CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BURCJ (NADH-quinone oxidoreductase subunit H OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23
Identity = 56/156 (35.90%), Postives = 93/156 (59.62%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +W +  I +  + I + V  ++  ER++   +  R+GP    P G+LQ +AD  KLL KE + P+  +  L+ I P + V+     + VIPF    VLA++N G+   +AISSI    ++++G+ SN+KY+FLG +RAAAQ +SYEI +   ++ +
Sbjct:   22 VWAVVRILVVSVVILLCVAYLILWERKLIGWMHVRLGPNRVGPGGLLQPIADVLKLLLKEVIQPTAASRWLYLIAPIMTVVPAFAVWAVIPFQAEAVLANVNAGLLYAMAISSIGVYAVILAGWASNSKYAFLGAMRAAAQMVSYEISMGFALVLV 177          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BDEBA (NADH-quinone oxidoreductase subunit H OS=Bdellovibrio bacteriovorus GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23
Identity = 61/167 (36.53%), Postives = 91/167 (54.49%), Query Frame = 3
Query:  174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLA-------------------DLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +  L +   V ++VWLER  SA IQ R+GP    PLG++Q LAD  K L KEN +P      L+   P  A+I   +++  IP S  + +                    D+ +GI   + +SS+A   LLM+G+GS NKY+ +G LRA+AQ+ISYE+ L L ++ +
Sbjct:   19 VIFLMMVQAVPILVWLERRGSAFIQDRLGPNRVGPLGLVQLLADAVKFLNKENFMPQTAKPFLYYAAPIFALIPGAVAFSAIPLSSPIQVGTFEMFGSTWGPYTFLVQGYDIGVGIVFILGVSSLAAYTLLMAGWGSGNKYTLMGALRASAQTISYELALGLSIVGV 185          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH2_GEOSL (NADH-quinone oxidoreductase subunit H 2 OS=Geobacter sulfurreducens GN=nuoH2 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23
Identity = 60/155 (38.71%), Postives = 94/155 (60.65%), Query Frame = 3
Query:  174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPF---------SYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 611
            I+ + +T+    +V+ ER + A IQ R GP    P G+LQ LAD  KLL KE+  P+  +  LF + P++A +  +L++ VIPF            L +ADLN+G+  ++A+SSIA  G+ + G+ SN+KY+ LG +R  AQ ISYE+ + L ++
Sbjct:   18 IFFVVLTLAAY-LVFAERRLLAWIQDRKGPNRVGPFGLLQPLADLIKLLTKEDFRPAGADKWLFYLAPAMAAVPAILTFAVIPFGAPVTILGREIPLQVADLNVGLLFFLALSSIAVYGVALGGWASNSKYALLGSIRGLAQLISYELSMGLSLV 171          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_NOTTY (NADH-ubiquinone oxidoreductase chain 1 OS=Notoryctes typhlops GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23
Identity = 56/150 (37.33%), Postives = 91/150 (60.67%), Query Frame = 3
Query:  174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +Y++ I + V  +  +ER++   +Q R GP    P G+LQ  AD  KL  KE L P   +  ++++ P++A+   L  +  +P  Y+LV  DLN+G+   +A+SS++   +L SG+ SN+KY   G LRA AQ+ISYE+ L + +LSI +
Sbjct:    8 LYIIPILLAVAFLTLIERKVLGYMQFRKGPNVVGPYGLLQPFADAVKLFTKEPLHPLSSSVLMYTLAPTLALTLALTIWTPLPMPYSLV--DLNLGLLFILALSSLSVYSILWSGWASNSKYPLAGALRAVAQTISYEVTLAIILLSIMM 155          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_CANLU (NADH-ubiquinone oxidoreductase chain 1 OS=Canis lupus GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23
Identity = 55/148 (37.16%), Postives = 91/148 (61.49%), Query Frame = 3
Query:  180 VLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++ I + V  +  +ER++   +Q R GP    P G+LQ +AD  KL  KE L P   + S+F + P +A+   L  ++ +P  Y L+  ++N+G+   +A+SS+A   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LS+ L
Sbjct:   10 IIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPLRPLTSSMSMFILAPILALSLALTMWIPLPMPYPLI--NMNLGVLFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLL 155          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_CANFA (NADH-ubiquinone oxidoreductase chain 1 OS=Canis familiaris GN=MT-ND1 PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23
Identity = 55/148 (37.16%), Postives = 91/148 (61.49%), Query Frame = 3
Query:  180 VLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++ I + V  +  +ER++   +Q R GP    P G+LQ +AD  KL  KE L P   + S+F + P +A+   L  ++ +P  Y L+  ++N+G+   +A+SS+A   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LS+ L
Sbjct:   10 IIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPLRPLTSSMSMFILAPILALSLALTMWIPLPMPYPLI--NMNLGVLFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLL 155          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_YERPY (NADH-quinone oxidoreductase subunit H OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.674e-23
Identity = 58/161 (36.02%), Postives = 98/161 (60.87%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            ++ VL  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   + ++F++ P IA  ++LLS+ ++P S    +ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +  +V
Sbjct:   12 LISVLKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPRFSDRAIFTLAPVIAFTSLLLSFAIVPVSPTWAVADLNIGILFFLMMAGLAVYAVLFAGWASNNKYSLLGAMRASAQTLSYEVFLGLSLMGVVAQV 171          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_ENT38 (NADH-quinone oxidoreductase subunit H OS=Enterobacter sp. (strain 638) GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.674e-23
Identity = 57/157 (36.31%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L +L  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   +  +F++ P IA  ++LL++ ++P S   V+ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LLSILKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPTWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_CITK8 (NADH-quinone oxidoreductase subunit H OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.674e-23
Identity = 57/157 (36.31%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L +L  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   +  +F++ P IA  ++LL++ ++P S   V+ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LLSILKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPTWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BART1 (NADH-quinone oxidoreductase subunit H OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.674e-23
Identity = 53/158 (33.54%), Postives = 96/158 (60.76%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            L ++    + ++ + + V  +++ +R+I A +Q R GP    P G+LQ+ AD  K + KE ++P+  N  +F + P ++    L ++ VIP S    +A +N+G+   +AISS+   G++M G+ SN+KY FLG LR+AAQ +SYE+ +   ++++ L
Sbjct:   13 LIIVGKTLLLLVVLLVLVAYLLYADRKIWAAVQLRRGPNVVGPWGLLQSFADLIKFVVKEPIIPAGANKGVFLLAPFVSATLALSTWAVIPVSEGWEVAKINVGLLYILAISSLEVYGVIMGGWASNSKYPFLGALRSAAQMVSYEVSIGFVLVTVIL 170          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOH_BURCJ1.281e-2335.90NADH-quinone oxidoreductase subunit H OS=Burkholde... [more]
NUOH_BDEBA1.281e-2336.53NADH-quinone oxidoreductase subunit H OS=Bdellovib... [more]
NUOH2_GEOSL1.281e-2338.71NADH-quinone oxidoreductase subunit H 2 OS=Geobact... [more]
NU1M_NOTTY1.281e-2337.33NADH-ubiquinone oxidoreductase chain 1 OS=Notoryct... [more]
NU1M_CANLU1.281e-2337.16NADH-ubiquinone oxidoreductase chain 1 OS=Canis lu... [more]
NU1M_CANFA1.281e-2337.16NADH-ubiquinone oxidoreductase chain 1 OS=Canis fa... [more]
NUOH_YERPY1.674e-2336.02NADH-quinone oxidoreductase subunit H OS=Yersinia ... [more]
NUOH_ENT381.674e-2336.31NADH-quinone oxidoreductase subunit H OS=Enterobac... [more]
NUOH_CITK81.674e-2336.31NADH-quinone oxidoreductase subunit H OS=Citrobact... [more]
NUOH_BART11.674e-2333.54NADH-quinone oxidoreductase subunit H OS=Bartonell... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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