CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_THERP (NADH-quinone oxidoreductase subunit H OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=nuoH PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.752e-24
Identity = 55/160 (34.38%), Postives = 93/160 (58.13%), Query Frame = 3
Query:  168 ISIYVLAITIGVLV-IVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPF---------SYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +   +L + +G++  + W ER + A +Q R+GP    P G+LQ +ADG KLL KE+++P+  +  +F + P ++     L   VIPF            L++AD+N+ +   +A+ S+   G+++ GY S N+YS LG LR+ AQ ISYE+ L L ++ +
Sbjct:   12 VGFVLLNVLLGLMAYMTWFERRVLARMQHRVGPNRTGPFGLLQPIADGIKLLAKEDIVPANADRLVFLVAPLLSFALAPLGAAVIPFGDTLQLFGIEIPLLVADINVAVLYVLALGSVGVYGIILGGYASGNRYSLLGALRSTAQVISYELVLGLSLVGV 171          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_PSEMY (NADH-quinone oxidoreductase subunit H OS=Pseudomonas mendocina (strain ymp) GN=nuoH PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.752e-24
Identity = 57/165 (34.55%), Postives = 98/165 (59.39%), Query Frame = 3
Query:  135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            E+  IL  +    + +LA+ +   ++ ++ER +    Q R GP    P G+ Q  AD  K+ FKE+  P   +  +F + P IA  A+L+++ +IP +    +ADLNIGI  + A++ ++   +L +G+ SNNK++ LG LRA+AQ+ISYE+ L L ++ +  +V
Sbjct:    7 ELIEILVAVLKAIVILLAVVVCGALLSFVERRLLGWWQDRYGPNRVGPFGMFQIAADMIKMFFKEDWTPPFADRFIFVLAPMIAFAAMLMAFAIIPITPTWGVADLNIGILFFFAMAGLSVYAVLFAGWSSNNKFALLGSLRASAQTISYEVFLALALMGVVAQV 171          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_GEOTN (NADH-quinone oxidoreductase subunit H OS=Geobacillus thermodenitrificans (strain NG80-2) GN=nuoH PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.752e-24
Identity = 59/150 (39.33%), Postives = 90/150 (60.00%), Query Frame = 3
Query:  180 VLAITIG-VLVIVWLEREISAGIQQRIGP-EYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +L + +G V   +  ER++   +Q RIGP +    LG+LQ +AD  KLL KE+ +P   +  L+ + P IA     +    +PF+     AD+ +G+  +IA+S +  IG++  G+ SNNKY+ LGG+RAAAQ ISYEIPL +  L + L
Sbjct:   24 LLLVVLGFVTYAILAERKVMGFMQGRIGPNQVGGRLGLLQTVADVLKLLLKEDTIPKAADRPLYVLAPIIAFTPSFMVLAALPFTDAFRFADIGVGLLYYIAVSGLTTIGVVTGGWASNNKYALLGGMRAAAQMISYEIPLVMSALGVVL 173          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_CHRSD (NADH-quinone oxidoreductase subunit H OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=nuoH PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.752e-24
Identity = 56/161 (34.78%), Postives = 99/161 (61.49%), Query Frame = 3
Query:  135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +V  I + L    + +LA      ++  +ER +    Q R GP    P G+LQ +AD  K++FKE+ +P   +  LF + P+IA+ ++LLS++VIP + +  +ADL+IG+  + A++ I    +L +G+ S NKY+ LG +RA+AQ++SYE+ + L ++ +
Sbjct:    7 QVAAIAFALFQAVVILLAAVGAAALLTMVERRLLGLWQDRHGPNRVGPFGVLQIVADMLKIVFKEDWIPPFADRGLFVLAPAIAMASLLLSFMVIPITPSWGVADLHIGLLFFFAMAGINVYAVLFAGWSSGNKYALLGAMRASAQTLSYEVFMGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_ANOFW (NADH-quinone oxidoreductase subunit H OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=nuoH PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.752e-24
Identity = 60/155 (38.71%), Postives = 92/155 (59.35%), Query Frame = 3
Query:  186 AITIGVLVIVW--------LEREISAGIQQRIGP-EYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            AI +G+L++V          ER++   +Q RIGP +     G+LQ +AD  KLL KE+ +P   +  LF + P IA     +    +PF+  L  AD+ +G+  +IA+S +  IG++   + SNNKY+ LGG+RAAAQ ISYE+PL + V+ + L
Sbjct:   20 AIGVGLLLVVLGFVTYGILAERKVMGFMQGRIGPNQVGGRWGLLQTVADVLKLLLKEDTIPKAADRPLFILAPVIAFAPAFMVLAALPFTDALQFADIGVGLLYYIAVSGLTTIGVVTGAWASNNKYALLGGMRAAAQMISYEVPLVMSVIGVIL 174          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_VARBA (NADH-ubiquinone oxidoreductase chain 1 OS=Varanus baritji GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.752e-24
Identity = 59/147 (40.14%), Postives = 91/147 (61.90%), Query Frame = 3
Query:  174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLS 614
            +Y++ I I V  +   ER+I   +Q R GP    P G+LQ +ADG KL  KE + P   + +L  + P +A+ A +L +  IP  Y+  LA+LN+G+   +AIS +A   +L +G+ SN+KY+ +G LRA AQ+ISYE+ L + +LS
Sbjct:   12 MYIIPILIAVAFLTLTERKILGYMQHRKGPNITGPHGLLQPIADGLKLFIKEPVRPLNASPTLLILSPLLAITAAMLIWAPIPMPYS--LANLNLGLLSILAISGMAVNSILWAGWASNSKYALIGSLRAVAQTISYEVTLGIILLS 156          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_STRCA (NADH-ubiquinone oxidoreductase chain 1 OS=Struthio camelus GN=MT-ND1 PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 5.752e-24
Identity = 55/147 (37.41%), Postives = 92/147 (62.59%), Query Frame = 3
Query:  177 YVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            Y + I I V  +  +ER++ + +Q R GP    P G+LQ +ADG KL  KE + P+  +  LF   P +A++  +  ++ +P  ++L   DLN+G+   +++SS+A   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LS+
Sbjct:   15 YAVPILIAVAFLTLVERKVLSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPVRPTTSSPILFIATPILALLLAITIWIPLPLPFSLT--DLNLGLLFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSV 159          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_SHEEP (NADH-ubiquinone oxidoreductase chain 1 OS=Ovis aries GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.752e-24
Identity = 55/148 (37.16%), Postives = 92/148 (62.16%), Query Frame = 3
Query:  180 VLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++ I + V  +  +ER++   +Q R GP    P G+LQ +AD  KL  KE L P+  + S+F + P +A+   L  ++ +P  Y L+  ++N+G+   +A+SS+A   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LS+ L
Sbjct:   10 IIPILLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPIADAIKLFIKEPLRPATSSISMFILAPILALTLALTMWIPLPMPYPLI--NMNLGVLFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLL 155          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_CROLA (NADH-ubiquinone oxidoreductase chain 1 OS=Crossostoma lacustre GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.752e-24
Identity = 56/147 (38.10%), Postives = 91/147 (61.90%), Query Frame = 3
Query:  177 YVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            Y++ + + V  +  LER++   +Q R GP    P G+LQ +ADG KL  KE + PS  + +LF + P +A+   +  +  +P  + ++  DLN+G+   +A+SS+A   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L L + SI
Sbjct:   15 YIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPIRPSTASPTLFLVTPMLALTLAMTLWAPMPMPHPII--DLNLGVLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILRSI 159          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_PSEPW (NADH-quinone oxidoreductase subunit H OS=Pseudomonas putida (strain W619) GN=nuoH PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.513e-24
Identity = 54/165 (32.73%), Postives = 100/165 (60.61%), Query Frame = 3
Query:  135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            EV  ++  +    + +LA+ +   ++ ++ER +    Q R GP    P G+ Q  AD  K+ FKE+  P   +  +F++ P +A+ A+L+ + +IP +    +ADLNIG+  + A++ ++   +L +G+ SNNKY+ LG LRA+AQ++SYE+ L L ++ + ++V
Sbjct:    7 EVIDVIIQVVKAIVVLLAVVVCGALLSFVERRLLGWWQDRYGPNRVGPFGMFQIAADMLKMFFKEDWNPPFVDKMIFTLAPVVAMSALLIGFSIIPITPGWGVADLNIGLLFFFAMAGLSVYAVLFAGWSSNNKYALLGSLRASAQTVSYEVFLGLALMGVVVQV 171          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOH_THERP5.752e-2434.38NADH-quinone oxidoreductase subunit H OS=Thermomic... [more]
NUOH_PSEMY5.752e-2434.55NADH-quinone oxidoreductase subunit H OS=Pseudomon... [more]
NUOH_GEOTN5.752e-2439.33NADH-quinone oxidoreductase subunit H OS=Geobacill... [more]
NUOH_CHRSD5.752e-2434.78NADH-quinone oxidoreductase subunit H OS=Chromohal... [more]
NUOH_ANOFW5.752e-2438.71NADH-quinone oxidoreductase subunit H OS=Anoxybaci... [more]
NU1M_VARBA5.752e-2440.14NADH-ubiquinone oxidoreductase chain 1 OS=Varanus ... [more]
NU1M_STRCA5.752e-2437.41NADH-ubiquinone oxidoreductase chain 1 OS=Struthio... [more]
NU1M_SHEEP5.752e-2437.16NADH-ubiquinone oxidoreductase chain 1 OS=Ovis ari... [more]
NU1M_CROLA5.752e-2438.10NADH-ubiquinone oxidoreductase chain 1 OS=Crossost... [more]
NUOH_PSEPW7.513e-2432.73NADH-quinone oxidoreductase subunit H OS=Pseudomon... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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