CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_YERPP (NADH-quinone oxidoreductase subunit H OS=Yersinia pestis (strain Pestoides F) GN=nuoH PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.855e-23
Identity = 57/157 (36.31%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            ++ VL  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   + ++F++ P IA  ++LLS+ ++P S    +ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LISVLKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPRFSDRAIFTLAPVIAFTSLLLSFAIVPVSPTWAVADLNIGILFFLMMAGLAVYAVLFAGWASNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_YERPN (NADH-quinone oxidoreductase subunit H OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=nuoH PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.855e-23
Identity = 57/157 (36.31%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            ++ VL  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   + ++F++ P IA  ++LLS+ ++P S    +ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LISVLKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPRFSDRAIFTLAPVIAFTSLLLSFAIVPVSPTWAVADLNIGILFFLMMAGLAVYAVLFAGWASNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_YERPG (NADH-quinone oxidoreductase subunit H OS=Yersinia pestis bv. Antiqua (strain Angola) GN=nuoH PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.855e-23
Identity = 57/157 (36.31%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            ++ VL  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   + ++F++ P IA  ++LLS+ ++P S    +ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LISVLKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPRFSDRAIFTLAPVIAFTSLLLSFAIVPVSPTWAVADLNIGILFFLMMAGLAVYAVLFAGWASNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_YERPE (NADH-quinone oxidoreductase subunit H OS=Yersinia pestis GN=nuoH PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.855e-23
Identity = 57/157 (36.31%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            ++ VL  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   + ++F++ P IA  ++LLS+ ++P S    +ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LISVLKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPRFSDRAIFTLAPVIAFTSLLLSFAIVPVSPTWAVADLNIGILFFLMMAGLAVYAVLFAGWASNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_YERPB (NADH-quinone oxidoreductase subunit H OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=nuoH PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.855e-23
Identity = 57/157 (36.31%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            ++ VL  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   + ++F++ P IA  ++LLS+ ++P S    +ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LISVLKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPRFSDRAIFTLAPVIAFTSLLLSFAIVPVSPTWAVADLNIGILFFLMMAGLAVYAVLFAGWASNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_YERPA (NADH-quinone oxidoreductase subunit H OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=nuoH PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.855e-23
Identity = 57/157 (36.31%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            ++ VL  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   + ++F++ P IA  ++LLS+ ++P S    +ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LISVLKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPRFSDRAIFTLAPVIAFTSLLLSFAIVPVSPTWAVADLNIGILFFLMMAGLAVYAVLFAGWASNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_YERP3 (NADH-quinone oxidoreductase subunit H OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=nuoH PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.855e-23
Identity = 57/157 (36.31%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            ++ VL  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   + ++F++ P IA  ++LLS+ ++P S    +ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LISVLKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPRFSDRAIFTLAPVIAFTSLLLSFAIVPVSPTWAVADLNIGILFFLMMAGLAVYAVLFAGWASNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_YERE8 (NADH-quinone oxidoreductase subunit H OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=nuoH PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.855e-23
Identity = 57/157 (36.31%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            ++ VL  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   + ++F++ P IA  ++LLS+ ++P S    +ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LISVLKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPRFSDRAIFTLAPVIAFTSLLLSFAIVPVSPTWAVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_KLEP7 (NADH-quinone oxidoreductase subunit H OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=nuoH PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.855e-23
Identity = 57/157 (36.31%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L +L  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   +  +F++ P IA  ++LL++ ++P S   V+ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LLSILKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPRFSDRVIFTLAPVIAFTSLLLAFAIVPVSPTWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NUOH_KLEP3 (NADH-quinone oxidoreductase subunit H OS=Klebsiella pneumoniae (strain 342) GN=nuoH PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.855e-23
Identity = 57/157 (36.31%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +L +L  + I ++ +T G  +    ER +    Q R GP      G LQ +AD  K+ FKE+ +P   +  +F++ P IA  ++LL++ ++P S   V+ADLNIGI  ++ ++ +A   +L +G+ SNNKYS LG +RA+AQ++SYE+ L L ++ +
Sbjct:   12 LLSILKAVVILLVVVTCGAFMSFG-ERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPRFSDRVIFTLAPVIAFTSLLLAFAIVPVSPTWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOH_YERPP2.855e-2336.31NADH-quinone oxidoreductase subunit H OS=Yersinia ... [more]
NUOH_YERPN2.855e-2336.31NADH-quinone oxidoreductase subunit H OS=Yersinia ... [more]
NUOH_YERPG2.855e-2336.31NADH-quinone oxidoreductase subunit H OS=Yersinia ... [more]
NUOH_YERPE2.855e-2336.31NADH-quinone oxidoreductase subunit H OS=Yersinia ... [more]
NUOH_YERPB2.855e-2336.31NADH-quinone oxidoreductase subunit H OS=Yersinia ... [more]
NUOH_YERPA2.855e-2336.31NADH-quinone oxidoreductase subunit H OS=Yersinia ... [more]
NUOH_YERP32.855e-2336.31NADH-quinone oxidoreductase subunit H OS=Yersinia ... [more]
NUOH_YERE82.855e-2336.31NADH-quinone oxidoreductase subunit H OS=Yersinia ... [more]
NUOH_KLEP72.855e-2336.31NADH-quinone oxidoreductase subunit H OS=Klebsiell... [more]
NUOH_KLEP32.855e-2336.31NADH-quinone oxidoreductase subunit H OS=Klebsiell... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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