CK939407
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_PSESM (NADH-quinone oxidoreductase subunit H OS=Pseudomonas syringae pv. tomato GN=nuoH PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23 Identity = 52/152 (34.21%), Postives = 96/152 (63.16%), Query Frame = 3 Query: 174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629 + +LA+ + ++ ++ER + Q R GP P G+ Q AD K+ FKE+ P + +F++ P +A+ A+L+++ VIP + +ADLNIG+ + A++ ++ +L +G+ SNNK++ LG LRA+AQ++SYE+ + L ++ I ++V Sbjct: 20 VVLLAVVVCGALLSFVERRLLGWWQDRYGPNRVGPFGMFQIAADMLKMFFKEDWTPPFADKVIFTLAPVVAMSALLIAFAVIPITPTWGVADLNIGLLFFFAMAGLSVYAVLFAGWSSNNKFALLGSLRASAQTVSYEVFMGLALMGIVVQV 171
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_HELPY (NADH-quinone oxidoreductase subunit H OS=Helicobacter pylori GN=nuoH PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23 Identity = 58/169 (34.32%), Postives = 95/169 (56.21%), Query Frame = 3 Query: 168 ISIYVLAITIGVLVIV-----------WLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVL---------ADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLS 614 +S Y++ I +L++V ++ER++ A Q+R+GP Y P G+LQ ADG KL KE+++P N +F++ P IA+++ +S IPF N L +D+NIG ++A+ S +++G SNNKYS +G RA Q +S+E+ TL +L+ Sbjct: 1 MSAYIIETLIKILILVAVFSALGGFATYIERKVLAYFQRRLGPCYVGPFGLLQVAADGIKLFTKEDIIPQGANKFIFTLAPIIAMVSAFVSMAPIPFFPNFTLFGYEIKPLISDINIGFLFFLAVGSAGIYAPILAGLASNNKYSLIGSARATIQLLSFEVVSTLTILA 169
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_HELPJ (NADH-quinone oxidoreductase subunit H OS=Helicobacter pylori J99 GN=nuoH PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23 Identity = 58/169 (34.32%), Postives = 95/169 (56.21%), Query Frame = 3 Query: 168 ISIYVLAITIGVLVIV-----------WLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVL---------ADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLS 614 +S Y++ I +L++V ++ER++ A Q+R+GP Y P G+LQ ADG KL KE+++P N +F++ P IA+++ +S IPF N L +D+NIG ++A+ S +++G SNNKYS +G RA Q +S+E+ TL +L+ Sbjct: 1 MSAYIIETLIKILILVAVFSALGGFATYIERKVLAYFQRRLGPCYVGPFGLLQVAADGIKLFTKEDIIPQGANKFIFTLAPIIAMVSAFVSMAPIPFFPNFTLFGYEIKPLISDINIGFLFFLAVGSAGIYAPILAGLASNNKYSLIGSARATIQLLSFEVVSTLTILA 169
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_FRAAA (NADH-quinone oxidoreductase subunit H OS=Frankia alni (strain ACN14a) GN=nuoH PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23 Identity = 61/191 (31.94%), Postives = 111/191 (58.12%), Query Frame = 3 Query: 72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFS---------YNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 +++A P D++ F + + ++ +L ++++ + + + IV+ ER++ A +QQR+GP P G LQ+LADG KL+ KE+L+P+ + +F + P ++ + L++ VIPF L LADL + + +A +S+ GL++SG+ S + Y LG LR+AAQ ISYE+ + L +++ Sbjct: 8 LVLAAPVDPDLSGFG-----DDPFWLI-LLKGVAVFAFLLLMTLFSIVF-ERKVVAKMQQRVGPNRHGPKGWLQSLADGAKLMLKEDLIPALADKPIFILAPILSAVPAFLAFAVIPFGPEVSIFGERTTLQLADLPVSVLYMLAAASLGVYGLILSGWSSGSTYPLLGSLRSAAQIISYEVAMGLSFVAV 191
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_ESCF3 (NADH-quinone oxidoreductase subunit H OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=nuoH PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23 Identity = 57/157 (36.31%), Postives = 96/157 (61.15%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 +L +L + I ++ +T G + ER + Q R GP G LQ +AD K+ FKE+ +P + +F++ P IA ++LL++ ++P S V+ADLNIGI ++ ++ +A +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ + Sbjct: 12 LLTILKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPGWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_ECOSM (NADH-quinone oxidoreductase subunit H OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=nuoH PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23 Identity = 57/157 (36.31%), Postives = 96/157 (61.15%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 +L +L + I ++ +T G + ER + Q R GP G LQ +AD K+ FKE+ +P + +F++ P IA ++LL++ ++P S V+ADLNIGI ++ ++ +A +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ + Sbjct: 12 LLTILKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPGWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_ECOSE (NADH-quinone oxidoreductase subunit H OS=Escherichia coli (strain SE11) GN=nuoH PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23 Identity = 57/157 (36.31%), Postives = 96/157 (61.15%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 +L +L + I ++ +T G + ER + Q R GP G LQ +AD K+ FKE+ +P + +F++ P IA ++LL++ ++P S V+ADLNIGI ++ ++ +A +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ + Sbjct: 12 LLTILKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPGWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_ECOLU (NADH-quinone oxidoreductase subunit H OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=nuoH PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23 Identity = 57/157 (36.31%), Postives = 96/157 (61.15%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 +L +L + I ++ +T G + ER + Q R GP G LQ +AD K+ FKE+ +P + +F++ P IA ++LL++ ++P S V+ADLNIGI ++ ++ +A +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ + Sbjct: 12 LLTILKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPGWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_ECOLI (NADH-quinone oxidoreductase subunit H OS=Escherichia coli (strain K12) GN=nuoH PE=1 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23 Identity = 57/157 (36.31%), Postives = 96/157 (61.15%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 +L +L + I ++ +T G + ER + Q R GP G LQ +AD K+ FKE+ +P + +F++ P IA ++LL++ ++P S V+ADLNIGI ++ ++ +A +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ + Sbjct: 12 LLTILKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPGWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_ECOLC (NADH-quinone oxidoreductase subunit H OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=nuoH PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23 Identity = 57/157 (36.31%), Postives = 96/157 (61.15%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 +L +L + I ++ +T G + ER + Q R GP G LQ +AD K+ FKE+ +P + +F++ P IA ++LL++ ++P S V+ADLNIGI ++ ++ +A +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ + Sbjct: 12 LLTILKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPGWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167 The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bpback to top |