CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_AERS4 (NADH-quinone oxidoreductase subunit H OS=Aeromonas salmonicida (strain A449) GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.812e-24
Identity = 57/152 (37.50%), Postives = 94/152 (61.84%), Query Frame = 3
Query:  183 LAITIGVL----VIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLR 626
            L + +G++     + ++ER + A  Q R GP    P G+LQ  AD  K+ FKE+ +P   +  +F + P IA  A +L++ V+P +    +ADLN+G+   +AI+ +A   +L +G+ SNNKYS LG LRA+AQ++SYE+ L L ++ I ++
Sbjct:   16 LIVLVGIVGAGAFMSFIERRLLALWQDRYGPNRVGPFGLLQLAADMIKMFFKEDWIPPFADRRIFILAPIIAFTAFILAFAVVPLTPTWGVADLNVGLLYILAIAGLAVYAVLFAGWSSNNKYSLLGSLRASAQTLSYEVFLGLSLMGIVIQ 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_AERHH (NADH-quinone oxidoreductase subunit H OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.812e-24
Identity = 57/152 (37.50%), Postives = 94/152 (61.84%), Query Frame = 3
Query:  183 LAITIGVL----VIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLR 626
            L + +G++     + ++ER + A  Q R GP    P G+LQ  AD  K+ FKE+ +P   +  +F + P IA  A +L++ V+P +    +ADLN+G+   +AI+ +A   +L +G+ SNNKYS LG LRA+AQ++SYE+ L L ++ I ++
Sbjct:   16 LIVLVGIVGAGAFMSFIERRLLALWQDRYGPNRVGPFGLLQLAADMIKMFFKEDWIPPFADRRIFVLAPIIAFTAFILAFAVVPITPTWGVADLNVGLLYILAIAGLAVYAVLFAGWSSNNKYSLLGSLRASAQTLSYEVFLGLSLMGIVIQ 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_GADMO (NADH-ubiquinone oxidoreductase chain 1 OS=Gadus morhua GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.812e-24
Identity = 61/157 (38.85%), Postives = 98/157 (62.42%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            + ++L P+ IY++ + + V  +  +ER++   +Q R GP    P G+LQ +ADG KL  KE + PS  + SLF + P +A+   L  +  +P  + +  ADLN+ I   +A+SS+A   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L L +LS+
Sbjct:    6 VSYILNPL-IYMVPVLLAVAFLTLIERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPIRPSTSSPSLFVL-PVLALTLALTLWAPMPMPFPV--ADLNLSILFVLALSSLAVYSILGSGWASNSKYALVGALRAVAQTISYEVSLGLILLSV 158          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_SHISS (NADH-quinone oxidoreductase subunit H OS=Shigella sonnei (strain Ss046) GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23
Identity = 57/157 (36.31%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L +L  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   +  +F++ P IA  ++LL++ ++P S   V+ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LLTILKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPGWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_SHIFL (NADH-quinone oxidoreductase subunit H OS=Shigella flexneri GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23
Identity = 57/157 (36.31%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L +L  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   +  +F++ P IA  ++LL++ ++P S   V+ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LLTILKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPGWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_SHIF8 (NADH-quinone oxidoreductase subunit H OS=Shigella flexneri serotype 5b (strain 8401) GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23
Identity = 57/157 (36.31%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L +L  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   +  +F++ P IA  ++LL++ ++P S   V+ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LLTILKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPGWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_SHIDS (NADH-quinone oxidoreductase subunit H OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23
Identity = 57/157 (36.31%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L +L  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   +  +F++ P IA  ++LL++ ++P S   V+ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LLTILKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPGWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_SHIBS (NADH-quinone oxidoreductase subunit H OS=Shigella boydii serotype 4 (strain Sb227) GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23
Identity = 57/157 (36.31%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L +L  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   +  +F++ P IA  ++LL++ ++P S   V+ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LLTILKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPGWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_SHIB3 (NADH-quinone oxidoreductase subunit H OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23
Identity = 57/157 (36.31%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L +L  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   +  +F++ P IA  ++LL++ ++P S   V+ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LLTILKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPGWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_SHEON (NADH-quinone oxidoreductase subunit H OS=Shewanella oneidensis GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23
Identity = 57/152 (37.50%), Postives = 94/152 (61.84%), Query Frame = 3
Query:  183 LAITIGVL----VIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLR 626
            L + +G++     + ++ER + A  Q R GP    P G+ Q LAD  K+ FKE+ +P   +  +F + P IA  A +L++ V+P +    +ADLN+G+   +AI+ +A   +L +G+ SNNKYS LG LRA+AQ++SYE+ L L ++ I ++
Sbjct:   16 LIVLVGIVGAGAFMSFIERRLLALWQDRHGPNRVGPFGLFQLLADMIKMFFKEDWIPPFADRRIFILAPIIAFTAFILAFAVVPITPTWGVADLNVGLLYILAIAGLAVYAVLFAGWSSNNKYSLLGSLRASAQTLSYEVFLGLSLMGIVIQ 167          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOH_AERS49.812e-2437.50NADH-quinone oxidoreductase subunit H OS=Aeromonas... [more]
NUOH_AERHH9.812e-2437.50NADH-quinone oxidoreductase subunit H OS=Aeromonas... [more]
NU1M_GADMO9.812e-2438.85NADH-ubiquinone oxidoreductase chain 1 OS=Gadus mo... [more]
NUOH_SHISS1.281e-2336.31NADH-quinone oxidoreductase subunit H OS=Shigella ... [more]
NUOH_SHIFL1.281e-2336.31NADH-quinone oxidoreductase subunit H OS=Shigella ... [more]
NUOH_SHIF81.281e-2336.31NADH-quinone oxidoreductase subunit H OS=Shigella ... [more]
NUOH_SHIDS1.281e-2336.31NADH-quinone oxidoreductase subunit H OS=Shigella ... [more]
NUOH_SHIBS1.281e-2336.31NADH-quinone oxidoreductase subunit H OS=Shigella ... [more]
NUOH_SHIB31.281e-2336.31NADH-quinone oxidoreductase subunit H OS=Shigella ... [more]
NUOH_SHEON1.281e-2337.50NADH-quinone oxidoreductase subunit H OS=Shewanell... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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