CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BACTN (NADH-quinone oxidoreductase subunit H OS=Bacteroides thetaiotaomicron GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.674e-23
Identity = 52/167 (31.14%), Postives = 100/167 (59.88%), Query Frame = 3
Query:  120 LESLQEVYGILWVLAPISIYVLAI-TIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            L  + E + I      + + ++A+  I  +V++++ER++    Q R+GP      G +Q + D  K+L KE   P   +  L+++ P + +IA  L++  IPF+    + + N+G+F  +A SSI  +G+L++G+GSNNK+S +G +R+ AQ ISYE+ + + ++++
Sbjct:   16 LSVMPEGWAIFIECIAVGVCIVALYAILAIVLIYMERKVCGFFQCRLGPNRVGKWGSIQVICDVLKMLTKEIFTPKDADRFLYNLAPFMVIIASFLTFACIPFNKGAEILNFNVGVFFLLAASSIGVVGILLAGWGSNNKFSLIGAMRSGAQIISYELSVGMSIMTM 182          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_DINSE (NADH-ubiquinone oxidoreductase chain 1 OS=Dinodon semicarinatus GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.674e-23
Identity = 56/150 (37.33%), Postives = 93/150 (62.00%), Query Frame = 3
Query:  174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +Y+L+I I V  +  LER++   +Q R GP    P+G+LQ +ADG KL+ KE   P+  +  LF++ P +A+I  L S+  +P      L ++N+G+   +A+S +    +L SG+ SN+KY  +G +RA AQ ISYE+ L L ++S+++
Sbjct:   14 LYILSILIAVAFLTLLERKLLGYMQHRKGPNLVGPMGLLQPIADGLKLITKEATKPTMSSPILFTLSPIMALILALTSWAPMPMP--TPLTNMNLGLLFIMAMSGMFTYAILWSGWSSNSKYPLMGAMRAVAQIISYEVTLGLIIISMAI 161          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_CYCDI (NADH-ubiquinone oxidoreductase chain 1 OS=Cyclopes didactylus GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.674e-23
Identity = 60/155 (38.71%), Postives = 94/155 (60.65%), Query Frame = 3
Query:  159 LAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            L  IS  ++ I + V  +  +ER+I   +Q R GP    P G+LQ +AD  KL  KE L P   +  LF+I P++A+   L  ++ +P  + L  A+LN+G+   +A+SS+A   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +L  +L
Sbjct:    3 LTNISCLIIPILLAVAFLTLVERKILGYMQLRKGPNIVGPYGLLQPIADAIKLFTKEPLRPLTSSKLLFTIAPTLALSLALTLWIPLPMPHPL--ANLNLGMLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLHSNL 155          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_NITEU (NADH-quinone oxidoreductase subunit H OS=Nitrosomonas europaea GN=nuoH PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.186e-23
Identity = 64/172 (37.21%), Postives = 106/172 (61.63%), Query Frame = 3
Query:  144 GILWVLAPISIYVLAITIGVLVIV----WLEREISAGIQQRIGPEYASPLGIL------QALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPL---TLCVLSIS 620
            G L++L    + +LAI I +L+ V    + ER+I A +Q R+GP   +   I       Q +AD  K + KE ++P+  N  LF + P +A+   L ++ V+PFS  LVLAD+N G+   +A++S+   G++++G+ SN+KY+FLG +R+AAQ +SYE+ +    +CVL +S
Sbjct:   18 GPLFLLIKNLLLILAIVIPLLLAVAYLTFAERKIIAYMQVRVGPNRVTFFDIPWLRGWGQPIADAVKAIMKEIIIPTGANKFLFLLAPVLAIGPALAAWAVVPFSPELVLADINAGLLYILAMTSLGVYGVIIAGWASNSKYAFLGAMRSAAQVVSYELAMGFALVCVLMMS 189          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_FRASC (NADH-quinone oxidoreductase subunit H OS=Frankia sp. (strain CcI3) GN=nuoH PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.186e-23
Identity = 58/165 (35.15%), Postives = 98/165 (59.39%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFS---------YNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            L +L  ++++   + + +  IV+ ER++ A +QQR+GP    P G LQ+LADG KL+ KE+L+P   +  +F + P ++ +   L++ VIPF            L LADL + +   +A +S+   GL++SG+ S + Y  LG LR+AAQ ISYE+ + L  +++
Sbjct:   28 LILLKAVAVFAFLLLMTLFAIVF-ERKVVAKMQQRVGPNRHGPRGWLQSLADGAKLMLKEDLIPVLADKPIFILAPIVSAVPAFLAFAVIPFGPEVSIFGERTTLQLADLPVSVLYLLAAASLGVYGLILSGWSSGSTYPLLGSLRSAAQIISYEVAMGLAFVAV 191          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_FLAJ1 (NADH-quinone oxidoreductase subunit H OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=nuoH PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.186e-23
Identity = 59/160 (36.88%), Postives = 94/160 (58.75%), Query Frame = 3
Query:  168 ISIYVLAIT-IGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVL---------ADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            + + V A+T I  +   W ER+++A +Q R+GP  A   G+LQ LADG KL  KE   P+  N  LF +GP+IA+   L++  VIP+   L L          D+NI +     + S+   G+++ G+ SNNK+S +G +RAA+Q +SYEI + L ++++
Sbjct:   12 VIVVVFAVTMIMAMYSTWAERKVAAFLQDRVGPNRAGWGGLLQPLADGMKLFSKEEFFPNTPNRFLFVVGPAIAMSTALMTSAVIPWGDRLHLFGKDIILQATDVNIALLYIFGVLSVGVYGIMIGGWASNNKFSLMGAVRAASQMVSYEIAMGLSMIAL 171          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BARQU (NADH-quinone oxidoreductase subunit H OS=Bartonella quintana GN=nuoH PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.186e-23
Identity = 52/159 (32.70%), Postives = 97/159 (61.01%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +L ++    + ++ + + V  +++ +R+I A +Q R GP    P G+LQ+ AD  K + KE ++P+  N  +F + P ++    L ++ VIP +    +A +N+G+   +AISS+   G++M G+ SN+KY FLG LR+AAQ +SYE+ +   ++++ L
Sbjct:   12 LLIIVGKTLLLLVVLLVLVAYLLYADRKIWAAVQLRRGPNVVGPWGLLQSFADLIKFVVKEPIIPAGANKGVFLLAPFVSATLALSTWAVIPVNEGWEVAKINVGLLYILAISSLEVYGVIMGGWASNSKYPFLGALRSAAQMVSYEVSIGFVLVTVIL 170          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BACFR (NADH-quinone oxidoreductase subunit H OS=Bacteroides fragilis GN=nuoH PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.186e-23
Identity = 52/160 (32.50%), Postives = 96/160 (60.00%), Query Frame = 3
Query:  168 ISIYVLAITIGVLVI----------VWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +++++  + IGV ++          +++ER++    Q R+GP      G +Q L D  K+L KE +     +  L+++ P + +IA  L++  +P S  L + D N+G+F  +A SSI  +G+L++G+GSNNK+S +G +R+ AQ ISYE+ + L +L++
Sbjct:   23 LAVFIECVVIGVCIVALYAILAILLIYMERKVCGFFQCRLGPNRVGKWGSIQVLCDVLKMLTKEIIELKHSDKFLYNLAPFMVIIASFLTFSCLPISKGLEVLDFNVGVFFLLAASSIGVVGILLAGWGSNNKFSLIGAMRSGAQIISYELSVGLSILTM 182          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_BACFN (NADH-quinone oxidoreductase subunit H OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=nuoH PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.186e-23
Identity = 52/160 (32.50%), Postives = 96/160 (60.00%), Query Frame = 3
Query:  168 ISIYVLAITIGVLVI----------VWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +++++  + IGV ++          +++ER++    Q R+GP      G +Q L D  K+L KE +     +  L+++ P + +IA  L++  +P S  L + D N+G+F  +A SSI  +G+L++G+GSNNK+S +G +R+ AQ ISYE+ + L +L++
Sbjct:   23 LAVFIECVVIGVCIVALYAILAILLIYMERKVCGFFQCRLGPNRVGKWGSIQVLCDVLKMLTKEIIELKHSDKFLYNLAPFMVIIASFLTFSCLPISKGLEVLDFNVGVFFLLAASSIGVVGILLAGWGSNNKFSLIGAMRSGAQIISYELSVGLSILTM 182          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_TADIN (NADH-ubiquinone oxidoreductase chain 1 OS=Tadarida insignis GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.186e-23
Identity = 56/148 (37.84%), Postives = 92/148 (62.16%), Query Frame = 3
Query:  180 VLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++ I + V  +  +ER+I   +Q R GP    P G+LQ +AD  KL  KE L P   ++++F + P +A+   L  ++ +P  Y L+  ++N+GI   +A+SS+A   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LS+ L
Sbjct:   10 IIPILLAVAFLTLVERKILGYMQLRKGPNIVGPHGLLQPIADAIKLFTKEPLQPLTSSTTMFIMAPILALTLALTMWIPLPMPYPLI--NMNLGILFMLAMSSLAVYAILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLL 155          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOH_BACTN1.674e-2331.14NADH-quinone oxidoreductase subunit H OS=Bacteroid... [more]
NU1M_DINSE1.674e-2337.33NADH-ubiquinone oxidoreductase chain 1 OS=Dinodon ... [more]
NU1M_CYCDI1.674e-2338.71NADH-ubiquinone oxidoreductase chain 1 OS=Cyclopes... [more]
NUOH_NITEU2.186e-2337.21NADH-quinone oxidoreductase subunit H OS=Nitrosomo... [more]
NUOH_FRASC2.186e-2335.15NADH-quinone oxidoreductase subunit H OS=Frankia s... [more]
NUOH_FLAJ12.186e-2336.88NADH-quinone oxidoreductase subunit H OS=Flavobact... [more]
NUOH_BARQU2.186e-2332.70NADH-quinone oxidoreductase subunit H OS=Bartonell... [more]
NUOH_BACFR2.186e-2332.50NADH-quinone oxidoreductase subunit H OS=Bacteroid... [more]
NUOH_BACFN2.186e-2332.50NADH-quinone oxidoreductase subunit H OS=Bacteroid... [more]
NU1M_TADIN2.186e-2337.84NADH-ubiquinone oxidoreductase chain 1 OS=Tadarida... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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