CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_SODGM (NADH-quinone oxidoreductase subunit H OS=Sodalis glossinidius (strain morsitans) GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.812e-24
Identity = 61/178 (34.27%), Postives = 103/178 (57.87%), Query Frame = 3
Query:   84 TPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            TPEV DI              +L V+  + I ++ +T G  +  + ER +    Q R GP      G LQ LAD  K++FKE+ +P   +  +F++ P IA  ++L+++ ++P S   V+AD NIG+  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:    5 TPEVIDI--------------LLTVVKAVVILLVVVTCGAYMS-FAERRLLGLFQNRYGPNRVGWGGSLQLLADVLKMMFKEDWIPPFADRGIFTLAPVIAFTSLLITFAIVPVSPTWVVADFNIGVLFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_PSEU2 (NADH-quinone oxidoreductase subunit H OS=Pseudomonas syringae pv. syringae (strain B728a) GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.812e-24
Identity = 52/152 (34.21%), Postives = 96/152 (63.16%), Query Frame = 3
Query:  174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            + +LA+ +   ++ ++ER +    Q R GP    P G+ Q  AD  K+ FKE+  P   +  +F++ P +A+ A+L+++ VIP +    +ADLNIG+  + A++ ++   +L +G+ SNNK++ LG LRA+AQ++SYE+ + L ++ I ++V
Sbjct:   20 VVLLAVVVCGALLSFIERRLLGWWQDRYGPNRVGPFGMFQIAADMLKMFFKEDWTPPFADKVIFTLAPVVAMSALLIAFAVIPITPTWGVADLNIGLLFFFAMAGLSVYAVLFAGWSSNNKFALLGSLRASAQTVSYEVFMGLALMGIVVQV 171          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_PSE14 (NADH-quinone oxidoreductase subunit H OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.812e-24
Identity = 52/152 (34.21%), Postives = 96/152 (63.16%), Query Frame = 3
Query:  174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            + +LA+ +   ++ ++ER +    Q R GP    P G+ Q  AD  K+ FKE+  P   +  +F++ P +A+ A+L+++ VIP +    +ADLNIG+  + A++ ++   +L +G+ SNNK++ LG LRA+AQ++SYE+ + L ++ I ++V
Sbjct:   20 VVLLAVVVCGALLSFIERRLLGWWQDRYGPNRVGPFGMFQIAADMLKMFFKEDWTPPFADKVIFTLAPVVAMSALLIAFAVIPITPTWGVADLNIGLLFFFAMAGLSVYAVLFAGWSSNNKFALLGSLRASAQTVSYEVFMGLALMGIVVQV 171          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_ECOUT (NADH-quinone oxidoreductase subunit H OS=Escherichia coli (strain UTI89 / UPEC) GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.812e-24
Identity = 58/157 (36.94%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L VL  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   +  +F++ P IA  ++LL++ ++P S   V+ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LLTVLKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPGWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_ECOL6 (NADH-quinone oxidoreductase subunit H OS=Escherichia coli O6 GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.812e-24
Identity = 58/157 (36.94%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L VL  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   +  +F++ P IA  ++LL++ ++P S   V+ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LLTVLKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPGWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_ECOL5 (NADH-quinone oxidoreductase subunit H OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.812e-24
Identity = 58/157 (36.94%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L VL  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   +  +F++ P IA  ++LL++ ++P S   V+ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LLTVLKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPGWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_ECOK1 (NADH-quinone oxidoreductase subunit H OS=Escherichia coli O1:K1 / APEC GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.812e-24
Identity = 58/157 (36.94%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L VL  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   +  +F++ P IA  ++LL++ ++P S   V+ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LLTVLKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPGWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_ECO81 (NADH-quinone oxidoreductase subunit H OS=Escherichia coli O81 (strain ED1a) GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.812e-24
Identity = 58/157 (36.94%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L VL  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   +  +F++ P IA  ++LL++ ++P S   V+ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LLTVLKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPGWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_ECO45 (NADH-quinone oxidoreductase subunit H OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.812e-24
Identity = 58/157 (36.94%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L VL  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   +  +F++ P IA  ++LL++ ++P S   V+ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LLTVLKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPGWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BARBK (NADH-quinone oxidoreductase subunit H OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.812e-24
Identity = 59/164 (35.98%), Postives = 101/164 (61.59%), Query Frame = 3
Query:  153 WVLAPISIYV----LAITIGVLVIVWL---EREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            W+L P+ I V    L +T+ +++I +L   +R+I A +Q R GP    P G+LQ+ AD  K + KE ++PS  N  +F + P ++    L ++ V+P +    +A +N+G+   +AISS+   G++M G+ SN+KY FLG LR+AAQ +SYE+ +   ++++ L
Sbjct:    8 WLL-PLFIVVGKTLLLLTVLLVLIAYLLYADRKIWAAVQLRRGPNVVGPWGLLQSFADLIKFVVKEPIIPSGANKGVFLLAPFVSATLALSAWAVVPVNEGWEIASINVGLLYILAISSLEVYGVIMGGWASNSKYPFLGALRSAAQMVSYEVSIGFVLVTVIL 170          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOH_SODGM9.812e-2434.27NADH-quinone oxidoreductase subunit H OS=Sodalis g... [more]
NUOH_PSEU29.812e-2434.21NADH-quinone oxidoreductase subunit H OS=Pseudomon... [more]
NUOH_PSE149.812e-2434.21NADH-quinone oxidoreductase subunit H OS=Pseudomon... [more]
NUOH_ECOUT9.812e-2436.94NADH-quinone oxidoreductase subunit H OS=Escherich... [more]
NUOH_ECOL69.812e-2436.94NADH-quinone oxidoreductase subunit H OS=Escherich... [more]
NUOH_ECOL59.812e-2436.94NADH-quinone oxidoreductase subunit H OS=Escherich... [more]
NUOH_ECOK19.812e-2436.94NADH-quinone oxidoreductase subunit H OS=Escherich... [more]
NUOH_ECO819.812e-2436.94NADH-quinone oxidoreductase subunit H OS=Escherich... [more]
NUOH_ECO459.812e-2436.94NADH-quinone oxidoreductase subunit H OS=Escherich... [more]
NUOH_BARBK9.812e-2435.98NADH-quinone oxidoreductase subunit H OS=Bartonell... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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