CK939407
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_THERP (NADH-quinone oxidoreductase subunit H OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=nuoH PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 5.752e-24 Identity = 55/160 (34.38%), Postives = 93/160 (58.13%), Query Frame = 3 Query: 168 ISIYVLAITIGVLV-IVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPF---------SYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 + +L + +G++ + W ER + A +Q R+GP P G+LQ +ADG KLL KE+++P+ + +F + P ++ L VIPF L++AD+N+ + +A+ S+ G+++ GY S N+YS LG LR+ AQ ISYE+ L L ++ + Sbjct: 12 VGFVLLNVLLGLMAYMTWFERRVLARMQHRVGPNRTGPFGLLQPIADGIKLLAKEDIVPANADRLVFLVAPLLSFALAPLGAAVIPFGDTLQLFGIEIPLLVADINVAVLYVLALGSVGVYGIILGGYASGNRYSLLGALRSTAQVISYELVLGLSLVGV 171
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_PSEMY (NADH-quinone oxidoreductase subunit H OS=Pseudomonas mendocina (strain ymp) GN=nuoH PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 5.752e-24 Identity = 57/165 (34.55%), Postives = 98/165 (59.39%), Query Frame = 3 Query: 135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629 E+ IL + + +LA+ + ++ ++ER + Q R GP P G+ Q AD K+ FKE+ P + +F + P IA A+L+++ +IP + +ADLNIGI + A++ ++ +L +G+ SNNK++ LG LRA+AQ+ISYE+ L L ++ + +V Sbjct: 7 ELIEILVAVLKAIVILLAVVVCGALLSFVERRLLGWWQDRYGPNRVGPFGMFQIAADMIKMFFKEDWTPPFADRFIFVLAPMIAFAAMLMAFAIIPITPTWGVADLNIGILFFFAMAGLSVYAVLFAGWSSNNKFALLGSLRASAQTISYEVFLALALMGVVAQV 171
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_GEOTN (NADH-quinone oxidoreductase subunit H OS=Geobacillus thermodenitrificans (strain NG80-2) GN=nuoH PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 5.752e-24 Identity = 59/150 (39.33%), Postives = 90/150 (60.00%), Query Frame = 3 Query: 180 VLAITIG-VLVIVWLEREISAGIQQRIGP-EYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 +L + +G V + ER++ +Q RIGP + LG+LQ +AD KLL KE+ +P + L+ + P IA + +PF+ AD+ +G+ +IA+S + IG++ G+ SNNKY+ LGG+RAAAQ ISYEIPL + L + L Sbjct: 24 LLLVVLGFVTYAILAERKVMGFMQGRIGPNQVGGRLGLLQTVADVLKLLLKEDTIPKAADRPLYVLAPIIAFTPSFMVLAALPFTDAFRFADIGVGLLYYIAVSGLTTIGVVTGGWASNNKYALLGGMRAAAQMISYEIPLVMSALGVVL 173
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_CHRSD (NADH-quinone oxidoreductase subunit H OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=nuoH PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 5.752e-24 Identity = 56/161 (34.78%), Postives = 99/161 (61.49%), Query Frame = 3 Query: 135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 +V I + L + +LA ++ +ER + Q R GP P G+LQ +AD K++FKE+ +P + LF + P+IA+ ++LLS++VIP + + +ADL+IG+ + A++ I +L +G+ S NKY+ LG +RA+AQ++SYE+ + L ++ + Sbjct: 7 QVAAIAFALFQAVVILLAAVGAAALLTMVERRLLGLWQDRHGPNRVGPFGVLQIVADMLKIVFKEDWIPPFADRGLFVLAPAIAMASLLLSFMVIPITPSWGVADLHIGLLFFFAMAGINVYAVLFAGWSSGNKYALLGAMRASAQTLSYEVFMGLSLMGV 167
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_ANOFW (NADH-quinone oxidoreductase subunit H OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=nuoH PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 5.752e-24 Identity = 60/155 (38.71%), Postives = 92/155 (59.35%), Query Frame = 3 Query: 186 AITIGVLVIVW--------LEREISAGIQQRIGP-EYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 AI +G+L++V ER++ +Q RIGP + G+LQ +AD KLL KE+ +P + LF + P IA + +PF+ L AD+ +G+ +IA+S + IG++ + SNNKY+ LGG+RAAAQ ISYE+PL + V+ + L Sbjct: 20 AIGVGLLLVVLGFVTYGILAERKVMGFMQGRIGPNQVGGRWGLLQTVADVLKLLLKEDTIPKAADRPLFILAPVIAFAPAFMVLAALPFTDALQFADIGVGLLYYIAVSGLTTIGVVTGAWASNNKYALLGGMRAAAQMISYEVPLVMSVIGVIL 174
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_VARBA (NADH-ubiquinone oxidoreductase chain 1 OS=Varanus baritji GN=MT-ND1 PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 5.752e-24 Identity = 59/147 (40.14%), Postives = 91/147 (61.90%), Query Frame = 3 Query: 174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLS 614 +Y++ I I V + ER+I +Q R GP P G+LQ +ADG KL KE + P + +L + P +A+ A +L + IP Y+ LA+LN+G+ +AIS +A +L +G+ SN+KY+ +G LRA AQ+ISYE+ L + +LS Sbjct: 12 MYIIPILIAVAFLTLTERKILGYMQHRKGPNITGPHGLLQPIADGLKLFIKEPVRPLNASPTLLILSPLLAITAAMLIWAPIPMPYS--LANLNLGLLSILAISGMAVNSILWAGWASNSKYALIGSLRAVAQTISYEVTLGIILLS 156
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_STRCA (NADH-ubiquinone oxidoreductase chain 1 OS=Struthio camelus GN=MT-ND1 PE=3 SV=2) HSP 1 Score: 111.694 bits (278), Expect = 5.752e-24 Identity = 55/147 (37.41%), Postives = 92/147 (62.59%), Query Frame = 3 Query: 177 YVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 Y + I I V + +ER++ + +Q R GP P G+LQ +ADG KL KE + P+ + LF P +A++ + ++ +P ++L DLN+G+ +++SS+A +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LS+ Sbjct: 15 YAVPILIAVAFLTLVERKVLSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPVRPTTSSPILFIATPILALLLAITIWIPLPLPFSLT--DLNLGLLFLLSMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSV 159
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_SHEEP (NADH-ubiquinone oxidoreductase chain 1 OS=Ovis aries GN=MT-ND1 PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 5.752e-24 Identity = 55/148 (37.16%), Postives = 92/148 (62.16%), Query Frame = 3 Query: 180 VLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 ++ I + V + +ER++ +Q R GP P G+LQ +AD KL KE L P+ + S+F + P +A+ L ++ +P Y L+ ++N+G+ +A+SS+A +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LS+ L Sbjct: 10 IIPILLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPIADAIKLFIKEPLRPATSSISMFILAPILALTLALTMWIPLPMPYPLI--NMNLGVLFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLL 155
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_CROLA (NADH-ubiquinone oxidoreductase chain 1 OS=Crossostoma lacustre GN=MT-ND1 PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 5.752e-24 Identity = 56/147 (38.10%), Postives = 91/147 (61.90%), Query Frame = 3 Query: 177 YVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 Y++ + + V + LER++ +Q R GP P G+LQ +ADG KL KE + PS + +LF + P +A+ + + +P + ++ DLN+G+ +A+SS+A +L SG+ SN+KY+ +G LRA AQ+ISYE+ L L + SI Sbjct: 15 YIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPIRPSTASPTLFLVTPMLALTLAMTLWAPMPMPHPII--DLNLGVLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILRSI 159
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_PSEPW (NADH-quinone oxidoreductase subunit H OS=Pseudomonas putida (strain W619) GN=nuoH PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 7.513e-24 Identity = 54/165 (32.73%), Postives = 100/165 (60.61%), Query Frame = 3 Query: 135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629 EV ++ + + +LA+ + ++ ++ER + Q R GP P G+ Q AD K+ FKE+ P + +F++ P +A+ A+L+ + +IP + +ADLNIG+ + A++ ++ +L +G+ SNNKY+ LG LRA+AQ++SYE+ L L ++ + ++V Sbjct: 7 EVIDVIIQVVKAIVVLLAVVVCGALLSFVERRLLGWWQDRYGPNRVGPFGMFQIAADMLKMFFKEDWNPPFVDKMIFTLAPVVAMSALLIGFSIIPITPGWGVADLNIGLLFFFAMAGLSVYAVLFAGWSSNNKYALLGSLRASAQTVSYEVFLGLALMGVVVQV 171 The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bpback to top |