89.13%), Query Frame = 3
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII   EV+ INSF RLESL+E+Y ++W+  PI   VL I  GVLVI W+ERE+SAGIQQRIGPEYA PLGILQALADGTKLLFKE+L PSRGN+ LFSIGPSIAVI+ILLSY VIPFS +LVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIYATEVETINSFVRLESLKELYSLVWIFVPIFSLVLGIITGVLVIAWIERELSAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLRPSRGNTPLFSIGPSIAVISILLSYSVIPFSNHLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_NANDO (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nandina domestica GN=ndhA PE=3 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 2.378e-78
Identity = 153/185 (82.70%), Postives = 168/185 (90.81%), Query Frame = 3
Query:   72 MIIATPEVQD-INSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII T +VQ  INSFSR ESL+EVYG++W+L PI   +L I IGVLVIVWLER+ISAG+QQRIGPEYA PLGILQALADGTKLLFKE+LLPSRG+  LFS+GPSIAVI+ILLSY VIPF Y+LVLADL+IG+FLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLT CVLSISL
Sbjct:    1 MIIDTTKVQQAINSFSRSESLKEVYGLIWLLVPIFTPLLGIIIGVLVIVWLERQISAGVQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDILLFSLGPSIAVISILLSYSVIPFGYHLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTPCVLSISL 185          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_ILLOL (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Illicium oligandrum GN=ndhA PE=3 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 2.378e-78
Identity = 151/186 (81.18%), Postives = 165/186 (88.71%), Query Frame = 3
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            MII T EVQ INSFSR ES +E YG++W+L PI   V  I IGVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKE+LLPSRG+  LFS+GPSIAVI+ILLSY VIPF Y L++AD++IG+FLWIAISSIAPIGLLMSGYGSNNKYSF GGLRAAAQSISYEIPLT CVLSISLR+
Sbjct:    1 MIIDTTEVQAINSFSRSESSKEFYGLIWLLVPIFTPVSGILIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSVGPSIAVISILLSYSVIPFGYRLIIADISIGVFLWIAISSIAPIGLLMSGYGSNNKYSFSGGLRAAAQSISYEIPLTPCVLSISLRL 186          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_AMBTC (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Amborella trichopoda GN=ndhA PE=3 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 3.106e-78
Identity = 152/184 (82.61%), Postives = 164/184 (89.13%), Query Frame = 3
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII T EVQ INSFSRLES +EVYG++W+  PI   V  ITIGVLVIVWLEREISAGIQQRIGPEYA PLGILQA+ADGTKLLFKE+LLPSRG+  LFSIGPS+ VI+ILLS+LVIPF Y LVLADL+IG+ LWIAISSIAPIGLLMSGY SNNKYSF GGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIDTTEVQAINSFSRLESSKEVYGLIWLFIPIFTPVSGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQAIADGTKLLFKEDLLPSRGDIRLFSIGPSVVVISILLSHLVIPFGYRLVLADLSIGVSLWIAISSIAPIGLLMSGYASNNKYSFSGGLRAAAQSISYEIPLTLCVLSISL 184          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_DRIGR (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Drimys granadensis GN=ndhA PE=3 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 5.297e-78
Identity = 155/184 (84.24%), Postives = 164/184 (89.13%), Query Frame = 3
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII T EVQ INSFSR ESL+E YG++ +L PI   V  ITIGVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKE+LLPSRG+  LFSIGPSIAVI+ILLSY VIPF Y LVLADL+IG+FLWIAISSIAPIGLLMSGYGSNNKYSF GGLRAAAQSISYEIPLT CVLSISL
Sbjct:    1 MIIDTTEVQAINSFSRSESLKEGYGLIGMLVPIFTPVSGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISILLSYSVIPFGYRLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFSGGLRAAAQSISYEIPLTPCVLSISL 184          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_PHAVU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Phaseolus vulgaris GN=ndhA PE=3 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.541e-77
Identity = 145/184 (78.80%), Postives = 161/184 (87.50%), Query Frame = 3
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII   E+QDI+ F RLE  +E+Y ILWV  PI I+++ ITI VL IVWLEREISAGIQQRIGPEY  P G+LQALADGTKLLFKENL+PSRG+  LFS GP+I+VI+I+LSY VIPF YN VL+DLNIG+FLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIDLTEIQDIHFFFRLEFFKEIYEILWVFVPILIFIVGITISVLAIVWLEREISAGIQQRIGPEYTGPFGVLQALADGTKLLFKENLIPSRGDIRLFSFGPAISVISIILSYSVIPFGYNFVLSDLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_AETCO (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Aethionema cordifolium GN=ndhA PE=3 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 1.305e-76
Identity = 150/184 (81.52%), Postives = 161/184 (87.50%), Query Frame = 3
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII   EVQ INSF RLES +EVYG++W   PI   V+ I  GVLV+VWLEREISA IQQRIGPEYA  LGILQALADG KLLFKENL PSRGN++LFSIGPS+AVI+ILLSY VIPFS +LVLAD NIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLC+LSISL
Sbjct:    1 MIIFATEVQTINSFVRLESFKEVYGLIWGFLPIFSLVVGIVTGVLVLVWLEREISARIQQRIGPEYAGALGILQALADGIKLLFKENLRPSRGNTTLFSIGPSLAVISILLSYSVIPFSNHLVLADFNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCLLSISL 184          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_NYMAL (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nymphaea alba GN=ndhA PE=3 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.884e-75
Identity = 144/178 (80.90%), Postives = 159/178 (89.33%), Query Frame = 3
Query:   90 EVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            E Q INSF R ES +EVYG++W+L PI   VL ITIGVLVIVWLER+ISAGIQ+RIGPEYA PLGILQALADG KLLFKE+LLPSRG+  LFS+GPS+AV++ILLSY VIPF Y+LVL DL+IG+FLWIAISSIAPIGLLMSGYGSNNKYSF GGLRAAAQSISYEIPLT CVLSISL
Sbjct:    5 EAQAINSFFRSESSKEVYGLIWLLVPILTLVLGITIGVLVIVWLERKISAGIQRRIGPEYAGPLGILQALADGVKLLFKEDLLPSRGDIRLFSVGPSVAVVSILLSYSVIPFGYHLVLTDLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFSGGLRAAAQSISYEIPLTPCVLSISL 182          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1C_NICSY2.151e-7982.61NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_SPIOL3.669e-7985.00NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_ARAHI1.067e-7882.61NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_NANDO2.378e-7882.70NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_ILLOL2.378e-7881.18NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_AMBTC3.106e-7882.61NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_DRIGR5.297e-7884.24NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_PHAVU1.541e-7778.80NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_AETCO1.305e-7681.52NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_NYMAL1.884e-7580.90NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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