CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_RANCA (NADH-ubiquinone oxidoreductase chain 1 OS=Rana catesbeiana GN=MT-ND1 PE=3 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 2.186e-23
Identity = 56/146 (38.36%), Postives = 88/146 (60.27%), Query Frame = 3
Query:  174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 611
            +Y+  I + V  +  +ER+I   +Q R GP    P G+LQ +ADG KL  KE + PS  +  LF + P++A+   ++ +   PF   +  ++LN+ I   +AISS+    +L SG+ SN+KY+ +G LRA AQ+ISYE+ L L +L
Sbjct:   12 LYIAPILLAVAFLTLIERKILGYMQHRKGPNVVGPFGLLQPIADGVKLFIKEPIRPSTSSQLLFILAPTLALALAMIMW--TPFPLPIPYSNLNLSILFILAISSLTVYTILGSGWASNSKYALIGALRAVAQTISYEVTLALIIL 155          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_PHOVI (NADH-ubiquinone oxidoreductase chain 1 OS=Phoca vitulina GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.186e-23
Identity = 54/148 (36.49%), Postives = 92/148 (62.16%), Query Frame = 3
Query:  180 VLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++ I + V  +  +ER++   +Q R GP    P G+LQ +AD  KL  KE L P   ++++F + P +A+   L  ++ +P  Y L+  ++N+G+   +A+SS+A   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LS+ L
Sbjct:   10 IIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPLRPLTSSTTMFIMAPILALALALTMWVPLPMPYPLI--NMNLGVLFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLL 155          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_LEMCA (NADH-ubiquinone oxidoreductase chain 1 OS=Lemur catta GN=MT-ND1 PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 2.186e-23
Identity = 56/150 (37.33%), Postives = 93/150 (62.00%), Query Frame = 3
Query:  174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            + ++ I + +  +   ER+I   +Q R GP    P G++Q  AD  KL  KE L P   +SSL++I P++A+   L++++ +P  Y L+  ++N+G+   +A SS+A   +L SG+ SN+KY+ +G LRA AQ+ISYE  L + +LS+ L
Sbjct:    8 LLIIPILLAMAFLTLAERKILGYMQLRKGPNVVGPHGMIQPFADAMKLFIKEPLRPLTSSSSLYTIAPTLALTIALVTWIPLPLPYPLI--NMNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEFTLAIILLSLLL 155          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_HIPDI (NADH-ubiquinone oxidoreductase chain 1 OS=Hipposideros diadema GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.186e-23
Identity = 56/150 (37.33%), Postives = 91/150 (60.67%), Query Frame = 3
Query:  174 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            + ++ I + V  +  +ER++   +Q R GP    P G+LQ +AD  KL  KE L P   + S+F I P +A+   L  +  +P  Y L+  ++N+G+   +A+SS+A   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LS+ L
Sbjct:    8 LMIVPILLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADAIKLFTKEPLRPLTSSISMFIIAPILALALALTMWTPLPMPYPLI--NMNLGVLFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLL 155          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_HALGR (NADH-ubiquinone oxidoreductase chain 1 OS=Halichoerus grypus GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.186e-23
Identity = 54/148 (36.49%), Postives = 92/148 (62.16%), Query Frame = 3
Query:  180 VLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++ I + V  +  +ER++   +Q R GP    P G+LQ +AD  KL  KE L P   ++++F + P +A+   L  ++ +P  Y L+  ++N+G+   +A+SS+A   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LS+ L
Sbjct:   10 IIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPLRPLTSSTTMFIMAPILALTLALTMWVPLPMPYPLI--NMNLGVLFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLL 155          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_DIDMA (NADH-ubiquinone oxidoreductase chain 1 OS=Didelphis marsupialis virginiana GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.186e-23
Identity = 58/155 (37.42%), Postives = 92/155 (59.35%), Query Frame = 3
Query:  159 LAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            L  + +Y++ I + V  +  +ER++   +Q R GP    P GILQ  AD  KL  KE L P   + S+F+I P++A+      +  +P    L+  DLN+G+   +A+S ++   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LSI L
Sbjct:    3 LINLLMYIIPILLAVAFLTLVERKVLGYMQFRKGPNVIGPYGILQPFADALKLFIKEPLRPMTSSISMFTIAPTLALTLAFTIWTPLPMPNALL--DLNLGLLFILALSGLSVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIML 155          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_BALPH (NADH-ubiquinone oxidoreductase chain 1 OS=Balaenoptera physalus GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.186e-23
Identity = 57/148 (38.51%), Postives = 91/148 (61.49%), Query Frame = 3
Query:  180 VLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +L I + V  +  +ER+I   +Q R GP    P G+LQ  AD  KL  KE L P+  ++++F I P +A+   L  +  +P  Y L+  ++N+G+   +A+SS+A   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LS+ L
Sbjct:   10 ILPILLAVAFLTLVERKILGYMQFRKGPNIVGPHGLLQPFADAIKLFTKEPLRPATSSTTMFIIAPVLALTLALTMWSPLPMPYPLI--NMNLGVLFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLL 155          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1M_BALMU (NADH-ubiquinone oxidoreductase chain 1 OS=Balaenoptera musculus GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.186e-23
Identity = 57/148 (38.51%), Postives = 91/148 (61.49%), Query Frame = 3
Query:  180 VLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +L I + V  +  +ER+I   +Q R GP    P G+LQ  AD  KL  KE L P+  ++++F I P +A+   L  +  +P  Y L+  ++N+G+   +A+SS+A   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LS+ L
Sbjct:   10 ILPILLAVAFLTLVERKILGYMQFRKGPNIVGPHGLLQPFADAIKLFTKEPLRPATSSTTMFIIAPVLALALALTMWSPLPMPYPLI--NMNLGVLFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLL 155          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: FPOH_METMA (F(420)H(2) oxidoreductase subunit H OS=Methanosarcina mazei GN=fpoH PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.186e-23
Identity = 57/166 (34.34%), Postives = 93/166 (56.02%), Query Frame = 3
Query:  153 WVLAPISIYVL-AITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFS--------YNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            W+   + + ++ AI +G +  VW+ER++SA IQ R GP      G+LQ +AD  KL  KE++ P   +  L+   P   + ++ L  + IP          Y L + +++I I    A+S+I   G+ M+ YGSNNKYS LG  R  A+ I YE+PL + ++S+++
Sbjct:   18 WIRGTVGLVLVGAIFLGGMAAVWIERKLSADIQLRYGPSRVGKFGLLQLVADAIKLFTKEDVRPGNADRFLYDNAPVFMLTSLFLMLVAIPVGAVFIDGNLYPLAVTEMDISILFIEAVSAINIFGIFMAAYGSNNKYSLLGAFRNFARMIGYEVPLGIAIVSVAV 183          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_YERPS (NADH-quinone oxidoreductase subunit H OS=Yersinia pseudotuberculosis GN=nuoH PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.855e-23
Identity = 57/157 (36.31%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            ++ VL  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   + ++F++ P IA  ++LLS+ ++P S    +ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LISVLKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPRFSDRAIFTLAPVIAFTSLLLSFAIVPVSPTWAVADLNIGILFFLMMAGLAVYAVLFAGWASNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1M_RANCA2.186e-2338.36NADH-ubiquinone oxidoreductase chain 1 OS=Rana cat... [more]
NU1M_PHOVI2.186e-2336.49NADH-ubiquinone oxidoreductase chain 1 OS=Phoca vi... [more]
NU1M_LEMCA2.186e-2337.33NADH-ubiquinone oxidoreductase chain 1 OS=Lemur ca... [more]
NU1M_HIPDI2.186e-2337.33NADH-ubiquinone oxidoreductase chain 1 OS=Hipposid... [more]
NU1M_HALGR2.186e-2336.49NADH-ubiquinone oxidoreductase chain 1 OS=Halichoe... [more]
NU1M_DIDMA2.186e-2337.42NADH-ubiquinone oxidoreductase chain 1 OS=Didelphi... [more]
NU1M_BALPH2.186e-2338.51NADH-ubiquinone oxidoreductase chain 1 OS=Balaenop... [more]
NU1M_BALMU2.186e-2338.51NADH-ubiquinone oxidoreductase chain 1 OS=Balaenop... [more]
FPOH_METMA2.186e-2334.34F(420)H(2) oxidoreductase subunit H OS=Methanosarc... [more]
NUOH_YERPS2.855e-2336.31NADH-quinone oxidoreductase subunit H OS=Yersinia ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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