CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_PSEPG (NADH-quinone oxidoreductase subunit H OS=Pseudomonas putida (strain GB-1) GN=nuoH PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.513e-24
Identity = 54/165 (32.73%), Postives = 100/165 (60.61%), Query Frame = 3
Query:  135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            EV  ++  +    + +LA+ +   ++ ++ER +    Q R GP    P G+ Q  AD  K+ FKE+  P   +  +F++ P +A+ A+L+ + +IP +    +ADLNIG+  + A++ ++   +L +G+ SNNKY+ LG LRA+AQ++SYE+ L L ++ + ++V
Sbjct:    7 EVIDVIIQVVKAIVVLLAVVVCGALLSFVERRLLGWWQDRYGPNRVGPFGMFQIAADMLKMFFKEDWNPPFVDKMIFTLAPVVAMSALLIGFSIIPITPGWGVADLNIGLLFFFAMAGLSVYAVLFAGWSSNNKYALLGSLRASAQTVSYEVFLGLALMGVVVQV 171          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_PELCD (NADH-quinone oxidoreductase subunit H OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=nuoH PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.513e-24
Identity = 63/168 (37.50%), Postives = 101/168 (60.12%), Query Frame = 3
Query:  168 ISIYVLAITIGVLV---------IVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPF---------SYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +++ ++ I +G+++         +V  ER+I   +Q R GP      G+LQ LAD  KLL KE+L+P R +  +F + P+I+ I  LL++ VIPF         S  +V+ DLNIG+    A+SS+A  G+ + G+ S++KY+ LGGLRA AQ ISYE+ + L ++ +
Sbjct:    6 LTLILIVIKLGLVLGTVLTLAAYMVLAERKILGRMQMRYGPNRVGWGGMLQPLADLIKLLCKEDLIPQRADRWVFMLAPAISTITALLAFAVIPFGAPLQLFDRSLPMVICDLNIGLLYLFALSSLAVYGVALGGWASHSKYALLGGLRAMAQMISYELAMGLAIVPV 173          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_HELAH (NADH-quinone oxidoreductase subunit H OS=Helicobacter acinonychis (strain Sheeba) GN=nuoH PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.513e-24
Identity = 56/169 (33.14%), Postives = 96/169 (56.80%), Query Frame = 3
Query:  168 ISIYVLAITIGVLVIV-----------WLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNL---------VLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLS 614
            +S Y++   I +L++V           ++ER++ A  Q+R+GP Y  P G+LQ  ADG KL  KE+++P   N  +F++ P IA+++  +S   IPF  N          +++D+NIG   ++A+ +      +++G  SNNKYS +G  RA  Q +S+E+  TL +L+
Sbjct:    1 MSAYIIETLIKILILVAVFSALGGFATYIERKVLAYFQRRLGPSYVGPFGLLQVAADGIKLFTKEDIIPQGANKLIFTLAPIIAMVSAFVSMAPIPFFPNFTLFGYEIKPIISDINIGFLFFLAVGAAGIYAPILAGLASNNKYSLIGSARATIQLLSFEVVSTLTILA 169          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BAUCH (NADH-quinone oxidoreductase subunit H OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=nuoH PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.513e-24
Identity = 59/157 (37.58%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L ++  I   +  +TIG  +  + ER +    Q R GP      G LQ LAD  K+LFKE+ +P   +  +F++ P IA  ++LL + ++P S N V+ +LNIGI  ++ ++ I+   +L+ G+ SNNKYS LG +RAAAQ++SYE+ L L ++ +
Sbjct:    9 LLAIVKAIVTLLSVVTIGAYMS-FFERRLLGLFQHRYGPNRVGWGGSLQLLADTIKILFKEDWIPPFADRIIFTLAPIIAFTSLLLVFAIMPISPNWVVIELNIGILFFLMMAGISVYAILLGGWSSNNKYSLLGAMRAAAQTLSYEVFLGLSIMGV 164          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BARHE (NADH-quinone oxidoreductase subunit H OS=Bartonella henselae GN=nuoH PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.513e-24
Identity = 52/162 (32.10%), Postives = 100/162 (61.73%), Query Frame = 3
Query:  138 VYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++ +L ++    + ++ + + V  +++ +R+I A +Q R GP    P G+LQ+ AD  K + KE ++P+  N  +F + P ++    L ++ VIP +    +A++N+G+   +AISS+   G++M G+ SN+KY FLG LR+AAQ +SYE+ +   ++++ L
Sbjct:   10 LFPLLIIVGKTLLLLVILLLLVAYLLYADRKIWAAVQLRRGPNVVGPWGLLQSFADLIKFVVKEPIIPAGANKGVFLLAPFVSATLALSTWAVIPVNEGWAVANINVGLLYILAISSLEVYGVIMGGWASNSKYPFLGALRSAAQMVSYEVSIGFVLVTVIL 171          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_VOMUR (NADH-ubiquinone oxidoreductase chain 1 OS=Vombatus ursinus GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.513e-24
Identity = 57/150 (38.00%), Postives = 91/150 (60.67%), Query Frame = 3
Query:  174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +Y++ I + V  +  +ER++   +Q R GP    P G+LQ +AD  KL  KE L P   + S+F I P +A+   L  +  +P  + L+  DLN+G+   +A+S ++   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LSI L
Sbjct:    8 LYIVPILLAVAFLTLVERKVLGYMQFRKGPNIVGPYGLLQPIADAVKLFTKEPLRPLTSSISMFIIAPILALTIALTIWTPLPMPHTLI--DLNLGLLFILALSGLSVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIML 155          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_SQUAC (NADH-ubiquinone oxidoreductase chain 1 OS=Squalus acanthias GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.513e-24
Identity = 58/157 (36.94%), Postives = 99/157 (63.06%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L+++ P++ Y++ I +    +  +ER+I   +Q R GP    P G+LQ +ADG KL  KE + PS  +  LF   P++A+   LL ++ +P  + ++  +LN+G+   +A+SS+    +L SG+ SN+KY+ +G LRA AQ+ISYE+ L L +LS+
Sbjct:    6 LLYLINPLA-YIVPILLATAFLTLVERKILGYMQFRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPTLALTLALLMWMPLPLPHAII--NLNLGLLFILAVSSLTVYTILGSGWASNSKYALMGALRAVAQTISYEVSLGLILLSM 159          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_PIG (NADH-ubiquinone oxidoreductase chain 1 OS=Sus scrofa GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.513e-24
Identity = 56/148 (37.84%), Postives = 92/148 (62.16%), Query Frame = 3
Query:  180 VLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++ I + V  +  +ER++   +Q R GP    P G+LQ +AD  KL  KE L P+  + S+F I P +A+   L  ++ +P  Y L+  ++N+G+   +A+SS+A   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LS+ L
Sbjct:   10 IIPILLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADALKLFTKEPLRPATSSISMFIIAPILALSLALTMWVPLPMPYPLI--NMNLGVLFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLL 155          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_EPTNI (NADH-ubiquinone oxidoreductase chain 1 OS=Eptesicus nilssoni GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.513e-24
Identity = 57/148 (38.51%), Postives = 91/148 (61.49%), Query Frame = 3
Query:  180 VLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++ I + V  +  LER++   +Q R GP    P G+LQ +AD  KL  KE L P   +  LF I P++A+   L+ ++ +P  + L   ++N+ I   +A+SS+A  G++ SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LSI L
Sbjct:   10 IIPILLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADAIKLFTKEPLQPLTSSHVLFIIAPTLALTLALMMWIPLPMPHPLT--NMNLSILFMLALSSLAVYGIMWSGWASNSKYALIGALRAVAQTISYEVTLAIIILSILL 155          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_XANAC (NADH-quinone oxidoreductase subunit H OS=Xanthomonas axonopodis pv. citri GN=nuoH PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 9.812e-24
Identity = 54/159 (33.96%), Postives = 97/159 (61.01%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +LW +  I +  + + + V   V  ER++   +  R GP Y   +GI QA AD  KLLFKE + P+  + ++F I P + +     ++ V+PF   LVL++ N+G+   +A++S+   G++++G+ SN+KY+FLG +R+AAQ +SYEI +   ++ + +
Sbjct:   25 VLWSVLKILLIAVPVIVTVAFYVVWERKLIGWMHVRHGPMYVG-MGIFQAFADVFKLLFKEIVQPASSHKAMFVIAPLLTLAPAFAAWSVVPFDAKLVLSNANVGLLYLLAMTSLGVYGIILAGWASNSKYAFLGAMRSAAQVVSYEIAMGFALVGVMI 182          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOH_PSEPG7.513e-2432.73NADH-quinone oxidoreductase subunit H OS=Pseudomon... [more]
NUOH_PELCD7.513e-2437.50NADH-quinone oxidoreductase subunit H OS=Pelobacte... [more]
NUOH_HELAH7.513e-2433.14NADH-quinone oxidoreductase subunit H OS=Helicobac... [more]
NUOH_BAUCH7.513e-2437.58NADH-quinone oxidoreductase subunit H OS=Baumannia... [more]
NUOH_BARHE7.513e-2432.10NADH-quinone oxidoreductase subunit H OS=Bartonell... [more]
NU1M_VOMUR7.513e-2438.00NADH-ubiquinone oxidoreductase chain 1 OS=Vombatus... [more]
NU1M_SQUAC7.513e-2436.94NADH-ubiquinone oxidoreductase chain 1 OS=Squalus ... [more]
NU1M_PIG7.513e-2437.84NADH-ubiquinone oxidoreductase chain 1 OS=Sus scro... [more]
NU1M_EPTNI7.513e-2438.51NADH-ubiquinone oxidoreductase chain 1 OS=Eptesicu... [more]
NUOH_XANAC9.812e-2433.96NADH-quinone oxidoreductase subunit H OS=Xanthomon... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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