CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_PSESM (NADH-quinone oxidoreductase subunit H OS=Pseudomonas syringae pv. tomato GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23
Identity = 52/152 (34.21%), Postives = 96/152 (63.16%), Query Frame = 3
Query:  174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            + +LA+ +   ++ ++ER +    Q R GP    P G+ Q  AD  K+ FKE+  P   +  +F++ P +A+ A+L+++ VIP +    +ADLNIG+  + A++ ++   +L +G+ SNNK++ LG LRA+AQ++SYE+ + L ++ I ++V
Sbjct:   20 VVLLAVVVCGALLSFVERRLLGWWQDRYGPNRVGPFGMFQIAADMLKMFFKEDWTPPFADKVIFTLAPVVAMSALLIAFAVIPITPTWGVADLNIGLLFFFAMAGLSVYAVLFAGWSSNNKFALLGSLRASAQTVSYEVFMGLALMGIVVQV 171          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_HELPY (NADH-quinone oxidoreductase subunit H OS=Helicobacter pylori GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23
Identity = 58/169 (34.32%), Postives = 95/169 (56.21%), Query Frame = 3
Query:  168 ISIYVLAITIGVLVIV-----------WLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVL---------ADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLS 614
            +S Y++   I +L++V           ++ER++ A  Q+R+GP Y  P G+LQ  ADG KL  KE+++P   N  +F++ P IA+++  +S   IPF  N  L         +D+NIG   ++A+ S      +++G  SNNKYS +G  RA  Q +S+E+  TL +L+
Sbjct:    1 MSAYIIETLIKILILVAVFSALGGFATYIERKVLAYFQRRLGPCYVGPFGLLQVAADGIKLFTKEDIIPQGANKFIFTLAPIIAMVSAFVSMAPIPFFPNFTLFGYEIKPLISDINIGFLFFLAVGSAGIYAPILAGLASNNKYSLIGSARATIQLLSFEVVSTLTILA 169          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_HELPJ (NADH-quinone oxidoreductase subunit H OS=Helicobacter pylori J99 GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23
Identity = 58/169 (34.32%), Postives = 95/169 (56.21%), Query Frame = 3
Query:  168 ISIYVLAITIGVLVIV-----------WLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVL---------ADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLS 614
            +S Y++   I +L++V           ++ER++ A  Q+R+GP Y  P G+LQ  ADG KL  KE+++P   N  +F++ P IA+++  +S   IPF  N  L         +D+NIG   ++A+ S      +++G  SNNKYS +G  RA  Q +S+E+  TL +L+
Sbjct:    1 MSAYIIETLIKILILVAVFSALGGFATYIERKVLAYFQRRLGPCYVGPFGLLQVAADGIKLFTKEDIIPQGANKFIFTLAPIIAMVSAFVSMAPIPFFPNFTLFGYEIKPLISDINIGFLFFLAVGSAGIYAPILAGLASNNKYSLIGSARATIQLLSFEVVSTLTILA 169          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_FRAAA (NADH-quinone oxidoreductase subunit H OS=Frankia alni (strain ACN14a) GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23
Identity = 61/191 (31.94%), Postives = 111/191 (58.12%), Query Frame = 3
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFS---------YNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +++A P   D++ F       + + ++ +L  ++++   + + +  IV+ ER++ A +QQR+GP    P G LQ+LADG KL+ KE+L+P+  +  +F + P ++ +   L++ VIPF            L LADL + +   +A +S+   GL++SG+ S + Y  LG LR+AAQ ISYE+ + L  +++
Sbjct:    8 LVLAAPVDPDLSGFG-----DDPFWLI-LLKGVAVFAFLLLMTLFSIVF-ERKVVAKMQQRVGPNRHGPKGWLQSLADGAKLMLKEDLIPALADKPIFILAPILSAVPAFLAFAVIPFGPEVSIFGERTTLQLADLPVSVLYMLAAASLGVYGLILSGWSSGSTYPLLGSLRSAAQIISYEVAMGLSFVAV 191          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_ESCF3 (NADH-quinone oxidoreductase subunit H OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23
Identity = 57/157 (36.31%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L +L  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   +  +F++ P IA  ++LL++ ++P S   V+ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LLTILKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPGWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_ECOSM (NADH-quinone oxidoreductase subunit H OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23
Identity = 57/157 (36.31%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L +L  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   +  +F++ P IA  ++LL++ ++P S   V+ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LLTILKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPGWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_ECOSE (NADH-quinone oxidoreductase subunit H OS=Escherichia coli (strain SE11) GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23
Identity = 57/157 (36.31%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L +L  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   +  +F++ P IA  ++LL++ ++P S   V+ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LLTILKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPGWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_ECOLU (NADH-quinone oxidoreductase subunit H OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23
Identity = 57/157 (36.31%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L +L  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   +  +F++ P IA  ++LL++ ++P S   V+ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LLTILKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPGWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_ECOLI (NADH-quinone oxidoreductase subunit H OS=Escherichia coli (strain K12) GN=nuoH PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23
Identity = 57/157 (36.31%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L +L  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   +  +F++ P IA  ++LL++ ++P S   V+ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LLTILKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPGWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_ECOLC (NADH-quinone oxidoreductase subunit H OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23
Identity = 57/157 (36.31%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L +L  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   +  +F++ P IA  ++LL++ ++P S   V+ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LLTILKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPGWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOH_PSESM1.281e-2334.21NADH-quinone oxidoreductase subunit H OS=Pseudomon... [more]
NUOH_HELPY1.281e-2334.32NADH-quinone oxidoreductase subunit H OS=Helicobac... [more]
NUOH_HELPJ1.281e-2334.32NADH-quinone oxidoreductase subunit H OS=Helicobac... [more]
NUOH_FRAAA1.281e-2331.94NADH-quinone oxidoreductase subunit H OS=Frankia a... [more]
NUOH_ESCF31.281e-2336.31NADH-quinone oxidoreductase subunit H OS=Escherich... [more]
NUOH_ECOSM1.281e-2336.31NADH-quinone oxidoreductase subunit H OS=Escherich... [more]
NUOH_ECOSE1.281e-2336.31NADH-quinone oxidoreductase subunit H OS=Escherich... [more]
NUOH_ECOLU1.281e-2336.31NADH-quinone oxidoreductase subunit H OS=Escherich... [more]
NUOH_ECOLI1.281e-2336.31NADH-quinone oxidoreductase subunit H OS=Escherich... [more]
NUOH_ECOLC1.281e-2336.31NADH-quinone oxidoreductase subunit H OS=Escherich... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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